Wall clock time and date at job start Tue Mar 31 2020 16:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47291 * 2 1 4 4 C 1.50700 * 109.47084 * 180.02562 * 3 2 1 5 5 O 1.21344 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.46465 * 119.99793 * 179.97438 * 4 3 2 7 7 C 1.40287 * 120.15168 * 0.02562 * 6 4 3 8 8 C 1.37747 * 119.87848 * 180.02562 * 7 6 4 9 9 O 1.36071 * 119.90596 * 180.02562 * 8 7 6 10 10 C 1.39687 * 120.18658 * 0.02562 * 8 7 6 11 11 O 1.35739 * 119.84993 * 180.02562 * 10 8 7 12 12 C 1.38598 * 120.29963 * 0.02562 * 10 8 7 13 13 C 1.38439 * 120.12509 * 359.68535 * 12 10 8 14 14 O 1.35664 * 120.09512 * 180.31480 * 13 12 10 15 15 C 1.42890 * 117.00408 * 356.74886 * 14 13 12 16 16 H 1.09001 * 109.47148 * 26.96537 * 15 14 13 17 17 C 1.50705 * 109.47557 * 146.96479 * 15 14 13 18 18 H 1.07999 * 119.99393 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00140 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00054 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00014 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47015 * 60.00327 * 21 19 17 23 23 H 1.48496 * 109.47086 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46861 * 300.00298 * 21 19 17 25 25 C 1.52999 * 109.47125 * 266.96882 * 15 14 13 26 26 Cl 1.80297 * 109.47369 * 64.99539 * 25 15 14 27 27 H 1.08996 * 109.46836 * 59.99588 * 1 2 3 28 28 H 1.08998 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46818 * 300.00094 * 1 2 3 30 30 H 1.08995 * 109.46983 * 239.99970 * 2 1 3 31 31 H 1.09003 * 109.47248 * 119.99894 * 2 1 3 32 32 H 1.08999 * 109.46442 * 59.99887 * 3 2 1 33 33 H 1.09003 * 109.46888 * 300.00114 * 3 2 1 34 34 H 1.08005 * 120.05954 * 359.97438 * 7 6 4 35 35 H 0.96701 * 113.99576 * 90.00449 * 9 8 7 36 36 H 0.96709 * 114.00027 * 89.99773 * 11 10 8 37 37 H 1.08009 * 119.93705 * 179.97438 * 12 10 8 38 38 H 0.97006 * 120.00218 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47077 * 185.00034 * 25 15 14 40 40 H 1.09003 * 109.46887 * 304.99811 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1538 0.3916 -0.0006 6 6 4.2794 2.7109 -0.0013 7 6 3.5812 3.9277 -0.0008 8 6 4.2756 5.1173 -0.0020 9 8 3.5989 6.2979 -0.0010 10 6 5.6725 5.1152 -0.0042 11 8 6.3499 6.2915 -0.0049 12 6 6.3699 3.9175 -0.0058 13 6 5.6848 2.7145 0.0014 14 8 6.3681 1.5426 0.0063 15 6 7.7929 1.6219 -0.0685 16 1 8.1263 2.5718 0.3495 17 6 8.4011 0.4873 0.7150 18 1 7.7633 -0.2236 1.2192 19 6 9.7717 0.3562 0.7871 20 7 10.5483 1.2216 0.1726 21 14 10.5256 -1.0507 1.7576 22 1 10.0710 -2.3445 1.1880 23 1 12.0063 -0.9681 1.6799 24 1 10.0989 -0.9574 3.1769 25 6 8.2329 1.5256 -1.5307 26 17 7.6269 2.9619 -2.4366 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.5011 3.9317 -0.0004 35 1 3.4048 6.6391 0.8827 36 1 6.5475 6.6321 0.8784 37 1 7.4500 3.9227 -0.0079 38 1 11.5127 1.1295 0.2237 39 1 9.3214 1.4967 -1.5814 40 1 7.8243 0.6175 -1.9740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233496417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:25 Heat of formation + Delta-G solvation = -155.124405 kcal Electronic energy + Delta-G solvation = -26314.244447 eV Core-core repulsion = 22313.698760 eV Total energy + Delta-G solvation = -4000.545687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41625 -38.86619 -38.25673 -36.78875 -35.42356 -34.79183 -34.29601 -33.40640 -30.64416 -29.79101 -28.39260 -27.54611 -25.37233 -23.71906 -23.04701 -21.45920 -20.85050 -19.59187 -18.71013 -17.68114 -17.09171 -16.78209 -16.07333 -15.63316 -15.50566 -15.01686 -14.75370 -14.57268 -14.53244 -14.07194 -13.68058 -13.57256 -13.13186 -13.08829 -12.65902 -12.47709 -12.13887 -11.95410 -11.81206 -11.65564 -11.53925 -11.18510 -11.16682 -11.11769 -10.91139 -10.73162 -10.68271 -10.33428 -10.17519 -9.76560 -9.47481 -9.28826 -9.11751 -8.71197 -8.51310 -7.53221 -6.47004 -4.54456 0.89282 1.57937 2.70626 3.12944 3.19233 3.22229 3.35884 3.87075 3.88628 4.14994 4.23969 4.28207 4.39873 4.89128 4.90988 5.02168 5.04502 5.27123 5.46676 5.49790 5.55745 5.65772 5.67808 5.85530 5.92191 6.00295 6.05515 6.15735 6.16704 6.19647 6.31797 6.40073 6.48702 6.73428 6.79006 7.07376 7.49584 7.51485 7.69411 7.89440 8.03990 8.18739 8.62176 9.13140 10.60161 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.005046 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.165449 B = 5547.585167 C = 7411.460791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.163 4.163 4 C 0.390 3.610 5 O -0.427 6.427 6 C -0.223 4.223 7 C -0.052 4.052 8 C 0.006 3.994 9 O -0.486 6.486 10 C 0.151 3.849 11 O -0.487 6.487 12 C -0.222 4.222 13 C 0.226 3.774 14 O -0.270 6.270 15 C 0.199 3.801 16 H 0.051 0.949 17 C -0.520 4.520 18 H 0.079 0.921 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.038 4.038 26 Cl -0.238 7.238 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.375 0.625 36 H 0.388 0.612 37 H 0.156 0.844 38 H 0.273 0.727 39 H 0.136 0.864 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 5.616 2.379 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.200 4.200 4 C 0.266 3.734 5 O -0.300 6.300 6 C -0.225 4.225 7 C -0.071 4.071 8 C -0.039 4.039 9 O -0.294 6.294 10 C 0.105 3.895 11 O -0.297 6.297 12 C -0.241 4.241 13 C 0.175 3.825 14 O -0.180 6.180 15 C 0.145 3.855 16 H 0.069 0.931 17 C -0.557 4.557 18 H 0.097 0.903 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.101 4.101 26 Cl -0.212 7.212 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.157 0.843 35 H 0.228 0.772 36 H 0.245 0.755 37 H 0.173 0.827 38 H 0.083 0.917 39 H 0.153 0.847 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.034 4.846 1.053 13.945 hybrid contribution 0.711 -0.030 1.264 1.451 sum -12.323 4.815 2.317 13.432 Atomic orbital electron populations 1.21784 0.95821 1.01650 1.01587 1.21340 0.95119 0.95502 1.03459 1.22045 0.94573 0.99392 1.04027 1.21937 0.90586 0.87715 0.73155 1.90640 1.71351 1.33449 1.34605 1.19729 0.91014 0.95156 1.16560 1.21202 0.99830 0.89929 0.96145 1.18330 0.88982 0.85640 1.10958 1.85000 1.76184 1.35741 1.32452 1.18738 0.88850 0.85307 0.96603 1.84802 1.76302 1.35653 1.32945 1.21734 1.02662 0.90863 1.08820 1.19194 0.90593 0.86271 0.86456 1.86381 1.23287 1.25204 1.83096 1.20712 0.72949 1.00348 0.91523 0.93131 1.20969 0.91446 1.11876 1.31433 0.90322 1.24975 0.96478 0.96945 0.95471 1.69786 1.05349 1.35436 1.42123 0.86207 0.77673 0.81455 0.80263 1.19634 1.20839 1.19706 1.25785 1.05153 0.85868 0.93259 1.98656 1.90903 1.51414 1.80247 0.92795 0.92685 0.92828 0.91345 0.91334 0.88926 0.88888 0.84303 0.77171 0.75533 0.82713 0.91690 0.84654 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.35 5.22 -26.73 -0.14 -1.49 16 3 C -0.16 -1.88 4.30 -27.88 -0.12 -2.00 16 4 C 0.39 6.51 7.09 -31.00 -0.22 6.29 16 5 O -0.43 -8.90 14.77 -16.50 -0.24 -9.14 16 6 C -0.22 -3.83 5.88 -104.95 -0.62 -4.45 16 7 C -0.05 -0.73 9.38 -38.99 -0.37 -1.10 16 8 C 0.01 0.09 6.70 -39.22 -0.26 -0.18 16 9 O -0.49 -6.06 13.28 -34.66 -0.46 -6.52 16 10 C 0.15 2.47 6.72 -38.91 -0.26 2.21 16 11 O -0.49 -7.18 13.26 -33.62 -0.45 -7.63 16 12 C -0.22 -4.21 6.96 -39.37 -0.27 -4.48 16 13 C 0.23 4.57 5.99 -38.64 -0.23 4.34 16 14 O -0.27 -6.34 7.78 -40.69 -0.32 -6.66 16 15 C 0.20 4.84 2.19 -27.88 -0.06 4.78 16 16 H 0.05 1.27 5.40 -51.93 -0.28 0.99 16 17 C -0.52 -13.59 8.89 -34.44 -0.31 -13.90 16 18 H 0.08 2.11 7.81 -52.49 -0.41 1.70 16 19 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 20 N -0.89 -22.95 11.29 55.43 0.63 -22.32 16 21 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 25 C -0.04 -0.88 6.17 37.16 0.23 -0.65 16 26 Cl -0.24 -5.09 25.59 -51.86 -1.33 -6.41 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.14 1.46 7.04 -52.48 -0.37 1.09 16 35 H 0.38 2.66 9.07 45.56 0.41 3.08 16 36 H 0.39 3.56 9.06 45.56 0.41 3.97 16 37 H 0.16 3.19 5.08 -52.48 -0.27 2.92 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.14 3.33 5.95 -51.93 -0.31 3.02 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -31.16 350.17 -7.58 -38.74 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.32 Total: 9.74 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.36 Total: -10.04 kcal Atomic # 7 Polarization: -22.95 SS G_CDS: 0.63 Total: -22.32 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.47 Total: -29.95 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 17 Polarization: -5.09 SS G_CDS: -1.33 Total: -6.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.16 -7.58 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233496417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.381 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds