Wall clock time and date at job start Tue Mar 31 2020 14:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 120.00630 * 2 1 4 4 H 1.48508 * 109.47158 * 240.00544 * 3 2 1 5 5 H 1.48504 * 109.46781 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47508 * 120.00027 * 3 2 1 7 7 C 1.38654 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00161 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.35666 * 116.99700 * 185.06799 * 9 7 2 11 11 C 1.38698 * 120.12422 * 354.40390 * 10 9 7 12 12 C 1.38333 * 120.02836 * 180.02562 * 11 10 9 13 13 F 1.35096 * 119.86909 * 179.97438 * 12 11 10 14 14 C 1.38685 * 120.27093 * 359.70315 * 12 11 10 15 15 C 1.37974 * 120.24014 * 0.55070 * 14 12 11 16 16 C 1.39300 * 119.96764 * 359.47330 * 15 14 12 17 17 C 1.48293 * 120.12803 * 180.23114 * 16 15 14 18 18 C 1.39559 * 120.04106 * 130.00195 * 17 16 15 19 19 C 1.38148 * 120.22359 * 179.97438 * 18 17 16 20 20 C 1.38000 * 120.30916 * 0.02780 * 19 18 17 21 21 C 1.39901 * 120.07877 * 359.97236 * 20 19 18 22 22 C 1.47190 * 120.10783 * 180.02562 * 21 20 19 23 23 C 1.34908 * 120.00380 * 359.97438 * 22 21 20 24 24 C 1.46238 * 120.00235 * 180.02562 * 23 22 21 25 25 O 1.21617 * 120.00095 * 359.97438 * 24 23 22 26 26 O 1.34908 * 119.99912 * 179.97438 * 24 23 22 27 27 C 1.39059 * 120.04659 * 309.71904 * 17 16 15 28 28 H 0.97002 * 119.99190 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.98659 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.88130 * 180.29689 * 14 12 11 31 31 H 1.07992 * 120.01854 * 179.75309 * 15 14 12 32 32 H 1.08002 * 119.89107 * 359.95438 * 18 17 16 33 33 H 1.07994 * 119.84437 * 179.97438 * 19 18 17 34 34 H 1.07995 * 119.96164 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00168 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.99452 * 359.97438 * 23 22 21 37 37 H 0.96698 * 114.00253 * 179.97438 * 26 24 23 38 38 H 1.08000 * 120.15275 * 0.03338 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6962 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6962 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3683 -0.0005 10 6 2.0694 -3.5038 0.1057 11 6 3.4548 -3.4402 0.0913 12 6 4.2021 -4.5993 0.1993 13 9 5.5514 -4.5338 0.1844 14 6 3.5719 -5.8280 0.3283 15 6 2.1943 -5.9046 0.3387 16 6 1.4320 -4.7438 0.2302 17 6 -0.0488 -4.8216 0.2461 18 6 -0.7826 -3.9968 1.0999 19 6 -2.1623 -4.0658 1.1174 20 6 -2.8259 -4.9504 0.2919 21 6 -2.1030 -5.7831 -0.5691 22 6 -2.8102 -6.7264 -1.4503 23 6 -4.1576 -6.7895 -1.4282 24 6 -4.8602 -7.7271 -2.3033 25 8 -4.2298 -8.4498 -3.0513 26 8 -6.2076 -7.7905 -2.2808 27 6 -0.7083 -5.7121 -0.5939 28 1 -0.4849 0.8401 0.0004 29 1 3.9504 -2.4855 -0.0042 30 1 4.1615 -6.7284 0.4170 31 1 1.7073 -6.8636 0.4354 32 1 -0.2702 -3.3026 1.7494 33 1 -2.7240 -3.4250 1.7809 34 1 -3.9046 -4.9999 0.3105 35 1 -2.2504 -7.3682 -2.1145 36 1 -4.7174 -6.1480 -0.7636 37 1 -6.5811 -8.4388 -2.8934 38 1 -0.1445 -6.3493 -1.2591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240548211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:37 Heat of formation + Delta-G solvation = -118.104391 kcal Electronic energy + Delta-G solvation = -25899.247976 eV Core-core repulsion = 21779.280141 eV Total energy + Delta-G solvation = -4119.967834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.88213 -41.22088 -41.03544 -39.80443 -38.03988 -37.10634 -35.28803 -34.33033 -33.07333 -31.16790 -31.01469 -29.35273 -27.41119 -25.98104 -24.47926 -23.62084 -22.70769 -22.30965 -20.23711 -20.06966 -19.29849 -19.04565 -18.01835 -17.56379 -17.10406 -16.94659 -16.68129 -16.59724 -16.53738 -15.99224 -15.79472 -15.44155 -15.37886 -15.02164 -14.70022 -14.41240 -14.36521 -14.18604 -13.74893 -13.57576 -13.33495 -13.00347 -12.91585 -12.59507 -12.48015 -12.34507 -12.18931 -12.16449 -11.90773 -11.67398 -11.46009 -11.35478 -10.83023 -10.12369 -9.56602 -9.29970 -8.85609 -8.50168 -6.17665 -0.55608 -0.01055 0.51412 0.67396 0.93817 1.34580 1.42852 1.48279 2.02563 2.13543 2.27376 2.61803 2.94184 3.08959 3.22815 3.45872 3.70117 3.78815 3.92864 4.02463 4.10961 4.20165 4.31060 4.41314 4.43620 4.45056 4.56927 4.81183 4.91274 4.98268 5.03037 5.13965 5.16006 5.26149 5.27403 5.39629 5.45284 5.54021 5.58632 5.62175 5.77241 5.94407 6.02309 6.06477 6.93237 6.95643 7.66099 8.69242 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.003323 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.283854 B = 8424.737830 C =10397.287884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.007 2.993 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.096 0.904 9 O -0.193 6.193 10 C 0.156 3.844 11 C -0.286 4.286 12 C 0.136 3.864 13 F -0.147 7.147 14 C -0.220 4.220 15 C -0.023 4.023 16 C -0.144 4.144 17 C -0.039 4.039 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.094 4.094 21 C -0.094 4.094 22 C 0.016 3.984 23 C -0.212 4.212 24 C 0.518 3.482 25 O -0.558 6.558 26 O -0.499 6.499 27 C -0.084 4.084 28 H 0.274 0.726 29 H 0.127 0.873 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.426 0.574 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -12.698 0.306 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.206 4.206 3 Si 0.827 3.173 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.113 0.887 9 O -0.097 6.097 10 C 0.103 3.897 11 C -0.307 4.307 12 C 0.116 3.884 13 F -0.125 7.125 14 C -0.239 4.239 15 C -0.041 4.041 16 C -0.146 4.146 17 C -0.039 4.039 18 C -0.100 4.100 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.095 4.095 22 C -0.002 4.002 23 C -0.231 4.231 24 C 0.365 3.635 25 O -0.452 6.452 26 O -0.311 6.311 27 C -0.102 4.102 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.179 0.821 31 H 0.186 0.814 32 H 0.113 0.887 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.286 0.714 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.571 -12.385 0.367 14.025 hybrid contribution 0.763 1.032 -0.370 1.336 sum -5.808 -11.352 -0.004 12.752 Atomic orbital electron populations 1.70145 1.07488 1.28899 1.46839 1.26345 0.96758 1.02022 0.95470 0.84800 0.77639 0.75111 0.79705 1.18649 1.19346 1.18515 1.21711 0.92363 0.81545 1.54226 0.88687 1.83990 1.34633 1.11835 1.79216 1.19483 0.89656 0.88124 0.92400 1.21030 0.94110 0.98986 1.16535 1.17656 0.76050 0.94584 1.00081 1.91430 1.29835 1.97389 1.93875 1.20973 0.95354 0.96095 1.11517 1.21029 0.92149 0.97116 0.93831 1.18273 0.92631 0.90778 1.12877 1.18537 0.91345 0.97101 0.96922 1.21378 0.95018 0.96055 0.97546 1.21175 0.93480 0.99303 1.00517 1.21677 1.01060 0.94130 0.94260 1.18869 0.92867 0.98791 0.98925 1.22429 0.94047 0.91739 0.91997 1.22234 0.94488 1.02671 1.03676 1.21054 0.81260 0.80865 0.80281 1.90928 1.68811 1.44081 1.41341 1.85023 1.20743 1.61843 1.63514 1.21570 0.93513 0.97798 0.97288 0.91674 0.85544 0.82075 0.81443 0.88707 0.84561 0.82509 0.84251 0.82291 0.71359 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.19 13.67 21.61 0.30 -50.89 16 2 C -0.01 -0.29 5.49 84.83 0.47 0.18 16 3 Si 1.01 41.22 29.55 68.60 2.03 43.25 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.42 -23.29 9.49 67.92 0.64 -22.65 16 8 H 0.10 4.94 5.21 -2.91 -0.02 4.92 16 9 O -0.19 -10.58 8.10 -21.67 -0.18 -10.76 16 10 C 0.16 7.27 6.55 22.80 0.15 7.42 16 11 C -0.29 -12.44 9.14 22.40 0.20 -12.23 16 12 C 0.14 4.97 7.29 22.40 0.16 5.13 16 13 F -0.15 -5.16 17.26 44.97 0.78 -4.38 16 14 C -0.22 -6.60 10.01 22.31 0.22 -6.38 16 15 C -0.02 -0.70 9.50 22.46 0.21 -0.49 16 16 C -0.14 -5.54 5.48 -19.92 -0.11 -5.65 16 17 C -0.04 -1.42 5.27 -20.09 -0.11 -1.53 16 18 C -0.08 -3.16 8.78 22.57 0.20 -2.96 16 19 C -0.13 -4.00 10.02 22.19 0.22 -3.78 16 20 C -0.09 -2.42 9.41 22.62 0.21 -2.21 16 21 C -0.09 -2.47 5.86 -20.18 -0.12 -2.59 16 22 C 0.02 0.36 9.46 23.86 0.23 0.58 16 23 C -0.21 -4.11 9.53 23.58 0.22 -3.89 16 24 C 0.52 10.59 8.23 69.90 0.58 11.17 16 25 O -0.56 -14.83 16.96 19.45 0.33 -14.50 16 26 O -0.50 -7.29 13.56 -58.23 -0.79 -8.08 16 27 C -0.08 -2.48 9.26 22.81 0.21 -2.27 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.13 5.72 5.64 -2.91 -0.02 5.70 16 30 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.17 3.63 8.04 -2.91 -0.02 3.61 16 32 H 0.09 4.23 7.67 -2.91 -0.02 4.21 16 33 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.16 2.90 6.15 -2.91 -0.02 2.88 16 35 H 0.14 2.93 7.52 -2.91 -0.02 2.91 16 36 H 0.16 2.46 6.07 -2.91 -0.02 2.44 16 37 H 0.43 2.54 8.98 -74.06 -0.67 1.88 16 38 H 0.15 3.59 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -69.75 346.93 6.54 -63.21 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.48 Total: 24.30 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 3.60 Total: -42.15 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.30 Total: -50.89 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.64 Total: -33.34 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -69.75 6.54 -63.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240548211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.897 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds