Wall clock time and date at job start Tue Mar 31 2020 16:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46818 * 2 1 4 4 C 1.53003 * 109.46818 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47045 * 177.31576 * 4 3 2 6 6 C 1.46903 * 110.99507 * 302.05384 * 5 4 3 7 7 C 1.50688 * 109.47564 * 294.93025 * 6 5 4 8 8 H 1.08007 * 119.99997 * 4.86893 * 7 6 5 9 9 C 1.37881 * 120.00356 * 184.85889 * 7 6 5 10 10 N 1.31508 * 119.99611 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00148 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47398 * 60.00153 * 11 9 7 13 13 H 1.48500 * 109.46911 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47141 * 300.00148 * 11 9 7 15 15 C 1.46899 * 110.99988 * 66.00710 * 5 4 3 16 16 C 1.50703 * 109.46943 * 76.97412 * 15 5 4 17 17 C 1.34832 * 125.88594 * 93.45038 * 16 15 5 18 18 C 1.40908 * 107.43031 * 179.97438 * 17 16 15 19 19 C 1.34945 * 107.42103 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 125.89625 * 180.02562 * 19 18 17 21 21 N 1.36356 * 108.20539 * 359.75612 * 19 18 17 22 22 C 1.46495 * 125.64400 * 180.24192 * 21 19 18 23 23 H 1.09001 * 109.47441 * 299.99650 * 1 2 3 24 24 H 1.08996 * 109.47475 * 60.00272 * 1 2 3 25 25 H 1.09009 * 109.46903 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46562 * 240.00113 * 2 1 3 27 27 H 1.09001 * 109.47264 * 120.00168 * 2 1 3 28 28 H 1.08993 * 109.47001 * 60.00302 * 3 2 1 29 29 H 1.08996 * 109.46875 * 300.00095 * 3 2 1 30 30 H 1.09000 * 109.46998 * 57.31428 * 4 3 2 31 31 H 1.09000 * 109.47079 * 297.31668 * 4 3 2 32 32 H 1.09004 * 109.47312 * 54.94128 * 6 5 4 33 33 H 1.09008 * 109.46407 * 174.92771 * 6 5 4 34 34 H 0.97007 * 120.00332 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47140 * 196.97416 * 15 5 4 36 36 H 1.09001 * 109.47167 * 316.97683 * 15 5 4 37 37 H 1.08003 * 126.28467 * 359.95155 * 17 16 15 38 38 H 1.08000 * 126.29094 * 180.02562 * 18 17 16 39 39 H 1.08995 * 109.47591 * 273.85001 * 22 21 19 40 40 H 1.09004 * 109.46955 * 33.84843 * 22 21 19 41 41 H 1.08998 * 109.47096 * 153.84917 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8260 -0.0642 6 6 3.5494 3.5094 -1.2603 7 6 4.1109 2.8504 -2.4935 8 1 4.7164 1.9606 -2.4022 9 6 3.8517 3.3830 -3.7386 10 7 3.1148 4.4665 -3.8498 11 14 4.5473 2.5655 -5.2674 12 1 4.0382 1.1736 -5.3597 13 1 4.1272 3.3275 -6.4708 14 1 6.0300 2.5459 -5.1872 15 6 3.7089 3.5663 1.1551 16 6 4.6373 3.1637 2.2718 17 6 5.7816 3.7900 2.6128 18 6 6.3364 3.0914 3.7035 19 6 5.5095 2.0634 3.9875 20 35 5.7564 0.7893 5.3628 21 7 4.4622 2.1056 3.1153 22 6 3.3368 1.1682 3.0866 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.8874 -0.8641 31 1 3.9329 0.9711 0.9139 32 1 2.4613 3.4468 -1.2782 33 1 3.8526 4.5563 -1.2376 34 1 2.9327 4.8415 -4.7258 35 1 3.8048 4.6363 0.9708 36 1 2.6811 3.3368 1.4366 37 1 6.1970 4.6662 2.1371 38 1 7.2546 3.3340 4.2178 39 1 3.6020 0.3004 2.4828 40 1 3.1055 0.8470 4.1023 41 1 2.4656 1.6596 2.6536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248775850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:59 Heat of formation + Delta-G solvation = 33.735478 kcal Electronic energy + Delta-G solvation = -20902.128591 eV Core-core repulsion = 17863.470643 eV Total energy + Delta-G solvation = -3038.657948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 328.085 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32645 -39.09892 -35.43053 -34.60691 -33.90457 -32.77636 -30.82053 -29.85972 -27.98500 -27.34125 -25.63744 -24.99247 -22.55528 -21.66037 -21.30064 -19.86006 -18.44291 -17.67756 -17.18540 -16.71129 -16.31511 -16.00283 -15.30341 -15.25318 -14.79778 -14.38643 -14.23143 -13.89230 -13.66026 -13.61182 -13.41631 -13.31688 -13.13068 -12.90816 -12.70524 -12.55936 -12.40802 -12.24824 -11.99747 -11.93334 -11.77868 -11.68336 -11.41320 -11.27310 -11.17403 -10.56579 -9.61205 -9.01268 -8.83148 -8.16881 -6.24884 0.37783 1.01970 1.41034 1.43361 1.50872 1.92355 2.03453 2.42165 3.15630 3.45567 3.81745 3.85097 3.98683 4.00132 4.15597 4.23070 4.32183 4.42406 4.53081 4.59636 4.61752 4.67694 4.80451 4.83634 4.89225 4.96296 5.12022 5.14238 5.21884 5.25804 5.28509 5.38153 5.46881 5.54500 5.68889 5.90049 6.07088 6.10723 6.21228 6.39157 6.65138 6.89430 7.43527 8.93299 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003634 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.986711 B = 7703.791113 C = 8626.504235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.064 3.936 5 N -0.538 5.538 6 C 0.208 3.792 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.959 3.041 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.119 3.881 16 C 0.055 3.945 17 C -0.200 4.200 18 C -0.158 4.158 19 C -0.012 4.012 20 Br 0.011 6.989 21 N -0.430 5.430 22 C 0.056 3.944 23 H 0.060 0.940 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.075 0.925 32 H -0.018 1.018 33 H 0.003 0.997 34 H 0.263 0.737 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 -9.189 19.679 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.187 4.187 4 C -0.064 4.064 5 N -0.261 5.261 6 C 0.082 3.918 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.784 3.216 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.198 1.198 15 C -0.010 4.010 16 C -0.060 4.060 17 C -0.225 4.225 18 C -0.186 4.186 19 C -0.201 4.201 20 Br 0.094 6.906 21 N -0.107 5.107 22 C -0.084 4.084 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.093 0.907 32 H -0.001 1.001 33 H 0.021 0.979 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.247 -9.803 20.015 22.288 hybrid contribution -0.603 0.402 -1.497 1.663 sum -0.356 -9.401 18.518 20.771 Atomic orbital electron populations 1.21746 0.95179 1.02114 1.01478 1.21419 0.96425 0.95244 1.02134 1.22163 0.97257 0.98286 1.01023 1.22186 0.92848 0.90152 1.01181 1.62207 1.59837 1.02639 1.01428 1.19432 0.92374 0.93023 0.86952 1.21357 1.31210 1.11484 0.91352 0.92598 1.25748 0.95651 0.95568 1.02106 1.70053 1.39816 1.22521 1.24843 0.85595 0.78885 0.78614 0.78490 1.19422 1.20895 1.19758 1.20536 0.94533 0.98645 0.87245 1.20391 0.99593 0.91078 0.94899 1.20875 0.96699 1.03999 1.00926 1.20987 1.01204 0.96044 1.00323 1.22067 0.95528 1.02751 0.99709 1.96652 1.96409 1.53895 1.43662 1.43980 1.18626 1.23314 1.24811 1.22473 0.87802 0.93064 1.05109 0.92056 0.94308 0.91355 0.93051 0.90370 0.91822 0.93908 0.92829 0.90661 1.00068 0.97921 0.92823 0.89928 0.93272 0.84050 0.82457 0.89679 0.88076 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.11 -2.89 5.93 30.60 0.18 -2.71 16 3 C -0.15 -4.75 4.27 30.60 0.13 -4.62 16 4 C 0.06 2.31 4.68 86.30 0.40 2.72 16 5 N -0.54 -22.41 4.62 -905.35 -4.18 -26.59 16 6 C 0.21 10.64 4.40 85.55 0.38 11.01 16 7 C -0.52 -28.70 8.63 25.60 0.22 -28.48 16 8 H 0.06 3.10 6.85 -2.91 -0.02 3.08 16 9 C 0.01 0.42 5.46 84.66 0.46 0.88 16 10 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 11 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 C 0.12 4.14 5.08 85.56 0.43 4.57 16 16 C 0.06 1.75 5.98 41.06 0.25 1.99 16 17 C -0.20 -6.23 10.76 22.14 0.24 -5.99 16 18 C -0.16 -4.34 10.82 22.17 0.24 -4.10 16 19 C -0.01 -0.30 7.30 83.23 0.61 0.30 16 20 Br 0.01 0.21 33.42 -20.37 -0.68 -0.47 16 21 N -0.43 -11.63 3.00 -527.07 -1.58 -13.22 16 22 C 0.06 1.16 8.96 127.77 1.14 2.30 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.82 4.95 -2.39 -0.01 1.80 16 29 H 0.04 1.73 6.12 -2.39 -0.01 1.72 16 30 H 0.05 2.21 6.76 -2.39 -0.02 2.19 16 31 H 0.08 2.36 4.16 -2.39 -0.01 2.35 16 32 H -0.02 -0.97 5.94 -2.38 -0.01 -0.99 16 33 H 0.00 0.15 7.84 -2.38 -0.02 0.13 16 34 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 35 H 0.08 2.99 7.73 -2.39 -0.02 2.97 16 36 H 0.05 1.56 5.06 -2.39 -0.01 1.55 16 37 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.08 1.70 6.63 -2.39 -0.02 1.68 16 40 H 0.10 1.66 7.77 -2.38 -0.02 1.64 16 41 H 0.09 1.88 5.28 -2.39 -0.01 1.87 16 Total: -1.00 -62.62 337.60 2.29 -60.33 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.02 Total: 13.31 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 5.40 Total: -24.71 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -5.48 Total: -94.74 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -0.68 Total: -0.47 kcal Total: -62.62 2.29 -60.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248775850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.070 kcal (2) G-P(sol) polarization free energy of solvation -62.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds