Wall clock time and date at job start Tue Mar 31 2020 15:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48500 * 109.46787 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46861 * 119.99920 * 3 2 1 7 7 C 1.37876 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00203 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47099 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00111 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47287 * 180.02562 * 11 10 9 13 13 N 1.30972 * 126.44515 * 89.99811 * 12 11 10 14 14 C 1.35197 * 105.57919 * 180.02562 * 13 12 11 15 15 C 1.48484 * 126.40794 * 180.02562 * 14 13 12 16 16 N 1.32644 * 119.71957 * 0.26977 * 15 14 13 17 17 C 1.31687 * 121.62984 * 180.31254 * 16 15 14 18 18 C 1.38362 * 120.88157 * 359.68034 * 17 16 15 19 19 C 1.38680 * 119.35416 * 0.02562 * 18 17 16 20 20 C 1.38513 * 118.49801 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.46403 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.47157 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47159 * 240.00259 * 21 20 19 24 24 F 1.39897 * 109.47274 * 119.99950 * 21 20 19 25 25 N 1.30718 * 107.18144 * 0.26046 * 14 13 12 26 26 O 1.21288 * 110.10795 * 359.54482 * 25 14 13 27 27 H 0.97010 * 119.99970 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47210 * 59.99994 * 9 7 2 29 29 H 1.09002 * 109.47121 * 300.00134 * 9 7 2 30 30 H 1.00902 * 110.99807 * 303.95050 * 10 9 7 31 31 H 1.09007 * 109.47338 * 59.99791 * 11 10 9 32 32 H 1.09004 * 109.47035 * 299.99986 * 11 10 9 33 33 H 1.07995 * 119.55637 * 179.70195 * 17 16 15 34 34 H 1.08001 * 120.32126 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.75258 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5053 -4.9070 0.0032 12 6 2.5148 -6.0259 0.0049 13 7 3.0352 -6.6028 1.0593 14 6 3.8822 -7.5408 0.5792 15 6 4.7182 -8.4678 1.3833 16 7 4.6659 -8.4192 2.7078 17 6 5.3953 -9.2193 3.4575 18 6 6.2438 -10.1506 2.8855 19 6 6.3243 -10.2387 1.5038 20 6 5.5464 -9.3837 0.7407 21 6 5.5995 -9.4409 -0.7643 22 9 6.5033 -10.4322 -1.1617 23 9 6.0172 -8.2026 -1.2636 24 9 4.3280 -9.7408 -1.2649 25 7 3.8313 -7.4755 -0.7254 26 8 3.0478 -6.6160 -1.0696 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5574 -0.8880 29 1 0.6247 -2.5562 0.8920 30 1 2.8404 -3.5493 -0.7788 31 1 0.8806 -4.9820 -0.8869 32 1 0.8801 -4.9809 0.8931 33 1 5.3301 -9.1478 4.5331 34 1 6.8376 -10.8026 3.5090 35 1 6.9794 -10.9571 1.0335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:59 Heat of formation + Delta-G solvation = -37.853722 kcal Electronic energy + Delta-G solvation = -27245.733997 eV Core-core repulsion = 22639.602065 eV Total energy + Delta-G solvation = -4606.131932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.28305 -48.82063 -48.71107 -46.81246 -41.55331 -37.69581 -37.00012 -35.02880 -34.46202 -33.87198 -32.46814 -29.70841 -27.84284 -26.89753 -26.44266 -24.36354 -23.93902 -23.55642 -22.54078 -19.85076 -19.64771 -19.60053 -19.39752 -19.07989 -18.47439 -17.71370 -17.43275 -16.98001 -16.43722 -15.93036 -15.81152 -15.58819 -15.42595 -15.31940 -15.18527 -15.11676 -14.98342 -14.88132 -14.67936 -14.40880 -14.04534 -13.92308 -13.35527 -13.20162 -13.08189 -12.97873 -12.71720 -12.61337 -12.29024 -12.08530 -11.61141 -11.41814 -11.33489 -10.90427 -10.64257 -10.31665 -9.30316 -8.21468 -6.31288 -0.94990 -0.25616 0.06436 1.10569 1.41228 1.44074 1.46574 1.52668 1.55214 1.90728 2.38999 2.40910 2.43449 2.56721 2.83774 3.13064 3.23234 3.37970 3.56775 3.58340 3.71615 3.75743 4.00081 4.18465 4.26776 4.31908 4.54371 4.69076 4.72674 4.81792 5.05339 5.25152 5.29374 5.58555 5.97423 6.29562 6.50522 6.53463 6.82866 6.84784 7.38579 8.89500 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.002624 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.129198 B =10667.535598 C =11104.878082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.687 5.687 11 C 0.153 3.847 12 C 0.209 3.791 13 N -0.457 5.457 14 C 0.181 3.819 15 C 0.224 3.776 16 N -0.479 5.479 17 C 0.130 3.870 18 C -0.129 4.129 19 C -0.026 4.026 20 C -0.220 4.220 21 C 0.515 3.485 22 F -0.167 7.167 23 F -0.178 7.178 24 F -0.176 7.176 25 N -0.367 5.367 26 O 0.092 5.908 27 H 0.266 0.734 28 H -0.017 1.017 29 H 0.015 0.985 30 H 0.341 0.659 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.211 0.789 34 H 0.208 0.792 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.668 -26.101 4.023 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.320 5.320 11 C 0.022 3.978 12 C -0.013 4.013 13 N -0.189 5.189 14 C -0.089 4.089 15 C 0.086 3.914 16 N -0.189 5.189 17 C -0.028 4.028 18 C -0.148 4.148 19 C -0.051 4.051 20 C -0.226 4.226 21 C 0.460 3.540 22 F -0.148 7.148 23 F -0.159 7.159 24 F -0.157 7.157 25 N -0.073 5.073 26 O 0.029 5.971 27 H 0.075 0.925 28 H 0.001 0.999 29 H 0.033 0.967 30 H 0.158 0.842 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.228 0.772 34 H 0.225 0.775 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 13.551 -25.951 4.982 29.697 hybrid contribution 0.042 0.694 -1.780 1.911 sum 13.593 -25.257 3.201 28.861 Atomic orbital electron populations 1.70049 1.07494 1.28136 1.51174 1.25824 0.95765 1.02976 0.94587 0.85456 0.78189 0.78094 0.78989 1.19260 1.20691 1.19701 1.21455 0.93772 0.91450 1.51072 0.92090 1.19271 0.90236 0.87192 0.94861 1.60568 1.21092 1.00284 1.50099 1.20540 0.89265 0.82391 1.05569 1.29118 0.96224 0.96448 0.79476 1.72113 1.10229 1.07946 1.28647 1.23871 0.99266 0.98089 0.87703 1.17506 0.92542 0.91272 0.90042 1.67682 1.22902 1.24879 1.03402 1.23945 0.88447 0.88141 1.02260 1.22960 0.98550 0.98980 0.94349 1.21961 0.93774 0.94539 0.94822 1.21028 1.05318 1.03723 0.92553 1.17997 0.73961 0.73867 0.88167 1.93173 1.67622 1.61798 1.92224 1.93228 1.89921 1.43500 1.89268 1.93215 1.40469 1.92842 1.89219 1.75002 1.09763 1.08284 1.14236 1.85275 1.40338 1.35447 1.36071 0.92494 0.99893 0.96729 0.84189 0.89138 0.86246 0.77242 0.77512 0.79378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.97 9.32 25.60 0.24 -29.73 16 8 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 9 C 0.21 10.62 5.44 85.55 0.47 11.09 16 10 N -0.69 -28.45 6.48 -521.98 -3.38 -31.83 16 11 C 0.15 5.05 6.31 85.56 0.54 5.59 16 12 C 0.21 7.03 8.01 88.36 0.71 7.74 16 13 N -0.46 -16.75 11.56 -302.58 -3.50 -20.25 16 14 C 0.18 6.19 7.52 137.33 1.03 7.23 16 15 C 0.22 6.31 6.73 41.99 0.28 6.59 16 16 N -0.48 -12.04 10.29 -184.79 -1.90 -13.94 16 17 C 0.13 1.66 11.18 84.74 0.95 2.60 16 18 C -0.13 -0.85 10.11 22.40 0.23 -0.62 16 19 C -0.03 -0.30 9.53 22.44 0.21 -0.08 16 20 C -0.22 -4.81 5.41 -19.56 -0.11 -4.91 16 21 C 0.52 12.63 2.78 71.24 0.20 12.83 16 22 F -0.17 -3.25 16.05 44.97 0.72 -2.53 16 23 F -0.18 -5.22 14.96 44.97 0.67 -4.55 16 24 F -0.18 -4.94 15.03 44.97 0.68 -4.27 16 25 N -0.37 -12.46 6.95 -59.22 -0.41 -12.87 16 26 O 0.09 3.05 11.29 74.56 0.84 3.90 16 27 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 28 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.34 13.51 8.71 -89.69 -0.78 12.73 16 31 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 33 H 0.21 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.21 -0.76 8.06 -2.91 -0.02 -0.79 16 35 H 0.19 0.92 7.26 -2.91 -0.02 0.90 16 Total: -1.00 -73.68 325.34 1.64 -72.04 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 0.40 Total: 3.38 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 5.21 Total: 19.20 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -8.91 Total: -132.96 kcal Atomic # 8 Polarization: 3.05 SS G_CDS: 0.84 Total: 3.90 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.07 Total: -11.34 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -73.68 1.64 -72.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.188 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds