Wall clock time and date at job start Tue Mar 31 2020 14:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.46976 * 239.99896 * 3 2 1 5 5 H 1.48500 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46901 * 119.99745 * 3 2 1 7 7 C 1.38666 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 180.02562 * 7 2 1 9 9 O 1.34801 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.35625 * 117.00036 * 185.06319 * 9 7 2 11 11 C 1.38703 * 120.12996 * 354.40168 * 10 9 7 12 12 C 1.38334 * 120.03429 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.84990 * 180.02562 * 12 11 10 14 14 C 1.38735 * 120.29843 * 0.02562 * 12 11 10 15 15 C 1.37896 * 120.25950 * 0.29507 * 14 12 11 16 16 C 1.39441 * 119.95972 * 359.42925 * 15 14 12 17 17 C 1.48052 * 120.14489 * 180.29873 * 16 15 14 18 18 C 1.39670 * 119.95433 * 129.97400 * 17 16 15 19 19 C 1.36564 * 120.04437 * 179.72006 * 18 17 16 20 20 C 1.40047 * 119.95566 * 0.53045 * 19 18 17 21 21 C 1.46937 * 120.04818 * 179.71846 * 20 19 18 22 22 C 1.35108 * 119.99743 * 0.02591 * 21 20 19 23 23 C 1.41842 * 120.00063 * 179.97438 * 22 21 20 24 24 O 1.21638 * 119.99527 * 0.02562 * 23 22 21 25 25 O 1.34922 * 120.00102 * 180.02562 * 23 22 21 26 26 C 1.40051 * 119.90773 * 359.74506 * 20 19 18 27 27 C 1.36566 * 119.95247 * 359.97438 * 26 20 19 28 28 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.98445 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.86790 * 180.02562 * 14 12 11 31 31 H 1.08007 * 120.01567 * 179.70066 * 15 14 12 32 32 H 1.07999 * 119.97631 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.01947 * 180.25723 * 19 18 17 34 34 H 1.07991 * 120.00095 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.00221 * 0.02562 * 22 21 20 36 36 H 0.96696 * 114.00234 * 180.02562 * 25 23 22 37 37 H 1.08003 * 120.02289 * 180.02562 * 26 20 19 38 38 H 1.08003 * 119.97402 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0693 -3.5033 0.1077 11 6 3.4549 -3.4399 0.0943 12 6 4.2021 -4.5988 0.2043 13 9 5.5515 -4.5327 0.1912 14 6 3.5722 -5.8287 0.3279 15 6 2.1955 -5.9066 0.3360 16 6 1.4316 -4.7447 0.2316 17 6 -0.0467 -4.8230 0.2466 18 6 -0.7800 -4.0008 1.1051 19 6 -2.1439 -4.0674 1.1163 20 6 -2.8070 -4.9688 0.2742 21 6 -4.2742 -5.0465 0.2891 22 6 -4.9847 -4.2476 1.1152 23 6 -6.4010 -4.3222 1.1292 24 8 -6.9760 -5.1058 0.3977 25 8 -7.1105 -3.5241 1.9538 26 6 -2.0696 -5.7964 -0.5818 27 6 -0.7060 -5.7226 -0.5941 28 1 -0.4850 0.8400 -0.0004 29 1 3.9506 -2.4851 -0.0013 30 1 4.1625 -6.7291 0.4137 31 1 1.7092 -6.8667 0.4276 32 1 -0.2681 -3.3090 1.7576 33 1 -2.7107 -3.4285 1.7774 34 1 -4.7847 -5.7421 -0.3603 35 1 -4.4742 -3.5516 1.7644 36 1 -8.0677 -3.6471 1.8929 37 1 -2.5791 -6.4919 -1.2323 38 1 -0.1370 -6.3604 -1.2543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235458246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:15 Heat of formation + Delta-G solvation = -115.911889 kcal Electronic energy + Delta-G solvation = -25935.788343 eV Core-core repulsion = 21815.915583 eV Total energy + Delta-G solvation = -4119.872760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.88064 -41.34358 -41.10194 -39.87814 -38.06212 -37.14516 -35.36288 -34.34454 -32.52775 -32.05171 -30.95793 -29.44963 -27.43095 -26.04882 -24.13050 -23.56644 -23.14754 -22.09544 -20.31186 -20.09297 -19.34343 -19.23385 -18.08253 -17.57245 -17.14854 -16.94508 -16.62500 -16.59702 -16.28918 -15.99422 -15.87520 -15.47262 -15.32197 -15.02593 -14.72177 -14.52211 -14.25078 -14.18375 -13.78371 -13.63418 -13.43642 -12.99034 -12.91996 -12.60645 -12.45697 -12.40607 -12.21122 -12.15877 -11.82741 -11.70146 -11.47629 -11.33530 -10.83640 -9.90829 -9.87124 -9.38369 -8.74500 -8.50737 -6.18307 -0.74619 0.16140 0.52741 0.61336 0.92833 1.34246 1.42584 1.48150 2.05260 2.13002 2.41461 2.61888 2.94844 3.09097 3.22683 3.45846 3.73774 3.79478 3.90586 3.98853 4.06513 4.19020 4.26196 4.40332 4.44356 4.53494 4.60604 4.81866 4.90183 5.01711 5.04937 5.10758 5.18479 5.24457 5.26415 5.38433 5.45726 5.53643 5.54014 5.65935 5.77157 5.93419 6.02544 6.07082 6.92552 6.95350 7.65447 8.68433 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.003566 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.136179 B = 7850.368536 C =10339.739443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.007 2.993 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.097 0.903 9 O -0.192 6.192 10 C 0.157 3.843 11 C -0.287 4.287 12 C 0.137 3.863 13 F -0.147 7.147 14 C -0.221 4.221 15 C -0.019 4.019 16 C -0.151 4.151 17 C -0.009 4.009 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.109 4.109 21 C 0.039 3.961 22 C -0.243 4.243 23 C 0.524 3.476 24 O -0.558 6.558 25 O -0.505 6.505 26 C -0.079 4.079 27 C -0.121 4.121 28 H 0.274 0.726 29 H 0.126 0.874 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.426 0.574 37 H 0.164 0.836 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -11.235 1.693 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.206 4.206 3 Si 0.827 3.173 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.114 0.886 9 O -0.096 6.096 10 C 0.104 3.896 11 C -0.308 4.308 12 C 0.118 3.882 13 F -0.125 7.125 14 C -0.240 4.240 15 C -0.037 4.037 16 C -0.152 4.152 17 C -0.009 4.009 18 C -0.128 4.128 19 C -0.110 4.110 20 C -0.109 4.109 21 C 0.020 3.980 22 C -0.261 4.261 23 C 0.374 3.626 24 O -0.453 6.453 25 O -0.316 6.316 26 C -0.097 4.097 27 C -0.139 4.139 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.180 0.820 31 H 0.189 0.811 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.285 0.715 37 H 0.182 0.818 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.970 -11.142 1.537 12.297 hybrid contribution 0.335 1.546 0.124 1.587 sum -4.635 -9.596 1.661 10.786 Atomic orbital electron populations 1.70140 1.07537 1.28918 1.46764 1.26353 0.96727 1.02063 0.95448 0.84800 0.77632 0.75074 0.79758 1.18548 1.19451 1.18475 1.21717 0.92377 0.81519 1.54226 0.88610 1.83978 1.34707 1.11880 1.79056 1.19519 0.89666 0.88101 0.92300 1.21035 0.94107 0.99026 1.16599 1.17692 0.76042 0.94601 0.99873 1.91435 1.29851 1.97390 1.93845 1.20982 0.95407 0.96041 1.11570 1.21063 0.92081 0.97098 0.93443 1.18341 0.92732 0.90802 1.13363 1.18942 0.91401 0.95442 0.95073 1.20829 0.94555 0.98032 0.99401 1.21195 0.93892 0.97339 0.98547 1.19073 0.92500 0.99479 0.99873 1.22626 0.91519 0.92376 0.91445 1.21350 0.90867 1.06837 1.07070 1.19655 0.89701 0.76838 0.76422 1.90908 1.73483 1.39027 1.41888 1.85065 1.26913 1.59853 1.59810 1.21357 0.93566 0.97775 0.96969 1.21157 0.94897 0.99060 0.98759 0.91691 0.85582 0.81967 0.81138 0.88686 0.85064 0.82998 0.84016 0.71475 0.81812 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.40 13.67 21.61 0.30 -51.10 16 2 C -0.01 -0.28 5.49 84.84 0.47 0.18 16 3 Si 1.01 41.22 29.55 68.60 2.03 43.25 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.42 -23.22 9.49 67.92 0.64 -22.57 16 8 H 0.10 4.95 5.21 -2.91 -0.02 4.94 16 9 O -0.19 -10.51 8.11 -21.07 -0.17 -10.68 16 10 C 0.16 7.23 6.56 22.84 0.15 7.38 16 11 C -0.29 -12.31 9.13 22.40 0.20 -12.11 16 12 C 0.14 4.92 7.30 22.41 0.16 5.08 16 13 F -0.15 -5.06 17.26 44.97 0.78 -4.28 16 14 C -0.22 -6.39 10.01 22.31 0.22 -6.16 16 15 C -0.02 -0.55 9.49 22.48 0.21 -0.33 16 16 C -0.15 -5.67 5.48 -19.93 -0.11 -5.78 16 17 C -0.01 -0.30 5.28 -19.98 -0.11 -0.41 16 18 C -0.11 -4.27 8.72 22.22 0.19 -4.08 16 19 C -0.09 -3.03 9.35 22.32 0.21 -2.82 16 20 C -0.11 -2.99 5.87 -20.12 -0.12 -3.11 16 21 C 0.04 0.92 9.41 23.83 0.22 1.14 16 22 C -0.24 -5.89 9.33 22.44 0.21 -5.68 16 23 C 0.52 12.64 8.05 68.71 0.55 13.19 16 24 O -0.56 -15.85 16.84 19.38 0.33 -15.53 16 25 O -0.50 -9.59 13.54 -58.37 -0.79 -10.38 16 26 C -0.08 -1.91 9.74 22.32 0.22 -1.70 16 27 C -0.12 -3.33 9.43 22.22 0.21 -3.12 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.13 5.64 5.64 -2.91 -0.02 5.62 16 30 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.17 3.41 8.03 -2.91 -0.02 3.39 16 32 H 0.09 4.27 7.69 -2.91 -0.02 4.25 16 33 H 0.13 3.98 6.15 -2.91 -0.02 3.97 16 34 H 0.15 3.10 7.45 -2.92 -0.02 3.08 16 35 H 0.14 3.39 6.06 -2.91 -0.02 3.37 16 36 H 0.43 4.04 8.98 -74.06 -0.67 3.38 16 37 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 38 H 0.15 3.28 8.03 -2.91 -0.02 3.25 16 Total: -1.00 -69.89 346.11 6.49 -63.40 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.48 Total: 26.22 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.55 Total: -40.90 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.30 Total: -51.10 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.63 Total: -36.59 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.78 Total: -4.28 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -69.89 6.49 -63.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235458246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.513 kcal (2) G-P(sol) polarization free energy of solvation -69.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds