Wall clock time and date at job start Tue Mar 31 2020 15:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38315 * 119.48300 * 2 1 4 4 C 1.38416 * 119.27683 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.84227 * 180.02562 * 4 3 2 6 6 F 1.39907 * 109.46815 * 359.97438 * 5 4 3 7 7 F 1.39900 * 109.46991 * 119.97616 * 5 4 3 8 8 F 1.39895 * 109.47308 * 239.98195 * 5 4 3 9 9 C 1.39756 * 118.31458 * 0.02562 * 4 3 2 10 10 C 1.48429 * 120.53301 * 179.97438 * 9 4 3 11 11 N 1.30757 * 126.41424 * 0.02562 * 10 9 4 12 12 O 1.21292 * 110.09591 * 180.02562 * 11 10 9 13 13 C 1.33658 * 110.02778 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.44016 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.47551 * 195.02239 * 14 13 12 16 16 N 1.46900 * 109.47395 * 315.02701 * 14 13 12 17 17 C 1.50702 * 109.46869 * 75.02293 * 14 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 14 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 14 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 14 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 N 1.30985 * 107.12490 * 0.24008 * 13 12 11 26 26 C 1.39282 * 118.93082 * 0.24695 * 9 4 3 27 27 N 1.31743 * 120.59655 * 359.47995 * 26 9 4 28 28 H 1.08995 * 109.47156 * 90.00098 * 1 2 3 29 29 H 1.09007 * 109.46761 * 209.99392 * 1 2 3 30 30 H 1.08995 * 109.47394 * 329.99449 * 1 2 3 31 31 H 1.08003 * 120.36132 * 0.02562 * 3 2 1 32 32 H 1.00903 * 111.00086 * 59.99217 * 16 14 13 33 33 H 1.00902 * 111.00206 * 183.95155 * 16 14 13 34 34 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 35 35 H 1.07998 * 119.69800 * 179.72889 * 26 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2040 0.0000 4 6 3.5719 1.1991 -0.0005 5 6 4.3492 2.4902 0.0000 6 9 3.4596 3.5700 0.0005 7 9 5.1548 2.5490 1.1423 8 9 5.1546 2.5502 -1.1423 9 6 4.2304 -0.0337 -0.0016 10 6 5.7133 -0.0965 -0.0028 11 7 6.5334 0.9220 -0.0025 12 8 7.6820 0.5323 -0.0043 13 6 7.7119 -0.8040 -0.0053 14 6 8.9440 -1.6717 -0.0081 15 1 8.6692 -2.6921 -0.2747 16 7 9.9069 -1.1519 -0.9882 17 6 9.5685 -1.6617 1.3635 18 1 9.1179 -1.0851 2.1578 19 6 10.7115 -2.3938 1.6059 20 7 11.2599 -3.0962 0.6388 21 14 11.4811 -2.3875 3.3079 22 1 10.6776 -1.5253 4.2114 23 1 11.5106 -3.7725 3.8430 24 1 12.8668 -1.8602 3.2228 25 7 6.4691 -1.2176 -0.0093 26 6 3.4726 -1.2023 -0.0074 27 7 2.1563 -1.1480 -0.0014 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6452 2.1379 0.0004 32 1 10.1776 -0.2063 -0.7628 33 1 10.7146 -1.7529 -1.0555 34 1 12.0643 -3.6110 0.8093 35 1 3.9686 -2.1616 -0.0127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225699.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:49 Heat of formation + Delta-G solvation = -35.721339 kcal Electronic energy + Delta-G solvation = -28052.343127 eV Core-core repulsion = 23446.303662 eV Total energy + Delta-G solvation = -4606.039465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.13423 -47.70647 -47.48650 -44.94257 -40.69947 -35.73691 -35.37206 -33.83207 -32.99929 -31.99793 -30.60200 -28.34782 -26.81995 -26.48889 -24.46737 -23.85726 -22.78883 -22.09264 -20.53579 -18.66753 -18.41943 -18.16732 -17.68132 -17.17030 -16.61132 -16.49167 -15.79339 -15.38210 -15.24202 -14.93966 -14.45887 -14.41896 -14.39951 -13.98277 -13.92263 -13.66603 -13.66033 -13.11779 -13.00092 -12.79835 -12.72455 -12.35344 -12.34747 -12.23184 -11.56520 -11.48682 -11.25528 -11.07356 -10.63324 -10.50015 -10.32256 -10.27953 -9.98784 -9.74571 -8.93700 -8.80885 -7.60128 -6.39873 -4.56978 0.20334 0.57629 1.88553 2.46477 2.73198 3.11071 3.20412 3.25308 3.38404 3.41887 3.55836 3.64245 3.85445 3.97063 4.13411 4.19546 4.36940 4.53950 4.71304 4.72081 4.90149 5.04807 5.23136 5.31928 5.39703 5.46971 5.57836 5.73807 6.16854 6.21062 6.34431 6.43370 7.06465 7.46709 7.50249 7.59034 8.25014 8.53427 8.67072 8.77006 9.16105 10.60853 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.003546 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.861869 B = 7895.101831 C = 8505.108720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.135 3.865 3 C -0.129 4.129 4 C -0.114 4.114 5 C 0.514 3.486 6 F -0.180 7.180 7 F -0.160 7.160 8 F -0.160 7.160 9 C -0.009 4.009 10 C 0.175 3.825 11 N -0.380 5.380 12 O 0.089 5.911 13 C 0.262 3.738 14 C 0.295 3.705 15 H 0.089 0.911 16 N -0.848 5.848 17 C -0.559 4.559 18 H 0.062 0.938 19 C 0.075 3.925 20 N -0.886 5.886 21 Si 0.909 3.091 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 N -0.494 5.494 26 C 0.153 3.847 27 N -0.460 5.460 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.324 0.676 33 H 0.370 0.630 34 H 0.272 0.728 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 7.623 -1.802 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.003 4.003 3 C -0.149 4.149 4 C -0.125 4.125 5 C 0.460 3.540 6 F -0.161 7.161 7 F -0.141 7.141 8 F -0.141 7.141 9 C -0.013 4.013 10 C -0.095 4.095 11 N -0.088 5.088 12 O 0.028 5.972 13 C 0.042 3.958 14 C 0.182 3.818 15 H 0.107 0.893 16 N -0.382 5.382 17 C -0.599 4.599 18 H 0.080 0.920 19 C -0.129 4.129 20 N -0.524 5.524 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 N -0.227 5.227 26 C -0.007 4.007 27 N -0.168 5.168 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.173 0.827 32 H 0.133 0.867 33 H 0.189 0.811 34 H 0.082 0.918 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.343 7.154 -2.405 19.835 hybrid contribution 1.985 0.957 1.779 2.832 sum -16.358 8.111 -0.626 18.269 Atomic orbital electron populations 1.20775 0.87533 1.04134 1.03705 1.21516 0.97744 0.87499 0.93523 1.21772 0.91923 1.01061 1.00125 1.20509 0.95085 0.92426 1.04443 1.17867 0.77738 0.83183 0.75231 1.93156 1.68369 1.58236 1.96366 1.93271 1.74192 1.96456 1.50158 1.93264 1.74206 1.96455 1.50154 1.18085 0.87978 0.93697 1.01499 1.23380 0.95117 0.86011 1.05004 1.74932 0.90386 1.23091 1.20362 1.85240 1.21947 1.25061 1.64957 1.29960 0.96587 0.81028 0.88180 1.17847 0.80926 0.90448 0.92542 0.89311 1.59385 1.21329 1.07226 1.50228 1.21595 1.11009 1.31577 0.95739 0.91954 1.24944 0.96239 0.93603 0.98159 1.69716 1.21054 1.29341 1.32239 0.86247 0.78992 0.78216 0.82943 1.19545 1.20469 1.20505 1.71946 1.00838 1.26600 1.23347 1.23092 0.88199 0.98011 0.91362 1.67684 1.09283 1.28905 1.10935 0.89707 0.89758 0.90191 0.82715 0.86679 0.81131 0.91786 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.16 36.01 0.37 -0.31 16 2 C 0.14 1.43 6.78 -82.54 -0.56 0.87 16 3 C -0.13 -1.40 9.12 -39.49 -0.36 -1.76 16 4 C -0.11 -1.61 5.42 -103.99 -0.56 -2.18 16 5 C 0.51 7.77 2.78 36.01 0.10 7.87 16 6 F -0.18 -2.30 16.08 2.25 0.04 -2.26 16 7 F -0.16 -2.73 15.13 2.25 0.03 -2.70 16 8 F -0.16 -2.69 15.13 2.25 0.03 -2.65 16 9 C -0.01 -0.14 5.87 -104.74 -0.61 -0.75 16 10 C 0.18 3.43 7.47 -156.12 -1.17 2.26 16 11 N -0.38 -7.80 7.24 30.96 0.22 -7.58 16 12 O 0.09 1.92 11.27 18.07 0.20 2.12 16 13 C 0.26 5.80 7.24 -12.99 -0.09 5.70 16 14 C 0.29 6.91 3.25 -70.02 -0.23 6.69 16 15 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 16 N -0.85 -18.67 9.18 -6.65 -0.06 -18.73 16 17 C -0.56 -14.07 8.71 -34.44 -0.30 -14.37 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.08 1.87 5.38 -17.82 -0.10 1.78 16 20 N -0.89 -22.30 11.55 55.43 0.64 -21.66 16 21 Si 0.91 19.73 29.54 -169.99 -5.02 14.71 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 N -0.49 -10.44 11.28 -9.89 -0.11 -10.56 16 26 C 0.15 2.19 10.87 -17.20 -0.19 2.01 16 27 N -0.46 -5.92 10.26 -9.20 -0.09 -6.02 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.06 16 31 H 0.16 1.22 7.26 -52.48 -0.38 0.84 16 32 H 0.32 6.81 8.96 -39.29 -0.35 6.46 16 33 H 0.37 8.49 7.09 -39.29 -0.28 8.22 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.18 2.53 7.89 -52.49 -0.41 2.12 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -26.94 320.79 -5.64 -32.57 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -2.65 Total: 10.10 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -3.70 Total: 7.81 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.60 Total: -64.55 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.20 Total: 2.12 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.10 Total: -7.61 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.94 -5.64 -32.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225699.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.147 kcal (2) G-P(sol) polarization free energy of solvation -26.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds