Wall clock time and date at job start Tue Mar 31 2020 16:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47291 * 2 1 4 4 C 1.50700 * 109.47084 * 180.02562 * 3 2 1 5 5 O 1.21344 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.46465 * 119.99793 * 179.97438 * 4 3 2 7 7 C 1.40287 * 120.15168 * 0.02562 * 6 4 3 8 8 C 1.37747 * 119.87848 * 180.02562 * 7 6 4 9 9 O 1.36071 * 119.90596 * 180.02562 * 8 7 6 10 10 C 1.39687 * 120.18658 * 0.02562 * 8 7 6 11 11 O 1.35739 * 119.84993 * 180.02562 * 10 8 7 12 12 C 1.38598 * 120.29963 * 0.02562 * 10 8 7 13 13 C 1.38439 * 120.12509 * 359.68535 * 12 10 8 14 14 O 1.35664 * 120.09512 * 180.31480 * 13 12 10 15 15 C 1.42890 * 117.00408 * 356.74886 * 14 13 12 16 16 H 1.09001 * 109.47148 * 26.96537 * 15 14 13 17 17 C 1.50705 * 109.47557 * 146.96479 * 15 14 13 18 18 H 1.07999 * 119.99393 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00140 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00054 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00014 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47015 * 60.00327 * 21 19 17 23 23 H 1.48496 * 109.47086 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46861 * 300.00298 * 21 19 17 25 25 C 1.52999 * 109.47125 * 266.96882 * 15 14 13 26 26 Cl 1.80297 * 109.47369 * 64.99539 * 25 15 14 27 27 H 1.08996 * 109.46836 * 59.99588 * 1 2 3 28 28 H 1.08998 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46818 * 300.00094 * 1 2 3 30 30 H 1.08995 * 109.46983 * 239.99970 * 2 1 3 31 31 H 1.09003 * 109.47248 * 119.99894 * 2 1 3 32 32 H 1.08999 * 109.46442 * 59.99887 * 3 2 1 33 33 H 1.09003 * 109.46888 * 300.00114 * 3 2 1 34 34 H 1.08005 * 120.05954 * 359.97438 * 7 6 4 35 35 H 0.96701 * 113.99576 * 90.00449 * 9 8 7 36 36 H 0.96709 * 114.00027 * 89.99773 * 11 10 8 37 37 H 1.08009 * 119.93705 * 179.97438 * 12 10 8 38 38 H 0.97006 * 120.00218 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47077 * 185.00034 * 25 15 14 40 40 H 1.09003 * 109.46887 * 304.99811 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1538 0.3916 -0.0006 6 6 4.2794 2.7109 -0.0013 7 6 3.5812 3.9277 -0.0008 8 6 4.2756 5.1173 -0.0020 9 8 3.5989 6.2979 -0.0010 10 6 5.6725 5.1152 -0.0042 11 8 6.3499 6.2915 -0.0049 12 6 6.3699 3.9175 -0.0058 13 6 5.6848 2.7145 0.0014 14 8 6.3681 1.5426 0.0063 15 6 7.7929 1.6219 -0.0685 16 1 8.1263 2.5718 0.3495 17 6 8.4011 0.4873 0.7150 18 1 7.7633 -0.2236 1.2192 19 6 9.7717 0.3562 0.7871 20 7 10.5483 1.2216 0.1726 21 14 10.5256 -1.0507 1.7576 22 1 10.0710 -2.3445 1.1880 23 1 12.0063 -0.9681 1.6799 24 1 10.0989 -0.9574 3.1769 25 6 8.2329 1.5256 -1.5307 26 17 7.6269 2.9619 -2.4366 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.5011 3.9317 -0.0004 35 1 3.4048 6.6391 0.8827 36 1 6.5475 6.6321 0.8784 37 1 7.4500 3.9227 -0.0079 38 1 11.5127 1.1295 0.2237 39 1 9.3214 1.4967 -1.5814 40 1 7.8243 0.6175 -1.9740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233496417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:22 Heat of formation + Delta-G solvation = -176.030455 kcal Electronic energy + Delta-G solvation = -26315.151001 eV Core-core repulsion = 22313.698760 eV Total energy + Delta-G solvation = -4001.452242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.75000 -40.11464 -39.76144 -37.90052 -36.92021 -36.41544 -35.38128 -35.14418 -31.93287 -31.56629 -29.66643 -28.58566 -27.34086 -24.97444 -24.44112 -22.56019 -22.33510 -20.79061 -19.98579 -18.96780 -18.82949 -18.16502 -17.53608 -16.95331 -16.70855 -16.33770 -16.23334 -16.05426 -15.77776 -15.44480 -15.21824 -14.76396 -14.59979 -14.30851 -14.10011 -13.90117 -13.66189 -13.34389 -13.08273 -12.90717 -12.77765 -12.69976 -12.61496 -12.57400 -12.23076 -12.07799 -11.94541 -11.59571 -11.56200 -11.34858 -11.22960 -11.00926 -10.67642 -10.39913 -9.83395 -8.94448 -8.41936 -6.57727 -0.38825 0.31229 1.35533 1.40218 1.44645 1.49274 1.52939 2.21472 2.56025 2.62991 2.92405 2.98015 3.16543 3.27461 3.78316 4.02556 4.09798 4.18416 4.20867 4.29012 4.32768 4.50559 4.69888 4.72366 4.74924 4.78756 4.83524 4.88005 4.96490 5.11715 5.19351 5.25562 5.32912 5.34308 5.49160 5.51594 5.56725 5.77588 6.39097 6.62237 6.71033 6.81238 6.99720 7.14466 8.64646 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.005046 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.165449 B = 5547.585167 C = 7411.460791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.153 4.153 4 C 0.386 3.614 5 O -0.483 6.483 6 C -0.233 4.233 7 C -0.031 4.031 8 C 0.024 3.976 9 O -0.487 6.487 10 C 0.153 3.847 11 O -0.496 6.496 12 C -0.239 4.239 13 C 0.186 3.814 14 O -0.296 6.296 15 C 0.207 3.793 16 H 0.036 0.964 17 C -0.548 4.548 18 H 0.060 0.940 19 C 0.030 3.970 20 N -0.907 5.907 21 Si 0.976 3.024 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.269 1.269 25 C -0.027 4.027 26 Cl -0.220 7.220 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.187 0.813 35 H 0.405 0.595 36 H 0.412 0.588 37 H 0.128 0.872 38 H 0.277 0.723 39 H 0.121 0.879 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 7.368 2.823 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.189 4.189 4 C 0.266 3.734 5 O -0.360 6.360 6 C -0.235 4.235 7 C -0.049 4.049 8 C -0.021 4.021 9 O -0.298 6.298 10 C 0.107 3.893 11 O -0.310 6.310 12 C -0.258 4.258 13 C 0.137 3.863 14 O -0.207 6.207 15 C 0.152 3.848 16 H 0.054 0.946 17 C -0.585 4.585 18 H 0.079 0.921 19 C -0.171 4.171 20 N -0.544 5.544 21 Si 0.800 3.200 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.090 4.090 26 Cl -0.194 7.194 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.204 0.796 35 H 0.262 0.738 36 H 0.273 0.727 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.770 6.659 1.525 17.186 hybrid contribution 1.439 -0.334 1.125 1.857 sum -14.331 6.325 2.651 15.887 Atomic orbital electron populations 1.21734 0.93127 1.02290 1.02969 1.21335 0.97328 0.95374 1.01587 1.22106 0.90067 0.99939 1.06825 1.22778 0.93055 0.86604 0.71006 1.90629 1.72950 1.35124 1.37305 1.20113 0.89929 0.97040 1.16381 1.21585 1.01817 0.88019 0.93479 1.18291 0.88136 0.86804 1.08917 1.84938 1.75380 1.34498 1.35023 1.18834 0.89883 0.84804 0.95810 1.84731 1.76356 1.34726 1.35207 1.21526 1.01445 0.91849 1.11017 1.19618 0.91950 0.85577 0.89128 1.86319 1.22338 1.27348 1.84719 1.20393 0.74106 0.98840 0.91453 0.94627 1.21140 0.92142 1.12587 1.32660 0.92126 1.25690 0.96437 0.98983 0.96027 1.69863 1.05648 1.36440 1.42489 0.85315 0.77305 0.78503 0.78908 1.19580 1.19559 1.19389 1.25436 1.03967 0.86293 0.93298 1.98642 1.90726 1.50341 1.79719 0.91495 0.92585 0.91240 0.93520 0.93234 0.85445 0.86043 0.79596 0.73774 0.72720 0.85397 0.91302 0.86134 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.59 5.22 30.60 0.16 -2.43 16 3 C -0.15 -3.05 4.30 29.85 0.13 -2.92 16 4 C 0.39 12.71 7.09 27.83 0.20 12.90 16 5 O -0.48 -21.10 14.77 17.81 0.26 -20.83 16 6 C -0.23 -7.79 5.88 -20.07 -0.12 -7.91 16 7 C -0.03 -0.74 9.38 22.65 0.21 -0.53 16 8 C 0.02 0.62 6.70 22.50 0.15 0.77 16 9 O -0.49 -9.70 13.28 -80.30 -1.07 -10.76 16 10 C 0.15 4.80 6.72 22.71 0.15 4.95 16 11 O -0.50 -13.80 13.26 -76.58 -1.02 -14.82 16 12 C -0.24 -9.31 6.96 22.40 0.16 -9.15 16 13 C 0.19 7.78 5.99 22.88 0.14 7.92 16 14 O -0.30 -14.81 7.78 -68.76 -0.54 -15.34 16 15 C 0.21 10.73 2.19 29.85 0.07 10.80 16 16 H 0.04 1.94 5.40 -2.39 -0.01 1.92 16 17 C -0.55 -30.33 8.89 25.60 0.23 -30.10 16 18 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 19 C 0.03 1.58 5.29 84.65 0.45 2.03 16 20 N -0.91 -48.22 11.29 21.45 0.24 -47.98 16 21 Si 0.98 41.76 29.54 68.60 2.03 43.79 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.03 -1.33 6.17 71.98 0.44 -0.88 16 26 Cl -0.22 -9.70 25.59 -2.72 -0.07 -9.77 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.12 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.19 2.69 7.04 -2.91 -0.02 2.67 16 35 H 0.40 3.50 9.07 -74.06 -0.67 2.83 16 36 H 0.41 6.76 9.06 -74.05 -0.67 6.09 16 37 H 0.13 5.61 5.08 -2.91 -0.01 5.60 16 38 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 39 H 0.12 6.25 5.95 -2.39 -0.01 6.23 16 40 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -72.45 350.17 2.69 -69.76 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.23 Total: 21.90 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.07 Total: -15.94 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.24 Total: -47.98 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -2.35 Total: -61.76 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: -9.70 SS G_CDS: -0.07 Total: -9.77 kcal Total: -72.45 2.69 -69.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233496417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.266 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds