Wall clock time and date at job start Tue Mar 31 2020 15:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38315 * 119.48300 * 2 1 4 4 C 1.38416 * 119.27683 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.84227 * 180.02562 * 4 3 2 6 6 F 1.39907 * 109.46815 * 359.97438 * 5 4 3 7 7 F 1.39900 * 109.46991 * 119.97616 * 5 4 3 8 8 F 1.39895 * 109.47308 * 239.98195 * 5 4 3 9 9 C 1.39756 * 118.31458 * 0.02562 * 4 3 2 10 10 C 1.48429 * 120.53301 * 179.97438 * 9 4 3 11 11 N 1.30757 * 126.41424 * 0.02562 * 10 9 4 12 12 O 1.21292 * 110.09591 * 180.02562 * 11 10 9 13 13 C 1.33658 * 110.02778 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.44016 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.47551 * 195.02239 * 14 13 12 16 16 N 1.46900 * 109.47395 * 315.02701 * 14 13 12 17 17 C 1.50702 * 109.46869 * 75.02293 * 14 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 14 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 14 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 14 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 N 1.30985 * 107.12490 * 0.24008 * 13 12 11 26 26 C 1.39282 * 118.93082 * 0.24695 * 9 4 3 27 27 N 1.31743 * 120.59655 * 359.47995 * 26 9 4 28 28 H 1.08995 * 109.47156 * 90.00098 * 1 2 3 29 29 H 1.09007 * 109.46761 * 209.99392 * 1 2 3 30 30 H 1.08995 * 109.47394 * 329.99449 * 1 2 3 31 31 H 1.08003 * 120.36132 * 0.02562 * 3 2 1 32 32 H 1.00903 * 111.00086 * 59.99217 * 16 14 13 33 33 H 1.00902 * 111.00206 * 183.95155 * 16 14 13 34 34 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 35 35 H 1.07998 * 119.69800 * 179.72889 * 26 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2040 0.0000 4 6 3.5719 1.1991 -0.0005 5 6 4.3492 2.4902 0.0000 6 9 3.4596 3.5700 0.0005 7 9 5.1548 2.5490 1.1423 8 9 5.1546 2.5502 -1.1423 9 6 4.2304 -0.0337 -0.0016 10 6 5.7133 -0.0965 -0.0028 11 7 6.5334 0.9220 -0.0025 12 8 7.6820 0.5323 -0.0043 13 6 7.7119 -0.8040 -0.0053 14 6 8.9440 -1.6717 -0.0081 15 1 8.6692 -2.6921 -0.2747 16 7 9.9069 -1.1519 -0.9882 17 6 9.5685 -1.6617 1.3635 18 1 9.1179 -1.0851 2.1578 19 6 10.7115 -2.3938 1.6059 20 7 11.2599 -3.0962 0.6388 21 14 11.4811 -2.3875 3.3079 22 1 10.6776 -1.5253 4.2114 23 1 11.5106 -3.7725 3.8430 24 1 12.8668 -1.8602 3.2228 25 7 6.4691 -1.2176 -0.0093 26 6 3.4726 -1.2023 -0.0074 27 7 2.1563 -1.1480 -0.0014 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6452 2.1379 0.0004 32 1 10.1776 -0.2063 -0.7628 33 1 10.7146 -1.7529 -1.0555 34 1 12.0643 -3.6110 0.8093 35 1 3.9686 -2.1616 -0.0127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225699.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:48 Heat of formation + Delta-G solvation = -54.168069 kcal Electronic energy + Delta-G solvation = -28053.143037 eV Core-core repulsion = 23446.303662 eV Total energy + Delta-G solvation = -4606.839375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.32447 -48.85539 -48.75470 -46.55225 -41.70870 -37.36604 -37.01898 -35.09926 -34.05214 -33.64189 -32.24947 -29.31271 -28.43527 -27.79884 -25.90519 -25.43283 -24.04420 -23.38197 -21.99309 -19.85602 -19.63603 -19.44948 -19.26559 -18.65817 -18.34423 -17.68980 -17.16436 -17.04068 -16.29716 -16.25136 -15.91018 -15.56872 -15.53768 -15.18347 -15.00548 -14.95742 -14.91750 -14.85684 -14.39437 -14.06999 -13.80281 -13.61179 -13.34050 -13.25827 -13.09151 -13.05764 -12.87024 -12.83861 -12.38687 -12.10807 -12.06801 -11.60015 -11.19957 -11.00346 -10.81189 -10.03020 -9.46135 -8.30340 -6.55157 -0.93075 -0.42304 0.27036 1.25501 1.31630 1.38747 1.43228 1.53197 1.85897 2.16419 2.28660 2.34316 2.43982 2.70052 2.78215 2.96739 3.07394 3.16955 3.48482 3.59242 3.80272 3.97143 4.22346 4.36749 4.41618 4.47102 4.68388 4.72985 4.81158 4.86750 5.05047 5.17257 5.37267 5.49580 5.67856 6.36430 6.52164 6.62046 6.92175 7.01994 7.21483 8.69313 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.003546 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.861869 B = 7895.101831 C = 8505.108720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.150 3.850 3 C -0.114 4.114 4 C -0.118 4.118 5 C 0.512 3.488 6 F -0.163 7.163 7 F -0.175 7.175 8 F -0.174 7.174 9 C -0.047 4.047 10 C 0.186 3.814 11 N -0.389 5.389 12 O 0.075 5.925 13 C 0.250 3.750 14 C 0.301 3.699 15 H 0.068 0.932 16 N -0.839 5.839 17 C -0.577 4.577 18 H 0.048 0.952 19 C 0.041 3.959 20 N -0.901 5.901 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.274 1.274 24 H -0.271 1.271 25 N -0.502 5.502 26 C 0.155 3.845 27 N -0.470 5.470 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.193 0.807 32 H 0.329 0.671 33 H 0.365 0.635 34 H 0.277 0.723 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.372 8.379 -1.383 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.011 3.989 3 C -0.133 4.133 4 C -0.129 4.129 5 C 0.458 3.542 6 F -0.145 7.145 7 F -0.157 7.157 8 F -0.155 7.155 9 C -0.051 4.051 10 C -0.085 4.085 11 N -0.100 5.100 12 O 0.018 5.982 13 C 0.031 3.969 14 C 0.189 3.811 15 H 0.085 0.915 16 N -0.372 5.372 17 C -0.617 4.617 18 H 0.067 0.933 19 C -0.163 4.163 20 N -0.539 5.539 21 Si 0.793 3.207 22 H -0.203 1.203 23 H -0.200 1.200 24 H -0.196 1.196 25 N -0.236 5.236 26 C -0.004 4.004 27 N -0.179 5.179 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.210 0.790 32 H 0.139 0.861 33 H 0.183 0.817 34 H 0.087 0.913 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.798 7.913 -1.998 22.342 hybrid contribution 2.517 0.762 1.615 3.086 sum -18.281 8.676 -0.383 20.239 Atomic orbital electron populations 1.20997 0.83932 1.05801 1.05353 1.22347 0.99815 0.86570 0.90155 1.22227 0.90344 1.02843 0.97884 1.20581 0.96384 0.91021 1.04876 1.18009 0.77698 0.84194 0.74307 1.93180 1.67524 1.57522 1.96232 1.93237 1.74855 1.96603 1.50982 1.93233 1.74814 1.96593 1.50855 1.18131 0.86083 0.95334 1.05582 1.23955 0.96705 0.84994 1.02833 1.74909 0.90077 1.23242 1.21777 1.85214 1.22767 1.24591 1.65615 1.29677 0.96621 0.81457 0.89171 1.17543 0.81592 0.89847 0.92136 0.91475 1.59332 1.20857 1.07337 1.49671 1.21688 1.11733 1.32141 0.96145 0.93333 1.25584 0.96378 0.93115 1.01209 1.69776 1.21291 1.29320 1.33490 0.85355 0.78265 0.78097 0.79009 1.20256 1.19977 1.19589 1.71931 1.00712 1.27466 1.23468 1.23015 0.88894 0.97335 0.91136 1.67801 1.08266 1.30215 1.11592 0.87750 0.89473 0.87214 0.78999 0.86061 0.81688 0.91305 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.16 71.24 0.72 -0.11 16 2 C 0.15 2.64 6.78 42.57 0.29 2.93 16 3 C -0.11 -2.06 9.12 22.33 0.20 -1.86 16 4 C -0.12 -3.18 5.42 -19.45 -0.11 -3.28 16 5 C 0.51 15.02 2.78 71.24 0.20 15.22 16 6 F -0.16 -3.80 16.08 44.97 0.72 -3.08 16 7 F -0.18 -6.01 15.13 44.97 0.68 -5.33 16 8 F -0.17 -5.84 15.13 44.97 0.68 -5.16 16 9 C -0.05 -1.52 5.87 -19.94 -0.12 -1.63 16 10 C 0.19 7.47 7.47 137.30 1.03 8.49 16 11 N -0.39 -16.46 7.24 -59.16 -0.43 -16.89 16 12 O 0.07 3.35 11.27 74.71 0.84 4.19 16 13 C 0.25 11.54 7.24 88.36 0.64 12.18 16 14 C 0.30 14.67 3.25 43.42 0.14 14.81 16 15 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 16 N -0.84 -37.97 9.18 -174.96 -1.61 -39.57 16 17 C -0.58 -29.80 8.71 25.60 0.22 -29.58 16 18 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 19 C 0.04 2.02 5.38 84.66 0.46 2.48 16 20 N -0.90 -45.61 11.55 21.45 0.25 -45.36 16 21 Si 0.97 40.51 29.54 68.60 2.03 42.53 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 N -0.50 -22.00 11.28 -302.53 -3.41 -25.42 16 26 C 0.15 4.38 10.87 84.96 0.92 5.30 16 27 N -0.47 -11.18 10.26 -183.03 -1.88 -13.06 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.32 8.07 -2.39 -0.02 0.30 16 31 H 0.19 2.01 7.26 -2.91 -0.02 1.99 16 32 H 0.33 14.22 8.96 -89.69 -0.80 13.42 16 33 H 0.36 17.13 7.09 -89.69 -0.64 16.50 16 34 H 0.28 13.18 8.31 -92.70 -0.77 12.41 16 35 H 0.18 5.05 7.89 -2.91 -0.02 5.03 16 Total: -1.00 -59.31 320.79 2.24 -57.07 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.23 Total: 25.13 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 4.60 Total: 24.95 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -7.08 Total: -140.29 kcal Atomic # 8 Polarization: 3.35 SS G_CDS: 0.84 Total: 4.19 kcal Atomic # 9 Polarization: -15.66 SS G_CDS: 2.08 Total: -13.57 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -59.31 2.24 -57.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225699.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.898 kcal (2) G-P(sol) polarization free energy of solvation -59.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds