Wall clock time and date at job start Tue Mar 31 2020 14:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 120.00630 * 2 1 4 4 H 1.48508 * 109.47158 * 240.00544 * 3 2 1 5 5 H 1.48504 * 109.46781 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47508 * 120.00027 * 3 2 1 7 7 C 1.38654 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00161 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.35666 * 116.99700 * 185.06799 * 9 7 2 11 11 C 1.38698 * 120.12422 * 354.40390 * 10 9 7 12 12 C 1.38333 * 120.02836 * 180.02562 * 11 10 9 13 13 F 1.35096 * 119.86909 * 179.97438 * 12 11 10 14 14 C 1.38685 * 120.27093 * 359.70315 * 12 11 10 15 15 C 1.37974 * 120.24014 * 0.55070 * 14 12 11 16 16 C 1.39300 * 119.96764 * 359.47330 * 15 14 12 17 17 C 1.48293 * 120.12803 * 180.23114 * 16 15 14 18 18 C 1.39559 * 120.04106 * 130.00195 * 17 16 15 19 19 C 1.38148 * 120.22359 * 179.97438 * 18 17 16 20 20 C 1.38000 * 120.30916 * 0.02780 * 19 18 17 21 21 C 1.39901 * 120.07877 * 359.97236 * 20 19 18 22 22 C 1.47190 * 120.10783 * 180.02562 * 21 20 19 23 23 C 1.34908 * 120.00380 * 359.97438 * 22 21 20 24 24 C 1.46238 * 120.00235 * 180.02562 * 23 22 21 25 25 O 1.21617 * 120.00095 * 359.97438 * 24 23 22 26 26 O 1.34908 * 119.99912 * 179.97438 * 24 23 22 27 27 C 1.39059 * 120.04659 * 309.71904 * 17 16 15 28 28 H 0.97002 * 119.99190 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.98659 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.88130 * 180.29689 * 14 12 11 31 31 H 1.07992 * 120.01854 * 179.75309 * 15 14 12 32 32 H 1.08002 * 119.89107 * 359.95438 * 18 17 16 33 33 H 1.07994 * 119.84437 * 179.97438 * 19 18 17 34 34 H 1.07995 * 119.96164 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00168 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.99452 * 359.97438 * 23 22 21 37 37 H 0.96698 * 114.00253 * 179.97438 * 26 24 23 38 38 H 1.08000 * 120.15275 * 0.03338 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6962 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6962 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3683 -0.0005 10 6 2.0694 -3.5038 0.1057 11 6 3.4548 -3.4402 0.0913 12 6 4.2021 -4.5993 0.1993 13 9 5.5514 -4.5338 0.1844 14 6 3.5719 -5.8280 0.3283 15 6 2.1943 -5.9046 0.3387 16 6 1.4320 -4.7438 0.2302 17 6 -0.0488 -4.8216 0.2461 18 6 -0.7826 -3.9968 1.0999 19 6 -2.1623 -4.0658 1.1174 20 6 -2.8259 -4.9504 0.2919 21 6 -2.1030 -5.7831 -0.5691 22 6 -2.8102 -6.7264 -1.4503 23 6 -4.1576 -6.7895 -1.4282 24 6 -4.8602 -7.7271 -2.3033 25 8 -4.2298 -8.4498 -3.0513 26 8 -6.2076 -7.7905 -2.2808 27 6 -0.7083 -5.7121 -0.5939 28 1 -0.4849 0.8401 0.0004 29 1 3.9504 -2.4855 -0.0042 30 1 4.1615 -6.7284 0.4170 31 1 1.7073 -6.8636 0.4354 32 1 -0.2702 -3.3026 1.7494 33 1 -2.7240 -3.4250 1.7809 34 1 -3.9046 -4.9999 0.3105 35 1 -2.2504 -7.3682 -2.1145 36 1 -4.7174 -6.1480 -0.7636 37 1 -6.5811 -8.4388 -2.8934 38 1 -0.1445 -6.3493 -1.2591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240548211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:38 Heat of formation + Delta-G solvation = -102.131838 kcal Electronic energy + Delta-G solvation = -25898.555354 eV Core-core repulsion = 21779.280141 eV Total energy + Delta-G solvation = -4119.275213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.39291 -40.23483 -39.63193 -38.46435 -36.48511 -36.23636 -34.18172 -32.50272 -31.74931 -30.01547 -29.48424 -27.95925 -25.61321 -24.93519 -23.13559 -22.17723 -21.42247 -21.05802 -19.09343 -18.39795 -18.36000 -17.48977 -17.04000 -16.32746 -15.64571 -15.57605 -15.43259 -15.26407 -15.11114 -14.60259 -14.35172 -14.15990 -13.76514 -13.54826 -13.37472 -13.26405 -13.14378 -12.80340 -12.42839 -12.22801 -11.86505 -11.74855 -11.68399 -11.36319 -11.02834 -10.88689 -10.80308 -10.74544 -10.62074 -10.57698 -10.25197 -9.72225 -9.02878 -8.78912 -8.21619 -7.98431 -7.35052 -6.64851 -4.23923 0.48325 1.38059 1.94780 2.03939 2.12259 2.99047 3.03975 3.04414 3.07248 3.08332 3.80602 4.06297 4.31023 4.75017 4.79512 4.83818 4.91269 5.03238 5.11875 5.20523 5.30187 5.39720 5.48590 5.63588 5.66564 5.75798 5.91387 6.04528 6.11842 6.22398 6.25339 6.32314 6.35078 6.53378 6.71958 6.75875 6.80447 6.85010 6.89857 7.03267 7.18287 7.30139 7.52313 7.73735 7.77881 8.79372 9.41734 10.50593 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.003323 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.283854 B = 8424.737830 C =10397.287884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.094 0.906 9 O -0.152 6.152 10 C 0.186 3.814 11 C -0.270 4.270 12 C 0.146 3.854 13 F -0.150 7.150 14 C -0.249 4.249 15 C -0.032 4.032 16 C -0.146 4.146 17 C -0.016 4.016 18 C -0.053 4.053 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.104 4.104 22 C 0.026 3.974 23 C -0.228 4.228 24 C 0.513 3.487 25 O -0.528 6.528 26 O -0.507 6.507 27 C -0.081 4.081 28 H 0.274 0.726 29 H 0.141 0.859 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.406 0.594 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -10.063 0.721 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.160 4.160 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.111 0.889 9 O -0.053 6.053 10 C 0.129 3.871 11 C -0.291 4.291 12 C 0.127 3.873 13 F -0.129 7.129 14 C -0.268 4.268 15 C -0.051 4.051 16 C -0.147 4.147 17 C -0.016 4.016 18 C -0.071 4.071 19 C -0.139 4.139 20 C -0.118 4.118 21 C -0.104 4.104 22 C 0.008 3.992 23 C -0.247 4.247 24 C 0.360 3.640 25 O -0.419 6.419 26 O -0.317 6.317 27 C -0.100 4.100 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.263 0.737 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.772 -9.696 0.780 11.311 hybrid contribution 0.579 0.590 -0.492 0.962 sum -5.193 -9.107 0.288 10.487 Atomic orbital electron populations 1.70021 1.05906 1.28211 1.43990 1.25293 0.95876 0.98856 0.95946 0.85778 0.78833 0.79493 0.79434 1.19327 1.20093 1.19313 1.21356 0.91972 0.80592 1.53564 0.88874 1.83994 1.33882 1.11261 1.76193 1.18946 0.88956 0.87670 0.91491 1.20993 0.94108 0.98372 1.15591 1.17541 0.75872 0.94397 0.99486 1.91422 1.30244 1.97377 1.93873 1.20467 0.94968 0.95837 1.15564 1.20541 0.92281 0.96460 0.95769 1.17832 0.91338 0.91024 1.14552 1.18482 0.91830 0.95719 0.95586 1.21516 0.93630 0.95483 0.96436 1.20991 0.94489 0.98615 0.99797 1.21325 0.99372 0.95468 0.95590 1.18685 0.93251 0.99096 0.99357 1.22545 0.93614 0.91463 0.91605 1.22016 0.94672 1.03500 1.04514 1.21042 0.80562 0.81469 0.80925 1.90927 1.67993 1.42896 1.40121 1.85065 1.22274 1.61276 1.63082 1.21390 0.92602 0.98236 0.97723 0.91646 0.84127 0.86073 0.85698 0.85190 0.85782 0.85948 0.84738 0.84142 0.73725 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.76 13.67 55.48 0.76 -22.00 16 2 C 0.05 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 19.28 29.55 -169.99 -5.02 14.25 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.40 -10.27 9.49 30.89 0.29 -9.98 16 8 H 0.09 2.25 5.21 -52.49 -0.27 1.97 16 9 O -0.15 -3.88 8.10 0.35 0.00 -3.88 16 10 C 0.19 4.11 6.55 -38.76 -0.25 3.85 16 11 C -0.27 -5.65 9.14 -39.38 -0.36 -6.01 16 12 C 0.15 2.75 7.29 -39.38 -0.29 2.46 16 13 F -0.15 -2.74 17.26 2.25 0.04 -2.70 16 14 C -0.25 -4.12 10.01 -39.51 -0.40 -4.52 16 15 C -0.03 -0.52 9.50 -39.28 -0.37 -0.90 16 16 C -0.15 -2.79 5.48 -104.71 -0.57 -3.36 16 17 C -0.02 -0.29 5.27 -104.96 -0.55 -0.84 16 18 C -0.05 -0.96 8.78 -39.12 -0.34 -1.31 16 19 C -0.12 -1.89 10.02 -39.70 -0.40 -2.29 16 20 C -0.10 -1.39 9.41 -39.05 -0.37 -1.75 16 21 C -0.10 -1.47 5.86 -105.10 -0.62 -2.09 16 22 C 0.03 0.32 9.46 -37.13 -0.35 -0.03 16 23 C -0.23 -2.61 9.53 -37.55 -0.36 -2.97 16 24 C 0.51 6.05 8.23 33.94 0.28 6.33 16 25 O -0.53 -7.66 16.96 -19.35 -0.33 -7.99 16 26 O -0.51 -4.60 13.56 -41.06 -0.56 -5.15 16 27 C -0.08 -1.26 9.26 -38.74 -0.36 -1.62 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 32 H 0.13 2.60 7.67 -52.49 -0.40 2.20 16 33 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.12 1.36 6.15 -52.49 -0.32 1.04 16 35 H 0.13 1.60 7.52 -52.49 -0.39 1.20 16 36 H 0.14 1.40 6.07 -52.49 -0.32 1.08 16 37 H 0.41 1.90 8.98 45.56 0.41 2.30 16 38 H 0.13 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -29.85 346.93 -7.42 -37.26 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -2.42 Total: 8.89 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -5.11 Total: -23.92 kcal Atomic # 7 Polarization: -22.76 SS G_CDS: 0.76 Total: -22.00 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.88 Total: -17.02 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.85 -7.42 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240548211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.869 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds