Wall clock time and date at job start Tue Mar 31 2020 15:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35618 * 116.99795 * 2 1 4 4 C 1.38216 * 120.11375 * 0.02562 * 3 2 1 5 5 C 1.38910 * 120.22035 * 180.02562 * 4 3 2 6 6 O 1.35671 * 119.78579 * 179.97438 * 5 4 3 7 7 C 1.38972 * 120.43847 * 0.02562 * 5 4 3 8 8 C 1.50691 * 119.89426 * 179.69839 * 7 5 4 9 9 C 1.38177 * 120.20925 * 359.97438 * 7 5 4 10 10 O 1.35621 * 120.10740 * 179.97438 * 9 7 5 11 11 C 1.42894 * 116.99800 * 106.34671 * 10 9 7 12 12 H 1.08997 * 109.47872 * 36.86776 * 11 10 9 13 13 C 1.50698 * 109.47214 * 156.87249 * 11 10 9 14 14 H 1.08001 * 119.99849 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00317 * 179.97438 * 13 11 10 16 16 N 1.31523 * 119.99930 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00214 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47054 * 90.00130 * 17 15 13 19 19 H 1.48509 * 109.47021 * 209.99985 * 17 15 13 20 20 H 1.48494 * 109.46849 * 329.99756 * 17 15 13 21 21 C 1.53003 * 109.46897 * 276.87044 * 11 10 9 22 22 Cl 1.80302 * 109.47224 * 67.25058 * 21 11 10 23 23 C 1.40741 * 120.11006 * 180.02562 * 3 2 1 24 24 C 1.46145 * 120.21385 * 359.96150 * 23 3 2 25 25 C 1.50691 * 120.00161 * 96.36644 * 24 23 3 26 26 O 1.21378 * 119.99513 * 276.36640 * 24 23 3 27 27 H 1.09005 * 109.47091 * 60.00166 * 1 2 3 28 28 H 1.08995 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47353 * 300.00002 * 1 2 3 30 30 H 1.08000 * 119.88891 * 0.03817 * 4 3 2 31 31 H 0.96703 * 113.99858 * 270.02677 * 6 5 4 32 32 H 1.08995 * 109.47349 * 82.88556 * 8 7 5 33 33 H 1.09004 * 109.47011 * 202.88347 * 8 7 5 34 34 H 1.08998 * 109.47522 * 322.88145 * 8 7 5 35 35 H 0.97002 * 120.00038 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.47238 * 187.24628 * 21 11 10 37 37 H 1.08994 * 109.47276 * 307.24422 * 21 11 10 38 38 H 1.09007 * 109.47194 * 94.96664 * 25 24 23 39 39 H 1.08993 * 109.47155 * 214.96464 * 25 24 23 40 40 H 1.08998 * 109.47527 * 334.96881 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2941 2.3690 0.0005 5 6 1.9224 3.6079 0.0000 6 8 1.1770 4.7416 0.0000 7 6 3.3094 3.6939 -0.0016 8 6 3.9782 5.0443 -0.0091 9 6 4.0772 2.5451 -0.0022 10 8 5.4307 2.6314 -0.0043 11 6 6.1027 2.3157 1.2166 12 1 5.5872 1.4937 1.7132 13 6 7.5231 1.9106 0.9180 14 1 7.8772 1.8954 -0.1023 15 6 8.3708 1.5595 1.9471 16 7 7.9399 1.5786 3.1896 17 14 10.1318 1.0581 1.5769 18 1 11.0039 2.2597 1.6001 19 1 10.5966 0.0892 2.6020 20 1 10.1948 0.4265 0.2344 21 6 6.1037 3.5430 2.1302 22 17 4.4175 3.8996 2.6597 23 6 3.4499 1.2848 -0.0005 24 6 4.2528 0.0637 -0.0003 25 6 4.7873 -0.4870 -1.2972 26 8 4.4892 -0.5069 1.0446 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2155 2.3125 0.0016 31 1 0.9603 5.0698 -0.8834 32 1 4.0263 5.4315 1.0086 33 1 4.9876 4.9476 -0.4091 34 1 3.4046 5.7304 -0.6322 35 1 8.5362 1.3312 3.9136 36 1 6.7247 3.3450 3.0040 37 1 6.5030 4.3997 1.5874 38 1 5.8046 -0.1278 -1.4527 39 1 4.7889 -1.5762 -1.2562 40 1 4.1550 -0.1554 -2.1208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234791734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:26 Heat of formation + Delta-G solvation = -138.293227 kcal Electronic energy + Delta-G solvation = -27467.508755 eV Core-core repulsion = 23467.692923 eV Total energy + Delta-G solvation = -3999.815833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57310 -38.71067 -38.45170 -37.60621 -35.24165 -34.66685 -33.29468 -31.76525 -30.51045 -29.35807 -28.64244 -27.41874 -25.60979 -25.28925 -23.32135 -21.72905 -20.78582 -19.36565 -18.71022 -17.02828 -16.87723 -16.83707 -16.07218 -15.73858 -15.72544 -14.86359 -14.70892 -14.47064 -14.18442 -13.99390 -13.82577 -13.44420 -13.14228 -12.99012 -12.43064 -12.21457 -12.08751 -11.97283 -11.76920 -11.74437 -11.62834 -11.46427 -11.34663 -11.06546 -10.96924 -10.55565 -10.44184 -10.36625 -10.04345 -9.43755 -9.22649 -9.17339 -8.91834 -8.59065 -8.11420 -7.65362 -6.35134 -4.44069 1.24551 1.59231 2.53481 3.16655 3.20377 3.24633 3.28264 3.45956 3.61740 4.11753 4.25315 4.57425 4.75268 4.99558 5.02909 5.10333 5.13679 5.33283 5.40192 5.50496 5.56203 5.68395 5.86812 5.92000 6.02115 6.17490 6.20802 6.25882 6.32992 6.37362 6.47822 6.50700 6.75955 6.79516 6.94892 7.23811 7.35710 7.57400 7.75885 7.82987 8.08363 8.34423 8.71254 9.23239 10.71754 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.005668 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.357600 B = 4938.993402 C = 6118.973336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.174 3.826 4 C -0.254 4.254 5 C 0.161 3.839 6 O -0.491 6.491 7 C -0.142 4.142 8 C -0.104 4.104 9 C 0.211 3.789 10 O -0.332 6.332 11 C 0.217 3.783 12 H 0.052 0.948 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.042 4.042 22 Cl -0.235 7.235 23 C -0.224 4.224 24 C 0.422 3.578 25 C -0.189 4.189 26 O -0.436 6.436 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.386 0.614 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 2.211 -9.072 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.128 3.872 4 C -0.273 4.273 5 C 0.116 3.884 6 O -0.301 6.301 7 C -0.144 4.144 8 C -0.161 4.161 9 C 0.165 3.835 10 O -0.249 6.249 11 C 0.164 3.836 12 H 0.069 0.931 13 C -0.559 4.559 14 H 0.094 0.906 15 C -0.138 4.138 16 N -0.520 5.520 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.104 4.104 22 Cl -0.209 7.209 23 C -0.226 4.226 24 C 0.296 3.704 25 C -0.246 4.246 26 O -0.308 6.308 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.242 0.758 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.665 1.684 -7.791 14.128 hybrid contribution 0.293 0.040 -0.361 0.467 sum -11.372 1.724 -8.152 14.098 Atomic orbital electron populations 1.23057 0.78323 1.03838 1.01408 1.86023 1.21421 1.26636 1.88412 1.18279 0.89872 0.84047 0.95005 1.21097 1.00094 0.91448 1.14646 1.17771 0.88180 0.84836 0.97646 1.84757 1.71947 1.40393 1.32993 1.20012 0.92202 0.96274 1.05866 1.20739 1.00217 0.91840 1.03287 1.18022 0.85144 0.88709 0.91663 1.85927 1.12251 1.88699 1.38044 1.20627 0.92818 0.92025 0.78157 0.93080 1.20905 0.93560 1.46592 0.94804 0.90616 1.24969 0.99704 0.94509 0.94659 1.69823 1.36544 1.46541 0.99064 0.86210 0.82601 0.78555 0.78518 1.20217 1.20782 1.19387 1.25836 0.80230 1.00533 1.03812 1.98640 1.33540 1.95923 1.92831 1.20136 0.91485 0.96348 1.14625 1.21790 0.75589 0.82348 0.90714 1.22157 1.03844 1.02302 0.96336 1.90607 1.47960 1.57173 1.35050 0.92623 0.88268 0.92521 0.84888 0.75776 0.89950 0.90998 0.92898 0.91855 0.85029 0.90784 0.87767 0.89988 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.90 9.95 -18.55 -0.18 -5.09 16 3 C 0.17 3.01 6.70 -38.64 -0.26 2.75 16 4 C -0.25 -3.84 8.95 -39.34 -0.35 -4.19 16 5 C 0.16 2.53 6.67 -39.06 -0.26 2.27 16 6 O -0.49 -6.39 12.63 -18.71 -0.24 -6.63 16 7 C -0.14 -2.54 4.23 -104.38 -0.44 -2.98 16 8 C -0.10 -1.71 8.72 36.00 0.31 -1.40 16 9 C 0.21 4.28 4.67 -38.64 -0.18 4.10 16 10 O -0.33 -7.49 8.23 -18.56 -0.15 -7.64 16 11 C 0.22 5.43 2.01 -27.88 -0.06 5.37 16 12 H 0.05 1.46 6.10 -51.93 -0.32 1.14 16 13 C -0.52 -13.69 8.89 -34.44 -0.31 -14.00 16 14 H 0.08 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.07 1.71 5.28 -17.82 -0.09 1.62 16 16 N -0.88 -24.09 11.29 55.43 0.63 -23.47 16 17 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.04 -0.97 6.09 37.16 0.23 -0.75 16 22 Cl -0.24 -5.09 22.95 -51.86 -1.19 -6.28 16 23 C -0.22 -4.46 5.38 -104.82 -0.56 -5.02 16 24 C 0.42 8.80 4.83 -31.14 -0.15 8.65 16 25 C -0.19 -3.10 10.25 36.00 0.37 -2.73 16 26 O -0.44 -10.78 16.79 5.47 0.09 -10.69 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 30 H 0.13 1.62 6.27 -52.49 -0.33 1.29 16 31 H 0.39 2.94 9.06 45.56 0.41 3.35 16 32 H 0.08 1.44 5.85 -51.93 -0.30 1.14 16 33 H 0.07 1.23 7.30 -51.93 -0.38 0.85 16 34 H 0.05 0.70 7.75 -51.93 -0.40 0.30 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.13 3.36 5.91 -51.93 -0.31 3.06 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -31.72 345.52 -5.70 -37.42 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.08 Total: 6.90 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.76 Total: -5.03 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.63 Total: -23.47 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.48 Total: -30.05 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -5.09 SS G_CDS: -1.19 Total: -6.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.72 -5.70 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234791734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.874 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds