Wall clock time and date at job start Tue Mar 31 2020 15:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35618 * 116.99795 * 2 1 4 4 C 1.38216 * 120.11375 * 0.02562 * 3 2 1 5 5 C 1.38910 * 120.22035 * 180.02562 * 4 3 2 6 6 O 1.35671 * 119.78579 * 179.97438 * 5 4 3 7 7 C 1.38972 * 120.43847 * 0.02562 * 5 4 3 8 8 C 1.50691 * 119.89426 * 179.69839 * 7 5 4 9 9 C 1.38177 * 120.20925 * 359.97438 * 7 5 4 10 10 O 1.35621 * 120.10740 * 179.97438 * 9 7 5 11 11 C 1.42894 * 116.99800 * 106.34671 * 10 9 7 12 12 H 1.08997 * 109.47872 * 36.86776 * 11 10 9 13 13 C 1.50698 * 109.47214 * 156.87249 * 11 10 9 14 14 H 1.08001 * 119.99849 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00317 * 179.97438 * 13 11 10 16 16 N 1.31523 * 119.99930 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00214 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47054 * 90.00130 * 17 15 13 19 19 H 1.48509 * 109.47021 * 209.99985 * 17 15 13 20 20 H 1.48494 * 109.46849 * 329.99756 * 17 15 13 21 21 C 1.53003 * 109.46897 * 276.87044 * 11 10 9 22 22 Cl 1.80302 * 109.47224 * 67.25058 * 21 11 10 23 23 C 1.40741 * 120.11006 * 180.02562 * 3 2 1 24 24 C 1.46145 * 120.21385 * 359.96150 * 23 3 2 25 25 C 1.50691 * 120.00161 * 96.36644 * 24 23 3 26 26 O 1.21378 * 119.99513 * 276.36640 * 24 23 3 27 27 H 1.09005 * 109.47091 * 60.00166 * 1 2 3 28 28 H 1.08995 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47353 * 300.00002 * 1 2 3 30 30 H 1.08000 * 119.88891 * 0.03817 * 4 3 2 31 31 H 0.96703 * 113.99858 * 270.02677 * 6 5 4 32 32 H 1.08995 * 109.47349 * 82.88556 * 8 7 5 33 33 H 1.09004 * 109.47011 * 202.88347 * 8 7 5 34 34 H 1.08998 * 109.47522 * 322.88145 * 8 7 5 35 35 H 0.97002 * 120.00038 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.47238 * 187.24628 * 21 11 10 37 37 H 1.08994 * 109.47276 * 307.24422 * 21 11 10 38 38 H 1.09007 * 109.47194 * 94.96664 * 25 24 23 39 39 H 1.08993 * 109.47155 * 214.96464 * 25 24 23 40 40 H 1.08998 * 109.47527 * 334.96881 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2941 2.3690 0.0005 5 6 1.9224 3.6079 0.0000 6 8 1.1770 4.7416 0.0000 7 6 3.3094 3.6939 -0.0016 8 6 3.9782 5.0443 -0.0091 9 6 4.0772 2.5451 -0.0022 10 8 5.4307 2.6314 -0.0043 11 6 6.1027 2.3157 1.2166 12 1 5.5872 1.4937 1.7132 13 6 7.5231 1.9106 0.9180 14 1 7.8772 1.8954 -0.1023 15 6 8.3708 1.5595 1.9471 16 7 7.9399 1.5786 3.1896 17 14 10.1318 1.0581 1.5769 18 1 11.0039 2.2597 1.6001 19 1 10.5966 0.0892 2.6020 20 1 10.1948 0.4265 0.2344 21 6 6.1037 3.5430 2.1302 22 17 4.4175 3.8996 2.6597 23 6 3.4499 1.2848 -0.0005 24 6 4.2528 0.0637 -0.0003 25 6 4.7873 -0.4870 -1.2972 26 8 4.4892 -0.5069 1.0446 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2155 2.3125 0.0016 31 1 0.9603 5.0698 -0.8834 32 1 4.0263 5.4315 1.0086 33 1 4.9876 4.9476 -0.4091 34 1 3.4046 5.7304 -0.6322 35 1 8.5362 1.3312 3.9136 36 1 6.7247 3.3450 3.0040 37 1 6.5030 4.3997 1.5874 38 1 5.8046 -0.1278 -1.4527 39 1 4.7889 -1.5762 -1.2562 40 1 4.1550 -0.1554 -2.1208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234791734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:25 Heat of formation + Delta-G solvation = -160.161847 kcal Electronic energy + Delta-G solvation = -27468.457050 eV Core-core repulsion = 23467.692923 eV Total energy + Delta-G solvation = -4000.764127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92877 -40.08724 -39.85865 -39.07092 -36.80385 -36.28696 -35.16693 -33.10814 -31.97928 -31.13154 -29.91619 -28.51284 -27.28110 -26.81239 -24.77402 -23.31142 -22.28136 -20.80822 -19.97294 -18.82021 -18.33814 -18.12072 -17.62831 -17.17649 -16.86815 -16.65248 -16.03945 -15.83039 -15.71205 -15.41375 -15.32176 -15.08401 -14.61593 -14.34719 -14.03313 -13.79346 -13.65081 -13.36728 -13.19901 -13.06587 -12.94309 -12.86956 -12.85169 -12.69104 -12.42045 -12.26908 -11.89775 -11.71059 -11.55180 -11.31617 -10.98500 -10.82959 -10.61586 -10.49303 -9.53118 -8.98516 -8.34429 -6.51236 -0.09392 0.25743 0.95894 1.40179 1.41282 1.53676 1.61636 2.05254 2.28685 2.37831 2.96732 3.00974 3.16616 3.35622 3.93867 4.00564 4.13503 4.18387 4.31002 4.36777 4.37338 4.38253 4.46841 4.59343 4.60631 4.70417 4.75199 4.84698 4.94476 4.96499 5.07947 5.16249 5.22152 5.28055 5.46606 5.50739 5.60529 5.86276 6.25106 6.49016 6.52879 6.80737 6.85877 7.21300 8.72366 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.005668 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.357600 B = 4938.993402 C = 6118.973336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.175 3.825 4 C -0.242 4.242 5 C 0.177 3.823 6 O -0.490 6.490 7 C -0.155 4.155 8 C -0.100 4.100 9 C 0.181 3.819 10 O -0.338 6.338 11 C 0.229 3.771 12 H 0.010 0.990 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.022 3.978 16 N -0.912 5.912 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.031 4.031 22 Cl -0.219 7.219 23 C -0.255 4.255 24 C 0.417 3.583 25 C -0.184 4.184 26 O -0.492 6.492 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.170 0.830 31 H 0.415 0.585 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.273 0.727 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 3.094 -10.620 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.128 3.872 4 C -0.261 4.261 5 C 0.131 3.869 6 O -0.304 6.304 7 C -0.156 4.156 8 C -0.156 4.156 9 C 0.136 3.864 10 O -0.256 6.256 11 C 0.174 3.826 12 H 0.028 0.972 13 C -0.577 4.577 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.801 3.199 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.094 4.094 22 Cl -0.193 7.193 23 C -0.257 4.257 24 C 0.295 3.705 25 C -0.241 4.241 26 O -0.368 6.368 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.081 0.919 30 H 0.187 0.813 31 H 0.276 0.724 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.572 2.597 -9.393 16.708 hybrid contribution 0.592 -0.205 0.081 0.632 sum -12.980 2.392 -9.312 16.153 Atomic orbital electron populations 1.23472 0.75385 1.05994 1.02887 1.86011 1.24440 1.26121 1.88054 1.18339 0.89124 0.85413 0.94327 1.21430 1.01721 0.90302 1.12608 1.17762 0.87511 0.85965 0.95634 1.84697 1.71050 1.39188 1.35449 1.20176 0.93258 0.95856 1.06296 1.20691 1.00009 0.91896 1.03033 1.18225 0.84141 0.89866 0.94211 1.85886 1.14118 1.88728 1.36837 1.20194 0.92064 0.91168 0.79142 0.97220 1.21178 0.94567 1.47135 0.94849 0.90869 1.25808 1.03601 0.94188 0.94328 1.69949 1.37907 1.47225 0.99905 0.85249 0.77828 0.78520 0.78347 1.18861 1.20767 1.18806 1.25485 0.80952 1.00358 1.02635 1.98628 1.32124 1.95789 1.92733 1.20243 0.93052 0.95779 1.16675 1.22555 0.74421 0.82275 0.91258 1.22174 1.03650 1.03152 0.95111 1.90571 1.50188 1.58934 1.37075 0.90044 0.86049 0.91928 0.81294 0.72436 0.91228 0.92470 0.89545 0.91796 0.87292 0.89755 0.88398 0.88501 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -9.96 9.95 -89.30 -0.89 -10.85 16 3 C 0.17 5.81 6.70 22.88 0.15 5.96 16 4 C -0.24 -6.57 8.95 22.43 0.20 -6.37 16 5 C 0.18 5.04 6.67 22.61 0.15 5.20 16 6 O -0.49 -10.65 12.63 -89.87 -1.14 -11.78 16 7 C -0.15 -5.32 4.23 -19.71 -0.08 -5.41 16 8 C -0.10 -3.14 8.72 71.23 0.62 -2.51 16 9 C 0.18 7.42 4.67 22.88 0.11 7.53 16 10 O -0.34 -15.77 8.23 -89.33 -0.74 -16.51 16 11 C 0.23 11.92 2.01 29.85 0.06 11.98 16 12 H 0.01 0.61 6.10 -2.39 -0.01 0.59 16 13 C -0.54 -29.38 8.89 25.60 0.23 -29.15 16 14 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 15 C 0.02 1.15 5.28 84.65 0.45 1.60 16 16 N -0.91 -51.52 11.29 21.45 0.24 -51.28 16 17 Si 0.98 42.20 29.54 68.60 2.03 44.22 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 C -0.03 -1.52 6.09 71.98 0.44 -1.08 16 22 Cl -0.22 -9.57 22.95 -2.72 -0.06 -9.64 16 23 C -0.26 -10.29 5.38 -19.99 -0.11 -10.40 16 24 C 0.42 18.03 4.83 27.74 0.13 18.16 16 25 C -0.18 -6.09 10.25 71.23 0.73 -5.36 16 26 O -0.49 -25.74 16.79 -3.33 -0.06 -25.79 16 27 H 0.08 1.00 7.66 -2.38 -0.02 0.98 16 28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.02 7.65 -2.39 -0.02 1.00 16 30 H 0.17 3.29 6.27 -2.91 -0.02 3.27 16 31 H 0.41 4.20 9.06 -74.06 -0.67 3.53 16 32 H 0.07 2.36 5.85 -2.39 -0.01 2.34 16 33 H 0.06 1.94 7.30 -2.38 -0.02 1.92 16 34 H 0.09 2.05 7.75 -2.39 -0.02 2.04 16 35 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.11 5.80 5.91 -2.38 -0.01 5.79 16 37 H 0.08 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 39 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.10 2.79 8.08 -2.39 -0.02 2.77 16 Total: -1.00 -72.50 345.52 4.01 -68.49 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.43 Total: 21.60 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 4.19 Total: -8.47 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.24 Total: -51.28 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -2.81 Total: -64.93 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -9.57 SS G_CDS: -0.06 Total: -9.64 kcal Total: -72.50 4.01 -68.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234791734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.668 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds