Wall clock time and date at job start Tue Mar 31 2020 15:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34786 * 117.00199 * 2 1 4 4 O 1.21541 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.47148 * 120.00232 * 179.97438 * 3 2 1 6 6 C 1.39905 * 120.14403 * 270.00227 * 5 3 2 7 7 C 1.50704 * 119.95787 * 359.97438 * 6 5 3 8 8 C 1.36523 * 120.08409 * 180.02562 * 6 5 3 9 9 C 1.39189 * 120.38131 * 359.96979 * 8 6 5 10 10 O 1.35704 * 119.86055 * 180.02562 * 9 8 6 11 11 C 1.38710 * 120.27967 * 0.03012 * 9 8 6 12 12 C 1.50705 * 120.04122 * 179.69997 * 11 9 8 13 13 C 1.38469 * 119.91539 * 359.97391 * 11 9 8 14 14 O 1.35640 * 120.18892 * 179.97438 * 13 11 9 15 15 C 1.42900 * 116.99854 * 106.66413 * 14 13 11 16 16 H 1.09001 * 109.47481 * 36.73923 * 15 14 13 17 17 C 1.50704 * 109.47315 * 156.74240 * 15 14 13 18 18 H 1.08004 * 119.99502 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00494 * 179.97438 * 17 15 14 20 20 N 1.31519 * 119.99982 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00346 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47072 * 89.99809 * 21 19 17 23 23 H 1.48502 * 109.47462 * 209.99912 * 21 19 17 24 24 H 1.48495 * 109.47228 * 330.00306 * 21 19 17 25 25 C 1.52999 * 109.47329 * 276.73878 * 15 14 13 26 26 Cl 1.80305 * 109.47029 * 67.48265 * 25 15 14 27 27 H 1.09005 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47379 * 299.99779 * 1 2 3 29 29 H 1.08998 * 109.47408 * 60.00311 * 1 2 3 30 30 H 1.08998 * 109.46776 * 270.02569 * 7 6 5 31 31 H 1.09000 * 109.47201 * 30.02160 * 7 6 5 32 32 H 1.09003 * 109.46973 * 150.02401 * 7 6 5 33 33 H 1.08010 * 119.81098 * 180.02562 * 8 6 5 34 34 H 0.96694 * 114.00196 * 270.02383 * 10 9 8 35 35 H 1.08994 * 109.47165 * 83.50721 * 12 11 9 36 36 H 1.09006 * 109.46696 * 203.50446 * 12 11 9 37 37 H 1.08999 * 109.47046 * 323.50615 * 12 11 9 38 38 H 0.96992 * 120.00479 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.47626 * 187.48646 * 25 15 14 40 40 H 1.08998 * 109.47191 * 307.48845 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2345 1.3149 1.2107 7 6 3.4838 1.2764 2.5169 8 6 5.5978 1.3869 1.2098 9 6 6.3000 1.4234 0.0086 10 8 7.6552 1.4944 0.0200 11 6 5.6205 1.3876 -1.2002 12 6 6.3859 1.4342 -2.4976 13 6 4.2378 1.3146 -1.2132 14 8 3.5677 1.2798 -2.3920 15 6 2.9946 0.0283 -2.7757 16 1 2.6168 -0.4848 -1.8913 17 6 1.8611 0.2691 -3.7392 18 1 1.6039 1.2772 -4.0292 19 6 1.1526 -0.7974 -4.2506 20 7 1.4661 -2.0250 -3.8979 21 14 -0.2528 -0.4988 -5.4443 22 1 0.2698 -0.4995 -6.8344 23 1 -1.2656 -1.5746 -5.2958 24 1 -0.8798 0.8152 -5.1521 25 6 4.0619 -0.8362 -3.4498 26 17 5.3087 -1.3073 -2.2355 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.2490 2.2934 2.8311 31 1 2.5593 0.7134 2.3882 32 1 4.1000 0.7946 3.2760 33 1 6.1347 1.4148 2.1466 34 1 8.0017 2.3971 0.0235 35 1 6.7283 0.4316 -2.7536 36 1 5.7369 1.8097 -3.2889 37 1 7.2458 2.0951 -2.3886 38 1 0.9679 -2.7753 -4.2578 39 1 3.5975 -1.7328 -3.8603 40 1 4.5332 -0.2706 -4.2536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229336655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:17 Heat of formation + Delta-G solvation = -155.836380 kcal Electronic energy + Delta-G solvation = -27694.149912 eV Core-core repulsion = 23693.573351 eV Total energy + Delta-G solvation = -4000.576561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57322 -39.26316 -37.90557 -36.40533 -35.70356 -34.82586 -33.65955 -32.67272 -30.12287 -29.12851 -28.99484 -27.08433 -25.33979 -24.76523 -23.45982 -21.84086 -20.66910 -20.13342 -17.95330 -17.23447 -16.96966 -16.81811 -16.49446 -16.20081 -15.26840 -14.97872 -14.72453 -14.13647 -13.91110 -13.50806 -13.38163 -13.19803 -12.90939 -12.78565 -12.51463 -12.46344 -12.24708 -12.07069 -11.86672 -11.71896 -11.64932 -11.41956 -11.11777 -11.06719 -10.79972 -10.50095 -10.38190 -10.26521 -10.22181 -9.99062 -9.42526 -9.26384 -9.00734 -8.63657 -8.24826 -7.86807 -6.40887 -4.48808 1.18690 1.53906 2.60617 3.11583 3.19811 3.21930 3.24198 3.41913 3.63939 4.06561 4.23607 4.68557 4.91958 4.93984 5.17487 5.21397 5.35039 5.48228 5.55160 5.64629 5.70182 5.77729 5.82937 5.96330 6.03262 6.07793 6.17974 6.22894 6.30030 6.45457 6.50807 6.58210 6.71713 6.74201 6.86398 6.95206 7.20288 7.54136 7.76604 7.78622 8.19517 8.31750 8.69143 9.18218 10.65495 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.006299 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.095961 B = 4444.077134 C = 5779.813769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.340 6.340 3 C 0.532 3.468 4 O -0.502 6.502 5 C -0.154 4.154 6 C -0.028 4.028 7 C -0.118 4.118 8 C -0.164 4.164 9 C 0.134 3.866 10 O -0.491 6.491 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.191 3.809 14 O -0.334 6.334 15 C 0.216 3.784 16 H 0.055 0.945 17 C -0.519 4.519 18 H 0.074 0.926 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.910 3.090 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.270 1.270 25 C -0.042 4.042 26 Cl -0.235 7.235 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.386 0.614 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.271 0.729 39 H 0.133 0.867 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 3.929 8.272 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.255 6.255 3 C 0.375 3.625 4 O -0.389 6.389 5 C -0.156 4.156 6 C -0.029 4.029 7 C -0.174 4.174 8 C -0.183 4.183 9 C 0.089 3.911 10 O -0.301 6.301 11 C -0.116 4.116 12 C -0.164 4.164 13 C 0.145 3.855 14 O -0.251 6.251 15 C 0.162 3.838 16 H 0.073 0.927 17 C -0.557 4.557 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.737 3.263 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.104 4.104 26 Cl -0.209 7.209 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.242 0.758 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.460 3.499 8.178 10.437 hybrid contribution -0.783 0.349 -0.578 1.034 sum 4.677 3.848 7.600 9.718 Atomic orbital electron populations 1.23214 0.76508 1.03583 1.02068 1.86722 1.23246 1.32193 1.83386 1.20774 0.88624 0.81812 0.71288 1.90809 1.66573 1.36285 1.45263 1.19352 0.89995 1.11784 0.94495 1.19104 0.93196 0.97288 0.93279 1.20863 1.00060 1.02705 0.93789 1.20677 0.93034 1.06709 0.97845 1.18140 0.82499 0.99290 0.91139 1.84764 1.16746 1.32238 1.96377 1.20114 0.92179 1.03264 0.96063 1.20779 0.98639 1.03319 0.93699 1.18283 0.89259 0.92815 0.85190 1.85975 1.69595 1.36454 1.33087 1.20661 0.89059 0.77461 0.96593 0.92741 1.20957 1.13243 0.94531 1.26931 0.90758 1.24925 0.97644 0.94643 0.96489 1.69820 1.40767 0.98293 1.43236 0.86273 0.80995 0.78369 0.80706 1.20112 1.20715 1.19408 1.25840 0.88504 1.04529 0.91558 1.98640 1.62836 1.94115 1.65334 0.88287 0.92764 0.91263 0.90587 0.91596 0.90665 0.85091 0.75805 0.89683 0.90916 0.92560 0.91890 0.84925 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.57 101.05 1.07 1.75 16 2 O -0.34 -7.06 9.07 -40.73 -0.37 -7.43 16 3 C 0.53 11.40 4.58 34.35 0.16 11.55 16 4 O -0.50 -11.48 16.90 -19.30 -0.33 -11.80 16 5 C -0.15 -3.12 5.61 -104.85 -0.59 -3.70 16 6 C -0.03 -0.46 5.88 -104.62 -0.61 -1.08 16 7 C -0.12 -1.55 9.61 36.01 0.35 -1.20 16 8 C -0.16 -2.43 9.54 -39.85 -0.38 -2.81 16 9 C 0.13 2.10 6.68 -39.05 -0.26 1.84 16 10 O -0.49 -6.38 12.64 -18.82 -0.24 -6.61 16 11 C -0.12 -2.08 4.26 -104.36 -0.44 -2.52 16 12 C -0.11 -1.79 8.82 36.01 0.32 -1.47 16 13 C 0.19 3.99 4.67 -38.69 -0.18 3.81 16 14 O -0.33 -7.89 8.28 -18.62 -0.15 -8.04 16 15 C 0.22 5.30 2.00 -27.88 -0.06 5.25 16 16 H 0.06 1.45 5.70 -51.93 -0.30 1.16 16 17 C -0.52 -13.60 8.89 -34.44 -0.31 -13.90 16 18 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 19 C 0.07 1.68 5.28 -17.82 -0.09 1.59 16 20 N -0.88 -22.80 11.29 55.43 0.63 -22.17 16 21 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 C -0.04 -0.95 6.14 37.16 0.23 -0.72 16 26 Cl -0.24 -4.89 23.06 -51.86 -1.20 -6.09 16 27 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.39 3.00 9.06 45.56 0.41 3.41 16 35 H 0.08 1.47 5.89 -51.93 -0.31 1.16 16 36 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16 37 H 0.06 0.76 7.74 -51.93 -0.40 0.36 16 38 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.13 3.27 5.90 -51.93 -0.31 2.96 16 40 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -30.22 346.28 -6.42 -36.63 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.15 Total: 7.05 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.81 Total: -1.62 kcal Atomic # 7 Polarization: -22.80 SS G_CDS: 0.63 Total: -22.17 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.09 Total: -33.89 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -4.89 SS G_CDS: -1.20 Total: -6.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.22 -6.42 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229336655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.203 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds