Wall clock time and date at job start Tue Mar 31 2020 15:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34786 * 117.00199 * 2 1 4 4 O 1.21541 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.47148 * 120.00232 * 179.97438 * 3 2 1 6 6 C 1.39905 * 120.14403 * 270.00227 * 5 3 2 7 7 C 1.50704 * 119.95787 * 359.97438 * 6 5 3 8 8 C 1.36523 * 120.08409 * 180.02562 * 6 5 3 9 9 C 1.39189 * 120.38131 * 359.96979 * 8 6 5 10 10 O 1.35704 * 119.86055 * 180.02562 * 9 8 6 11 11 C 1.38710 * 120.27967 * 0.03012 * 9 8 6 12 12 C 1.50705 * 120.04122 * 179.69997 * 11 9 8 13 13 C 1.38469 * 119.91539 * 359.97391 * 11 9 8 14 14 O 1.35640 * 120.18892 * 179.97438 * 13 11 9 15 15 C 1.42900 * 116.99854 * 106.66413 * 14 13 11 16 16 H 1.09001 * 109.47481 * 36.73923 * 15 14 13 17 17 C 1.50704 * 109.47315 * 156.74240 * 15 14 13 18 18 H 1.08004 * 119.99502 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00494 * 179.97438 * 17 15 14 20 20 N 1.31519 * 119.99982 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00346 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47072 * 89.99809 * 21 19 17 23 23 H 1.48502 * 109.47462 * 209.99912 * 21 19 17 24 24 H 1.48495 * 109.47228 * 330.00306 * 21 19 17 25 25 C 1.52999 * 109.47329 * 276.73878 * 15 14 13 26 26 Cl 1.80305 * 109.47029 * 67.48265 * 25 15 14 27 27 H 1.09005 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47379 * 299.99779 * 1 2 3 29 29 H 1.08998 * 109.47408 * 60.00311 * 1 2 3 30 30 H 1.08998 * 109.46776 * 270.02569 * 7 6 5 31 31 H 1.09000 * 109.47201 * 30.02160 * 7 6 5 32 32 H 1.09003 * 109.46973 * 150.02401 * 7 6 5 33 33 H 1.08010 * 119.81098 * 180.02562 * 8 6 5 34 34 H 0.96694 * 114.00196 * 270.02383 * 10 9 8 35 35 H 1.08994 * 109.47165 * 83.50721 * 12 11 9 36 36 H 1.09006 * 109.46696 * 203.50446 * 12 11 9 37 37 H 1.08999 * 109.47046 * 323.50615 * 12 11 9 38 38 H 0.96992 * 120.00479 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.47626 * 187.48646 * 25 15 14 40 40 H 1.08998 * 109.47191 * 307.48845 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5334 1.2780 0.0006 6 6 4.2345 1.3149 1.2107 7 6 3.4838 1.2764 2.5169 8 6 5.5978 1.3869 1.2098 9 6 6.3000 1.4234 0.0086 10 8 7.6552 1.4944 0.0200 11 6 5.6205 1.3876 -1.2002 12 6 6.3859 1.4342 -2.4976 13 6 4.2378 1.3146 -1.2132 14 8 3.5677 1.2798 -2.3920 15 6 2.9946 0.0283 -2.7757 16 1 2.6168 -0.4848 -1.8913 17 6 1.8611 0.2691 -3.7392 18 1 1.6039 1.2772 -4.0292 19 6 1.1526 -0.7974 -4.2506 20 7 1.4661 -2.0250 -3.8979 21 14 -0.2528 -0.4988 -5.4443 22 1 0.2698 -0.4995 -6.8344 23 1 -1.2656 -1.5746 -5.2958 24 1 -0.8798 0.8152 -5.1521 25 6 4.0619 -0.8362 -3.4498 26 17 5.3087 -1.3073 -2.2355 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.2490 2.2934 2.8311 31 1 2.5593 0.7134 2.3882 32 1 4.1000 0.7946 3.2760 33 1 6.1347 1.4148 2.1466 34 1 8.0017 2.3971 0.0235 35 1 6.7283 0.4316 -2.7536 36 1 5.7369 1.8097 -3.2889 37 1 7.2458 2.0951 -2.3886 38 1 0.9679 -2.7753 -4.2578 39 1 3.5975 -1.7328 -3.8603 40 1 4.5332 -0.2706 -4.2536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229336655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:16 Heat of formation + Delta-G solvation = -174.558664 kcal Electronic energy + Delta-G solvation = -27694.961771 eV Core-core repulsion = 23693.573351 eV Total energy + Delta-G solvation = -4001.388420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04704 -40.72638 -39.40472 -37.76193 -37.24314 -36.55457 -35.46519 -34.08536 -31.68785 -30.75374 -30.21930 -28.50804 -27.28273 -26.04817 -24.87022 -23.46693 -22.22625 -21.55769 -19.23154 -18.81856 -18.75677 -18.30169 -18.09049 -17.71077 -16.80222 -16.70867 -15.97957 -15.75163 -15.32036 -15.18504 -14.78905 -14.51220 -14.27709 -14.11444 -14.02614 -13.91316 -13.81051 -13.66230 -13.30173 -13.14410 -13.01981 -12.92194 -12.81721 -12.72978 -12.33145 -12.13052 -11.89307 -11.82346 -11.64117 -11.59384 -11.23515 -11.02742 -10.70673 -10.51225 -9.57990 -9.27619 -8.35655 -6.51635 -0.14800 0.21216 0.99000 1.36295 1.39406 1.49755 1.62211 1.78396 2.21709 2.37723 2.88353 2.97279 3.35813 3.67342 3.76189 3.98941 4.15371 4.19644 4.25174 4.31154 4.39216 4.42072 4.54139 4.61198 4.64126 4.68560 4.72086 4.86898 4.95259 5.03200 5.11986 5.21355 5.29692 5.32506 5.36576 5.43914 5.50917 5.67829 5.85965 6.46726 6.59827 6.80980 6.86987 7.20162 8.70350 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.006299 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.095961 B = 4444.077134 C = 5779.813769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.533 3.467 4 O -0.530 6.530 5 C -0.187 4.187 6 C -0.028 4.028 7 C -0.117 4.117 8 C -0.152 4.152 9 C 0.151 3.849 10 O -0.490 6.490 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.155 3.845 14 O -0.353 6.353 15 C 0.226 3.774 16 H 0.030 0.970 17 C -0.546 4.546 18 H 0.055 0.945 19 C 0.036 3.964 20 N -0.900 5.900 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.276 1.276 25 C -0.031 4.031 26 Cl -0.215 7.215 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.173 0.827 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.276 0.724 39 H 0.115 0.885 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 3.925 9.863 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.378 3.622 4 O -0.420 6.420 5 C -0.189 4.189 6 C -0.029 4.029 7 C -0.173 4.173 8 C -0.170 4.170 9 C 0.106 3.894 10 O -0.304 6.304 11 C -0.131 4.131 12 C -0.159 4.159 13 C 0.110 3.890 14 O -0.270 6.270 15 C 0.172 3.828 16 H 0.048 0.952 17 C -0.584 4.584 18 H 0.073 0.927 19 C -0.166 4.166 20 N -0.537 5.537 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.201 1.201 25 C -0.094 4.094 26 Cl -0.189 7.189 27 H 0.141 0.859 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.190 0.810 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.054 3.500 9.780 12.556 hybrid contribution -1.141 0.365 -0.945 1.525 sum 5.913 3.865 8.835 11.312 Atomic orbital electron populations 1.23449 0.75021 1.05214 1.02208 1.86709 1.24971 1.32258 1.83113 1.21142 0.89403 0.81465 0.70209 1.90765 1.67396 1.36998 1.46858 1.19608 0.89351 1.14024 0.95887 1.19539 0.94171 0.95961 0.93200 1.20960 0.99705 1.03714 0.92915 1.21099 0.92330 1.04387 0.99178 1.18175 0.83588 0.97188 0.90496 1.84704 1.14807 1.34688 1.96158 1.20281 0.91190 1.03982 0.97687 1.20728 0.99167 1.03370 0.92683 1.18597 0.90436 0.95573 0.84389 1.85929 1.70231 1.35981 1.34896 1.20306 0.89187 0.78168 0.95160 0.95246 1.21091 1.15023 0.93999 1.28282 0.92700 1.25563 0.99341 0.94247 0.97489 1.69894 1.41397 0.98785 1.43651 0.85423 0.78471 0.78072 0.79025 1.19196 1.19524 1.20062 1.25456 0.88745 1.03342 0.91855 1.98627 1.61674 1.93970 1.64595 0.85945 0.90226 0.93504 0.89258 0.93042 0.87249 0.80971 0.72583 0.90589 0.92889 0.89336 0.91451 0.86747 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 10.57 113.37 1.20 2.39 16 2 O -0.35 -15.24 9.07 -56.97 -0.52 -15.76 16 3 C 0.53 23.58 4.58 70.16 0.32 23.91 16 4 O -0.53 -25.23 16.90 19.70 0.33 -24.89 16 5 C -0.19 -7.61 5.61 -20.01 -0.11 -7.72 16 6 C -0.03 -0.87 5.88 -19.86 -0.12 -0.99 16 7 C -0.12 -2.77 9.61 71.24 0.68 -2.09 16 8 C -0.15 -3.93 9.54 22.10 0.21 -3.72 16 9 C 0.15 4.27 6.68 22.61 0.15 4.42 16 10 O -0.49 -10.57 12.64 -90.24 -1.14 -11.71 16 11 C -0.13 -4.58 4.26 -19.69 -0.08 -4.66 16 12 C -0.10 -3.32 8.82 71.24 0.63 -2.69 16 13 C 0.16 6.60 4.67 22.85 0.11 6.71 16 14 O -0.35 -17.43 8.28 -89.53 -0.74 -18.17 16 15 C 0.23 11.58 2.00 29.85 0.06 11.64 16 16 H 0.03 1.65 5.70 -2.39 -0.01 1.64 16 17 C -0.55 -29.93 8.89 25.60 0.23 -29.70 16 18 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 19 C 0.04 1.84 5.28 84.65 0.45 2.29 16 20 N -0.90 -47.24 11.29 21.45 0.24 -47.00 16 21 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 C -0.03 -1.46 6.14 71.98 0.44 -1.02 16 26 Cl -0.21 -8.93 23.06 -2.72 -0.06 -8.99 16 27 H 0.12 3.60 8.14 -2.38 -0.02 3.58 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.38 7.08 -2.39 -0.02 1.36 16 32 H 0.11 1.83 8.08 -2.39 -0.02 1.81 16 33 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.41 4.38 9.06 -74.06 -0.67 3.71 16 35 H 0.08 2.56 5.89 -2.39 -0.01 2.55 16 36 H 0.05 1.89 7.34 -2.38 -0.02 1.87 16 37 H 0.09 2.18 7.74 -2.39 -0.02 2.17 16 38 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 39 H 0.11 5.81 5.90 -2.39 -0.01 5.80 16 40 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -68.20 346.28 4.73 -63.47 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.42 Total: 20.96 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 4.16 Total: -1.25 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.24 Total: -47.00 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -2.07 Total: -70.53 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -8.93 SS G_CDS: -0.06 Total: -8.99 kcal Total: -68.20 4.73 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229336655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.088 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds