Wall clock time and date at job start Tue Mar 31 2020 15:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99843 * 2 1 4 4 H 1.48497 * 109.46799 * 269.99597 * 3 2 1 5 5 H 1.48490 * 109.47307 * 29.99871 * 3 2 1 6 6 H 1.48503 * 109.46782 * 149.99884 * 3 2 1 7 7 C 1.37881 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99452 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46862 * 182.12510 * 9 7 2 11 11 C 1.46900 * 110.99910 * 209.78446 * 10 9 7 12 12 C 1.50698 * 109.47033 * 154.98425 * 11 10 9 13 13 N 1.31871 * 119.61289 * 278.58739 * 12 11 10 14 14 C 1.31842 * 121.74967 * 179.70935 * 13 12 11 15 15 C 1.38349 * 120.77713 * 0.56917 * 14 13 12 16 16 Cl 1.73597 * 120.42855 * 179.74671 * 15 14 13 17 17 C 1.38718 * 119.14904 * 359.71824 * 15 14 13 18 18 C 1.38315 * 119.61514 * 98.85985 * 12 11 10 19 19 Cl 1.73605 * 120.42315 * 0.02562 * 18 12 11 20 20 C 1.46903 * 111.00049 * 85.82662 * 10 9 7 21 21 C 1.54963 * 110.92046 * 300.55806 * 20 10 9 22 22 C 1.54273 * 104.15580 * 156.29583 * 21 20 10 23 23 C 1.53865 * 106.64283 * 336.44307 * 22 21 20 24 24 C 1.54271 * 106.59680 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99776 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47587 * 62.12852 * 9 7 2 27 27 H 1.08998 * 109.47293 * 302.12179 * 9 7 2 28 28 H 1.09002 * 109.46799 * 274.97618 * 11 10 9 29 29 H 1.08991 * 109.47290 * 34.98046 * 11 10 9 30 30 H 1.08005 * 119.60840 * 180.28778 * 14 13 12 31 31 H 1.07995 * 120.80283 * 180.02562 * 17 15 14 32 32 H 1.08994 * 110.66982 * 177.25330 * 20 10 9 33 33 H 1.09000 * 110.48041 * 37.64197 * 21 20 10 34 34 H 1.09006 * 110.53091 * 274.97371 * 21 20 10 35 35 H 1.09006 * 110.02975 * 217.13130 * 22 21 20 36 36 H 1.09004 * 110.03209 * 95.75644 * 22 21 20 37 37 H 1.08998 * 110.03537 * 119.25849 * 23 22 21 38 38 H 1.09002 * 110.03545 * 240.64356 * 23 22 21 39 39 H 1.09006 * 110.48436 * 142.28686 * 24 23 22 40 40 H 1.08999 * 110.48519 * 264.79910 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2048 -3.6152 0.0525 11 6 1.6643 -4.8016 -0.6245 12 6 2.8004 -5.6717 -1.0968 13 7 3.4198 -5.3798 -2.2238 14 6 4.4223 -6.1086 -2.6734 15 6 4.8557 -7.2227 -1.9770 16 17 6.1723 -8.1797 -2.5807 17 6 4.2251 -7.5650 -0.7898 18 6 3.1777 -6.7704 -0.3460 19 17 2.3509 -7.1507 1.1324 20 6 2.5780 -3.9247 1.4392 21 6 3.2262 -2.6956 2.1253 22 6 2.9954 -2.9387 3.6311 23 6 1.7828 -3.8790 3.7450 24 6 1.3176 -4.1746 2.3041 25 1 -0.4850 0.8401 0.0004 26 1 0.6537 -2.5738 -0.9081 27 1 0.5958 -2.5403 0.8706 28 1 1.0407 -5.3639 0.0705 29 1 1.0652 -4.4902 -1.4801 30 1 4.9079 -5.8353 -3.5986 31 1 4.5419 -8.4289 -0.2244 32 1 3.2477 -4.7839 1.4749 33 1 2.7329 -1.7771 1.8071 34 1 4.2928 -2.6530 1.9047 35 1 2.7845 -1.9947 4.1337 36 1 3.8746 -3.4081 4.0726 37 1 2.0736 -4.8051 4.2408 38 1 0.9836 -3.3917 4.3035 39 1 0.9922 -5.2110 2.2134 40 1 0.5142 -3.4967 2.0160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232573157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:16 Heat of formation + Delta-G solvation = 13.682625 kcal Electronic energy + Delta-G solvation = -24068.502773 eV Core-core repulsion = 20548.279024 eV Total energy + Delta-G solvation = -3520.223749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61051 -39.98378 -37.90174 -37.65038 -36.15203 -34.73351 -33.50300 -32.49872 -29.78334 -29.08608 -28.56372 -26.30428 -24.86840 -23.96233 -23.06077 -21.04956 -20.16701 -18.48121 -18.39673 -18.08876 -17.33732 -16.98280 -16.62786 -16.13598 -15.97470 -15.38688 -15.05791 -14.69094 -14.53675 -14.41028 -14.10583 -13.62743 -13.44633 -13.34555 -12.99087 -12.95550 -12.69763 -12.61225 -12.46628 -12.33098 -12.24772 -12.07955 -11.82443 -11.72877 -11.63003 -11.32628 -11.12767 -10.89966 -10.75378 -10.66481 -10.43199 -9.86573 -8.87222 -8.09363 -6.12255 -0.36951 -0.11146 0.65199 1.06682 1.43015 1.44160 1.54216 2.32725 2.46979 3.11822 3.20071 3.29193 3.53230 3.57410 3.84500 3.89122 3.96718 3.98562 4.17319 4.37550 4.50408 4.55023 4.63294 4.69666 4.74555 4.79190 4.86796 4.95637 5.03440 5.14837 5.16961 5.18449 5.21780 5.36628 5.56444 5.60434 5.78382 5.88759 6.18375 6.50024 6.65584 6.75502 6.97287 7.50185 8.99280 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004223 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.575619 B = 6629.297686 C = 7784.482111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.059 0.941 9 C 0.201 3.799 10 N -0.526 5.526 11 C 0.093 3.907 12 C 0.156 3.844 13 N -0.465 5.465 14 C 0.117 3.883 15 C -0.082 4.082 16 Cl -0.030 7.030 17 C -0.051 4.051 18 C -0.081 4.081 19 Cl -0.032 7.032 20 C 0.095 3.905 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.159 4.159 25 H 0.261 0.739 26 H -0.007 1.007 27 H 0.004 0.996 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.190 0.810 31 H 0.180 0.820 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 -18.302 1.486 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.248 5.248 11 C -0.036 4.036 12 C 0.018 3.982 13 N -0.174 5.174 14 C -0.041 4.041 15 C -0.112 4.112 16 Cl -0.002 7.002 17 C -0.078 4.078 18 C -0.111 4.111 19 Cl -0.003 7.003 20 C -0.014 4.014 21 C -0.178 4.178 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.198 4.198 25 H 0.070 0.930 26 H 0.011 0.989 27 H 0.021 0.979 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.207 0.793 31 H 0.198 0.802 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.100 -17.418 0.831 19.669 hybrid contribution -0.376 0.143 0.652 0.766 sum 8.724 -17.275 1.483 19.410 Atomic orbital electron populations 1.70059 1.07338 1.27365 1.52629 1.25689 0.95523 1.02247 0.95749 0.85636 0.78838 0.79621 0.78097 1.20517 1.21079 1.19036 1.21338 0.93329 0.90684 1.47619 0.92306 1.19653 0.89908 0.88257 0.94632 1.62011 1.43184 1.04421 1.15234 1.21039 0.92066 0.91598 0.98900 1.21245 0.95686 0.91638 0.89654 1.67832 1.07894 1.28429 1.13281 1.23360 0.91795 0.89048 0.99930 1.22008 0.95356 0.96849 0.96945 1.98395 1.44727 1.70054 1.86978 1.21644 0.92132 0.99611 0.94404 1.21849 0.98660 0.98440 0.92153 1.98381 1.77095 1.93314 1.31486 1.22622 0.95469 0.97252 0.86020 1.22849 0.99657 1.00737 0.94589 1.22077 0.98334 0.99248 0.95852 1.21955 0.97531 0.99582 0.95732 1.23025 0.99336 1.00703 0.96754 0.93043 0.98853 0.97893 0.91362 0.90899 0.79275 0.80223 0.90109 0.89392 0.93315 0.92633 0.90824 0.90416 0.92373 0.91307 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.49 -27.06 6.55 25.60 0.17 -26.89 16 8 H 0.06 3.28 7.14 -2.91 -0.02 3.26 16 9 C 0.20 10.29 4.44 85.56 0.38 10.67 16 10 N -0.53 -22.23 4.36 -872.38 -3.80 -26.03 16 11 C 0.09 3.38 5.03 85.56 0.43 3.81 16 12 C 0.16 4.96 6.03 42.57 0.26 5.22 16 13 N -0.47 -14.95 10.27 -183.71 -1.89 -16.84 16 14 C 0.12 2.83 10.99 84.72 0.93 3.76 16 15 C -0.08 -1.67 6.34 22.41 0.14 -1.53 16 16 Cl -0.03 -0.49 28.99 -2.72 -0.08 -0.57 16 17 C -0.05 -1.04 9.79 22.51 0.22 -0.81 16 18 C -0.08 -2.06 5.82 22.41 0.13 -1.93 16 19 Cl -0.03 -0.73 23.74 -2.72 -0.06 -0.80 16 20 C 0.10 3.49 2.41 46.23 0.11 3.60 16 21 C -0.14 -5.47 5.76 31.70 0.18 -5.28 16 22 C -0.12 -3.66 6.80 31.32 0.21 -3.45 16 23 C -0.11 -3.24 6.80 31.32 0.21 -3.02 16 24 C -0.16 -5.45 5.31 31.67 0.17 -5.28 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H -0.01 -0.37 7.34 -2.39 -0.02 -0.39 16 27 H 0.00 0.19 5.06 -2.39 -0.01 0.18 16 28 H 0.07 2.28 5.15 -2.39 -0.01 2.27 16 29 H 0.07 2.89 7.38 -2.39 -0.02 2.87 16 30 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.08 2.74 5.85 -2.39 -0.01 2.72 16 33 H 0.09 4.16 4.47 -2.39 -0.01 4.15 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 2.08 6.08 -2.38 -0.01 2.06 16 40 H 0.05 2.19 5.37 -2.39 -0.01 2.18 16 Total: -1.00 -62.12 338.00 1.56 -60.55 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.07 Total: 12.45 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.01 Total: -20.38 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.40 Total: -97.74 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.14 Total: -1.37 kcal Total: -62.12 1.56 -60.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232573157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.236 kcal (2) G-P(sol) polarization free energy of solvation -62.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds