Wall clock time and date at job start Tue Mar 31 2020 14:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.46976 * 239.99896 * 3 2 1 5 5 H 1.48500 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46901 * 119.99745 * 3 2 1 7 7 C 1.38666 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 180.02562 * 7 2 1 9 9 O 1.34801 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.35625 * 117.00036 * 185.06319 * 9 7 2 11 11 C 1.38703 * 120.12996 * 354.40168 * 10 9 7 12 12 C 1.38334 * 120.03429 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.84990 * 180.02562 * 12 11 10 14 14 C 1.38735 * 120.29843 * 0.02562 * 12 11 10 15 15 C 1.37896 * 120.25950 * 0.29507 * 14 12 11 16 16 C 1.39441 * 119.95972 * 359.42925 * 15 14 12 17 17 C 1.48052 * 120.14489 * 180.29873 * 16 15 14 18 18 C 1.39670 * 119.95433 * 129.97400 * 17 16 15 19 19 C 1.36564 * 120.04437 * 179.72006 * 18 17 16 20 20 C 1.40047 * 119.95566 * 0.53045 * 19 18 17 21 21 C 1.46937 * 120.04818 * 179.71846 * 20 19 18 22 22 C 1.35108 * 119.99743 * 0.02591 * 21 20 19 23 23 C 1.41842 * 120.00063 * 179.97438 * 22 21 20 24 24 O 1.21638 * 119.99527 * 0.02562 * 23 22 21 25 25 O 1.34922 * 120.00102 * 180.02562 * 23 22 21 26 26 C 1.40051 * 119.90773 * 359.74506 * 20 19 18 27 27 C 1.36566 * 119.95247 * 359.97438 * 26 20 19 28 28 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.98445 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.86790 * 180.02562 * 14 12 11 31 31 H 1.08007 * 120.01567 * 179.70066 * 15 14 12 32 32 H 1.07999 * 119.97631 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.01947 * 180.25723 * 19 18 17 34 34 H 1.07991 * 120.00095 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.00221 * 0.02562 * 22 21 20 36 36 H 0.96696 * 114.00234 * 180.02562 * 25 23 22 37 37 H 1.08003 * 120.02289 * 180.02562 * 26 20 19 38 38 H 1.08003 * 119.97402 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0693 -3.5033 0.1077 11 6 3.4549 -3.4399 0.0943 12 6 4.2021 -4.5988 0.2043 13 9 5.5515 -4.5327 0.1912 14 6 3.5722 -5.8287 0.3279 15 6 2.1955 -5.9066 0.3360 16 6 1.4316 -4.7447 0.2316 17 6 -0.0467 -4.8230 0.2466 18 6 -0.7800 -4.0008 1.1051 19 6 -2.1439 -4.0674 1.1163 20 6 -2.8070 -4.9688 0.2742 21 6 -4.2742 -5.0465 0.2891 22 6 -4.9847 -4.2476 1.1152 23 6 -6.4010 -4.3222 1.1292 24 8 -6.9760 -5.1058 0.3977 25 8 -7.1105 -3.5241 1.9538 26 6 -2.0696 -5.7964 -0.5818 27 6 -0.7060 -5.7226 -0.5941 28 1 -0.4850 0.8400 -0.0004 29 1 3.9506 -2.4851 -0.0013 30 1 4.1625 -6.7291 0.4137 31 1 1.7092 -6.8667 0.4276 32 1 -0.2681 -3.3090 1.7576 33 1 -2.7107 -3.4285 1.7774 34 1 -4.7847 -5.7421 -0.3603 35 1 -4.4742 -3.5516 1.7644 36 1 -8.0677 -3.6471 1.8929 37 1 -2.5791 -6.4919 -1.2323 38 1 -0.1370 -6.3604 -1.2543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235458246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:16 Heat of formation + Delta-G solvation = -99.989912 kcal Electronic energy + Delta-G solvation = -25935.097914 eV Core-core repulsion = 21815.915583 eV Total energy + Delta-G solvation = -4119.182332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.41421 -40.30528 -39.67324 -38.52605 -36.52685 -36.17370 -34.20516 -32.52759 -31.24744 -30.79422 -29.46168 -28.12546 -25.63992 -24.87369 -22.82039 -22.24652 -21.72759 -20.78838 -19.23395 -18.42346 -18.31824 -17.64564 -16.97885 -16.33291 -15.60915 -15.58732 -15.35808 -15.14701 -15.06183 -14.63914 -14.36412 -14.09197 -13.75754 -13.53258 -13.45451 -13.34081 -13.01813 -12.81377 -12.42331 -12.30730 -11.92008 -11.72122 -11.65559 -11.36827 -10.98178 -10.95034 -10.81724 -10.69588 -10.61790 -10.51786 -10.18420 -9.74288 -9.04290 -8.68239 -8.49063 -7.94155 -7.30705 -6.66465 -4.25396 0.38063 1.54815 1.84169 2.01986 2.16306 3.03169 3.03637 3.06796 3.10559 3.30595 3.79260 4.06141 4.30820 4.72601 4.85719 4.88647 4.92162 5.02345 5.11108 5.21011 5.30596 5.42824 5.46110 5.61117 5.69729 5.74697 5.95608 6.08027 6.16159 6.25559 6.31278 6.34671 6.38647 6.49866 6.70125 6.74196 6.81405 6.83749 6.89029 7.02622 7.16380 7.30232 7.49913 7.75861 7.83586 8.77349 9.39350 10.48703 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.003566 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.136179 B = 7850.368536 C =10339.739443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.400 4.400 8 H 0.094 0.906 9 O -0.150 6.150 10 C 0.187 3.813 11 C -0.271 4.271 12 C 0.148 3.852 13 F -0.150 7.150 14 C -0.250 4.250 15 C -0.029 4.029 16 C -0.154 4.154 17 C 0.020 3.980 18 C -0.087 4.087 19 C -0.079 4.079 20 C -0.116 4.116 21 C 0.037 3.963 22 C -0.242 4.242 23 C 0.519 3.481 24 O -0.535 6.535 25 O -0.508 6.508 26 C -0.086 4.086 27 C -0.127 4.127 28 H 0.274 0.726 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.405 0.595 37 H 0.123 0.877 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -8.334 2.223 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.160 4.160 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.112 0.888 9 O -0.051 6.051 10 C 0.130 3.870 11 C -0.291 4.291 12 C 0.129 3.871 13 F -0.129 7.129 14 C -0.270 4.270 15 C -0.047 4.047 16 C -0.155 4.155 17 C 0.020 3.980 18 C -0.105 4.105 19 C -0.097 4.097 20 C -0.116 4.116 21 C 0.018 3.982 22 C -0.261 4.261 23 C 0.367 3.633 24 O -0.428 6.428 25 O -0.317 6.317 26 C -0.104 4.104 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.261 0.739 37 H 0.141 0.859 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.734 -8.202 2.050 9.690 hybrid contribution 0.276 0.962 -0.113 1.007 sum -4.458 -7.240 1.936 8.720 Atomic orbital electron populations 1.70011 1.05927 1.28318 1.43619 1.25305 0.95875 0.98885 0.95887 0.85773 0.78843 0.79450 0.79453 1.19313 1.20063 1.19269 1.21370 0.91994 0.80560 1.53606 0.88825 1.83982 1.33950 1.11295 1.75842 1.18958 0.88949 0.87621 0.91479 1.20999 0.94099 0.98401 1.15576 1.17564 0.75874 0.94391 0.99298 1.91427 1.30235 1.97376 1.93844 1.20461 0.94975 0.95814 1.15723 1.20555 0.92264 0.96413 0.95486 1.17898 0.91493 0.91047 1.15075 1.18835 0.91828 0.93823 0.93533 1.20998 0.93441 0.97636 0.98468 1.21082 0.94656 0.96374 0.97547 1.18869 0.91516 1.00415 1.00788 1.22590 0.92590 0.91913 0.91067 1.21199 0.90484 1.07086 1.07294 1.19733 0.89715 0.77133 0.76675 1.90916 1.73044 1.37978 1.40854 1.85102 1.25080 1.60767 1.60799 1.20907 0.93993 0.98035 0.97486 1.20879 0.94062 0.99945 0.99626 0.91564 0.84092 0.86043 0.85646 0.85082 0.85624 0.84772 0.84112 0.73894 0.85884 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.67 13.67 55.48 0.76 -21.92 16 2 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 19.20 29.55 -169.99 -5.02 14.18 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.40 -10.23 9.49 30.89 0.29 -9.94 16 8 H 0.09 2.24 5.21 -52.48 -0.27 1.97 16 9 O -0.15 -3.81 8.11 0.51 0.00 -3.80 16 10 C 0.19 4.10 6.56 -38.71 -0.25 3.84 16 11 C -0.27 -5.60 9.13 -39.37 -0.36 -5.96 16 12 C 0.15 2.74 7.30 -39.36 -0.29 2.46 16 13 F -0.15 -2.69 17.26 2.25 0.04 -2.66 16 14 C -0.25 -4.08 10.01 -39.52 -0.40 -4.47 16 15 C -0.03 -0.46 9.49 -39.26 -0.37 -0.84 16 16 C -0.15 -2.90 5.48 -104.72 -0.57 -3.48 16 17 C 0.02 0.36 5.28 -104.80 -0.55 -0.20 16 18 C -0.09 -1.61 8.72 -39.65 -0.35 -1.95 16 19 C -0.08 -1.26 9.35 -39.51 -0.37 -1.63 16 20 C -0.12 -1.67 5.87 -105.02 -0.62 -2.29 16 21 C 0.04 0.48 9.41 -37.17 -0.35 0.13 16 22 C -0.24 -3.10 9.33 -39.32 -0.37 -3.46 16 23 C 0.52 6.69 8.05 32.11 0.26 6.95 16 24 O -0.53 -8.10 16.84 -19.37 -0.33 -8.42 16 25 O -0.51 -5.28 13.54 -41.10 -0.56 -5.84 16 26 C -0.09 -1.18 9.74 -39.51 -0.38 -1.57 16 27 C -0.13 -1.92 9.43 -39.65 -0.37 -2.29 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.14 2.94 5.64 -52.48 -0.30 2.65 16 30 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.13 1.61 8.03 -52.48 -0.42 1.19 16 32 H 0.13 2.63 7.69 -52.49 -0.40 2.23 16 33 H 0.13 1.81 6.15 -52.49 -0.32 1.48 16 34 H 0.13 1.58 7.45 -52.49 -0.39 1.19 16 35 H 0.14 1.71 6.06 -52.49 -0.32 1.40 16 36 H 0.40 2.35 8.98 45.56 0.41 2.76 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 38 H 0.12 1.61 8.03 -52.48 -0.42 1.19 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -29.74 346.11 -7.46 -37.19 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -2.42 Total: 9.66 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -5.15 Total: -23.61 kcal Atomic # 7 Polarization: -22.67 SS G_CDS: 0.76 Total: -21.92 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.88 Total: -18.07 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.74 -7.46 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235458246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.796 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds