Wall clock time and date at job start Tue Mar 31 2020 15:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99843 * 2 1 4 4 H 1.48497 * 109.46799 * 269.99597 * 3 2 1 5 5 H 1.48490 * 109.47307 * 29.99871 * 3 2 1 6 6 H 1.48503 * 109.46782 * 149.99884 * 3 2 1 7 7 C 1.37881 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99452 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46862 * 182.12510 * 9 7 2 11 11 C 1.46900 * 110.99910 * 209.78446 * 10 9 7 12 12 C 1.50698 * 109.47033 * 154.98425 * 11 10 9 13 13 N 1.31871 * 119.61289 * 278.58739 * 12 11 10 14 14 C 1.31842 * 121.74967 * 179.70935 * 13 12 11 15 15 C 1.38349 * 120.77713 * 0.56917 * 14 13 12 16 16 Cl 1.73597 * 120.42855 * 179.74671 * 15 14 13 17 17 C 1.38718 * 119.14904 * 359.71824 * 15 14 13 18 18 C 1.38315 * 119.61514 * 98.85985 * 12 11 10 19 19 Cl 1.73605 * 120.42315 * 0.02562 * 18 12 11 20 20 C 1.46903 * 111.00049 * 85.82662 * 10 9 7 21 21 C 1.54963 * 110.92046 * 300.55806 * 20 10 9 22 22 C 1.54273 * 104.15580 * 156.29583 * 21 20 10 23 23 C 1.53865 * 106.64283 * 336.44307 * 22 21 20 24 24 C 1.54271 * 106.59680 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99776 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47587 * 62.12852 * 9 7 2 27 27 H 1.08998 * 109.47293 * 302.12179 * 9 7 2 28 28 H 1.09002 * 109.46799 * 274.97618 * 11 10 9 29 29 H 1.08991 * 109.47290 * 34.98046 * 11 10 9 30 30 H 1.08005 * 119.60840 * 180.28778 * 14 13 12 31 31 H 1.07995 * 120.80283 * 180.02562 * 17 15 14 32 32 H 1.08994 * 110.66982 * 177.25330 * 20 10 9 33 33 H 1.09000 * 110.48041 * 37.64197 * 21 20 10 34 34 H 1.09006 * 110.53091 * 274.97371 * 21 20 10 35 35 H 1.09006 * 110.02975 * 217.13130 * 22 21 20 36 36 H 1.09004 * 110.03209 * 95.75644 * 22 21 20 37 37 H 1.08998 * 110.03537 * 119.25849 * 23 22 21 38 38 H 1.09002 * 110.03545 * 240.64356 * 23 22 21 39 39 H 1.09006 * 110.48436 * 142.28686 * 24 23 22 40 40 H 1.08999 * 110.48519 * 264.79910 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2048 -3.6152 0.0525 11 6 1.6643 -4.8016 -0.6245 12 6 2.8004 -5.6717 -1.0968 13 7 3.4198 -5.3798 -2.2238 14 6 4.4223 -6.1086 -2.6734 15 6 4.8557 -7.2227 -1.9770 16 17 6.1723 -8.1797 -2.5807 17 6 4.2251 -7.5650 -0.7898 18 6 3.1777 -6.7704 -0.3460 19 17 2.3509 -7.1507 1.1324 20 6 2.5780 -3.9247 1.4392 21 6 3.2262 -2.6956 2.1253 22 6 2.9954 -2.9387 3.6311 23 6 1.7828 -3.8790 3.7450 24 6 1.3176 -4.1746 2.3041 25 1 -0.4850 0.8401 0.0004 26 1 0.6537 -2.5738 -0.9081 27 1 0.5958 -2.5403 0.8706 28 1 1.0407 -5.3639 0.0705 29 1 1.0652 -4.4902 -1.4801 30 1 4.9079 -5.8353 -3.5986 31 1 4.5419 -8.4289 -0.2244 32 1 3.2477 -4.7839 1.4749 33 1 2.7329 -1.7771 1.8071 34 1 4.2928 -2.6530 1.9047 35 1 2.7845 -1.9947 4.1337 36 1 3.8746 -3.4081 4.0726 37 1 2.0736 -4.8051 4.2408 38 1 0.9836 -3.3917 4.3035 39 1 0.9922 -5.2110 2.2134 40 1 0.5142 -3.4967 2.0160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232573157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:17 Heat of formation + Delta-G solvation = 28.886243 kcal Electronic energy + Delta-G solvation = -24067.843495 eV Core-core repulsion = 20548.279024 eV Total energy + Delta-G solvation = -3519.564471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51235 -38.50352 -36.96072 -36.67636 -34.68686 -32.83233 -32.41448 -31.19934 -28.23376 -27.35342 -27.22464 -24.75607 -23.83008 -22.21913 -21.77856 -19.66547 -18.60735 -17.41023 -17.11641 -16.41192 -15.90332 -15.72039 -15.01107 -14.76359 -14.40525 -14.31138 -13.71241 -13.53333 -13.09080 -12.88337 -12.69687 -12.46528 -12.09127 -11.95734 -11.88264 -11.49805 -11.12947 -11.09153 -11.04782 -10.79562 -10.62541 -10.48777 -10.40768 -10.27849 -10.04589 -9.81701 -9.74771 -9.65217 -9.31101 -9.16182 -8.80604 -8.34799 -7.21720 -6.00117 -3.96863 0.67961 0.87381 1.61329 2.04583 3.34153 3.40503 3.41584 3.45322 4.23899 4.40749 4.46406 4.48579 4.86482 4.92930 5.01276 5.27645 5.30704 5.35898 5.51280 5.53578 5.65619 5.85525 5.95236 6.03847 6.15006 6.20143 6.22340 6.27255 6.34879 6.42787 6.54694 6.62316 6.78718 6.98548 7.17847 7.42467 7.55801 7.78760 7.85435 8.13136 8.22138 8.54162 9.07662 9.62357 11.09389 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004223 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.575619 B = 6629.297686 C = 7784.482111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.067 0.933 9 C 0.184 3.816 10 N -0.515 5.515 11 C 0.089 3.911 12 C 0.179 3.821 13 N -0.429 5.429 14 C 0.122 3.878 15 C -0.092 4.092 16 Cl -0.054 7.054 17 C -0.060 4.060 18 C -0.081 4.081 19 Cl -0.039 7.039 20 C 0.091 3.909 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.165 4.165 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.018 0.982 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 -16.365 0.589 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.085 0.915 9 C 0.060 3.940 10 N -0.238 5.238 11 C -0.040 4.040 12 C 0.039 3.961 13 N -0.138 5.138 14 C -0.037 4.037 15 C -0.122 4.122 16 Cl -0.026 7.026 17 C -0.087 4.087 18 C -0.111 4.111 19 Cl -0.010 7.010 20 C -0.018 4.018 21 C -0.173 4.173 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.204 4.204 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.187 0.813 31 H 0.169 0.831 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.967 -15.462 -0.070 16.959 hybrid contribution 0.193 -0.330 1.000 1.070 sum 7.160 -15.792 0.930 17.364 Atomic orbital electron populations 1.69945 1.05975 1.26682 1.51167 1.24964 0.94807 0.99069 0.95795 0.86586 0.79835 0.83434 0.78140 1.20728 1.21468 1.19780 1.21142 0.93710 0.89502 1.48658 0.91469 1.20030 0.89963 0.87141 0.96869 1.62134 1.44219 1.03957 1.13512 1.21147 0.90911 0.92278 0.99700 1.21643 0.95312 0.90570 0.88525 1.67952 1.06441 1.26715 1.12670 1.23026 0.92557 0.88907 0.99164 1.21986 0.95368 0.97412 0.97401 1.98378 1.46052 1.70884 1.87269 1.21347 0.93391 0.99488 0.94509 1.21916 0.98159 0.98875 0.92113 1.98384 1.77088 1.93506 1.32027 1.22599 0.94828 0.97250 0.87104 1.22952 1.00222 1.02104 0.92043 1.22108 0.96903 0.98778 0.98229 1.21946 0.97834 0.98468 0.96933 1.23137 1.00960 1.00590 0.95697 0.93007 0.95785 0.96468 0.92404 0.88866 0.81342 0.83118 0.91677 0.85552 0.93203 0.92382 0.93366 0.93193 0.92588 0.93007 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.49 -13.03 6.55 -34.44 -0.23 -13.25 16 8 H 0.07 1.81 7.14 -52.49 -0.37 1.44 16 9 C 0.18 4.46 4.44 -4.97 -0.02 4.44 16 10 N -0.52 -10.56 4.36 -227.09 -0.99 -11.54 16 11 C 0.09 1.56 5.03 -4.98 -0.03 1.54 16 12 C 0.18 2.85 6.03 -82.55 -0.50 2.36 16 13 N -0.43 -6.92 10.27 -9.42 -0.10 -7.01 16 14 C 0.12 1.56 10.99 -17.51 -0.19 1.37 16 15 C -0.09 -1.06 6.34 -39.36 -0.25 -1.31 16 16 Cl -0.05 -0.53 28.99 -51.86 -1.50 -2.03 16 17 C -0.06 -0.70 9.79 -39.21 -0.38 -1.08 16 18 C -0.08 -1.10 5.82 -39.36 -0.23 -1.32 16 19 Cl -0.04 -0.49 23.74 -51.86 -1.23 -1.72 16 20 C 0.09 1.69 2.41 -65.68 -0.16 1.53 16 21 C -0.14 -2.64 5.76 -25.03 -0.14 -2.79 16 22 C -0.12 -2.01 6.80 -25.61 -0.17 -2.18 16 23 C -0.11 -1.78 6.80 -25.62 -0.17 -1.96 16 24 C -0.17 -2.85 5.31 -25.07 -0.13 -2.99 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 26 H 0.02 0.63 7.34 -51.93 -0.38 0.25 16 27 H 0.02 0.45 5.06 -51.93 -0.26 0.19 16 28 H 0.06 0.95 5.15 -51.93 -0.27 0.68 16 29 H 0.09 1.72 7.38 -51.93 -0.38 1.33 16 30 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.07 1.15 5.85 -51.93 -0.30 0.85 16 33 H 0.13 2.90 4.47 -51.93 -0.23 2.67 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.81 6.08 -51.93 -0.32 0.50 16 40 H 0.09 1.71 5.37 -51.93 -0.28 1.43 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -27.88 338.00 -10.61 -38.49 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.89 Total: 1.68 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.71 Total: -14.25 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.35 Total: -43.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.73 Total: -3.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.88 -10.61 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232573157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.373 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds