Wall clock time and date at job start Tue Mar 31 2020 14:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48506 * 109.46742 * 239.99613 * 3 2 1 5 5 H 1.48505 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47336 * 119.99641 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37620 * 119.74131 * 180.22985 * 10 9 7 12 12 C 1.38639 * 120.24897 * 359.51904 * 11 10 9 13 13 C 1.50706 * 119.74839 * 180.23652 * 12 11 10 14 14 N 1.46500 * 109.47254 * 89.99873 * 13 12 11 15 15 C 1.38356 * 119.99623 * 179.97438 * 14 13 12 16 16 N 1.32986 * 120.84191 * 359.71869 * 15 14 13 17 17 C 1.32081 * 121.02924 * 179.83079 * 16 15 14 18 18 N 1.31550 * 122.71616 * 0.42833 * 17 16 15 19 19 C 1.33193 * 120.71236 * 359.80859 * 18 17 16 20 20 N 1.36847 * 134.28222 * 179.97438 * 19 18 17 21 21 H 0.97000 * 124.99150 * 0.02562 * 20 19 18 22 22 C 1.37106 * 110.02592 * 179.97438 * 20 19 18 23 23 Cl 1.73593 * 125.10806 * 179.97438 * 22 20 19 24 24 C 1.34461 * 109.78272 * 0.02562 * 22 20 19 25 25 C 1.40296 * 120.83180 * 180.02562 * 15 14 13 26 26 C 1.38635 * 120.49790 * 0.25481 * 12 11 10 27 27 C 1.37609 * 120.25139 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.13277 * 0.02722 * 10 9 7 30 30 H 1.08000 * 119.87472 * 179.79709 * 11 10 9 31 31 H 1.08994 * 109.46571 * 210.00074 * 13 12 11 32 32 H 1.09001 * 109.46517 * 329.99490 * 13 12 11 33 33 H 0.96998 * 119.99566 * 359.97438 * 14 13 12 34 34 H 1.08003 * 118.64254 * 180.25825 * 17 16 15 35 35 H 1.07996 * 126.59456 * 179.97438 * 24 22 20 36 36 H 1.08002 * 119.87213 * 180.02562 * 26 12 11 37 37 H 1.08000 * 120.12882 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4141 -3.5340 -1.5592 12 6 0.0636 -4.7524 -1.1014 13 6 -0.6364 -6.0267 -1.4980 14 7 -0.0512 -6.5394 -2.7393 15 6 -0.5341 -7.7082 -3.3006 16 7 -1.5250 -8.3825 -2.7245 17 6 -1.9911 -9.4969 -3.2589 18 7 -1.5090 -10.0079 -4.3711 19 6 -0.5123 -9.4076 -5.0195 20 7 0.1850 -9.6822 -6.1644 21 1 0.0326 -10.4494 -6.7381 22 6 1.1301 -8.7131 -6.3824 23 17 2.2321 -8.6769 -7.7232 24 6 1.0757 -7.7956 -5.4011 25 6 0.0137 -8.2152 -4.4885 26 6 1.1800 -4.8072 -0.2813 27 6 1.8271 -3.6500 0.0871 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1511 -1.4168 -1.5687 30 1 -1.2844 -3.5030 -2.1979 31 1 -0.5178 -6.7675 -0.7073 32 1 -1.6967 -5.8260 -1.6518 33 1 0.6748 -6.0594 -3.1676 34 1 -2.7996 -10.0112 -2.7607 35 1 1.6977 -6.9179 -5.3051 36 1 1.5437 -5.7619 0.0691 37 1 2.6969 -3.6950 0.7257 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307151121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:03 Heat of formation + Delta-G solvation = 92.399705 kcal Electronic energy + Delta-G solvation = -23345.299667 eV Core-core repulsion = 19727.381852 eV Total energy + Delta-G solvation = -3617.917814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86235 -38.89124 -37.89610 -36.97174 -36.01663 -33.92235 -32.31786 -31.29037 -30.30756 -29.40563 -28.79563 -26.69972 -24.08031 -23.70826 -22.53351 -21.10991 -20.91820 -20.16604 -19.26373 -17.64424 -17.41714 -16.56657 -15.95569 -15.70085 -15.36110 -14.58821 -14.32261 -14.22585 -14.03119 -13.92430 -13.61898 -13.59141 -13.50064 -12.66629 -12.56897 -12.06665 -11.90670 -11.77040 -11.62690 -11.25415 -11.13989 -10.96578 -10.69997 -10.59256 -10.54206 -9.74065 -9.51178 -9.27193 -9.22453 -9.08343 -8.99723 -7.61286 -7.55470 -7.49115 -6.89599 -4.49613 0.95375 1.21051 1.47387 2.29872 2.51451 2.77794 2.95501 2.99542 3.00391 3.04859 3.52279 3.83176 4.03477 4.29206 4.45253 4.53278 4.72232 4.90121 5.20415 5.46639 5.57510 5.75163 5.89113 5.95627 6.04240 6.21599 6.27327 6.32512 6.52881 6.73200 6.84085 6.94941 7.07879 7.15949 7.23658 7.34969 7.48081 7.68473 7.81863 7.92603 7.98265 8.16626 8.46757 8.50868 8.75745 8.83531 10.04305 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.002485 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.557260 B =11267.122079 C =12522.360014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.170 4.170 11 C -0.079 4.079 12 C -0.250 4.250 13 C 0.190 3.810 14 N -0.680 5.680 15 C 0.498 3.502 16 N -0.599 5.599 17 C 0.371 3.629 18 N -0.587 5.587 19 C 0.359 3.641 20 N -0.565 5.565 21 H 0.421 0.579 22 C 0.090 3.910 23 Cl -0.011 7.011 24 C -0.116 4.116 25 C -0.271 4.271 26 C -0.067 4.067 27 C -0.230 4.230 28 H 0.283 0.717 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.198 0.802 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 -13.512 -10.871 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.189 4.189 11 C -0.098 4.098 12 C -0.252 4.252 13 C 0.069 3.931 14 N -0.308 5.308 15 C 0.246 3.754 16 N -0.329 5.329 17 C 0.080 3.920 18 N -0.315 5.315 19 C 0.121 3.879 20 N -0.176 5.176 21 H 0.260 0.740 22 C -0.042 4.042 23 Cl 0.018 6.982 24 C -0.144 4.144 25 C -0.285 4.285 26 C -0.086 4.086 27 C -0.250 4.250 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.214 0.786 35 H 0.178 0.822 36 H 0.106 0.894 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.715 -13.789 -10.475 17.332 hybrid contribution 1.275 0.956 -0.981 1.872 sum 0.560 -12.833 -11.457 17.212 Atomic orbital electron populations 1.69812 1.07658 1.29636 1.33931 1.25960 0.94758 1.01509 0.92102 0.86338 0.80178 0.80001 0.80104 1.18707 1.20229 1.18893 1.19644 0.98175 0.91283 1.39585 0.90283 1.17670 0.90855 0.92036 0.87913 1.21311 0.99453 0.96803 1.01380 1.20563 0.97985 0.92609 0.98655 1.18981 1.02651 0.92599 1.10982 1.20037 0.96093 0.93290 0.83685 1.45458 1.37567 1.21230 1.26558 1.18160 0.86400 0.85772 0.85037 1.68174 1.16383 1.12187 1.36184 1.24378 0.94318 0.87261 0.86044 1.67376 1.14772 1.36824 1.12496 1.17839 0.91712 0.91041 0.87313 1.41203 1.30181 1.24202 1.22032 0.74011 1.20365 0.94745 0.94030 0.95081 1.98410 1.58561 1.97845 1.43405 1.21290 1.00048 1.00133 0.92958 1.19701 1.05929 1.01944 1.00948 1.20407 0.94793 0.96485 0.96940 1.20964 1.03915 0.92840 1.07286 0.90573 0.86410 0.89402 0.92023 0.91960 0.75071 0.78565 0.82224 0.89390 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.44 10.95 55.55 0.61 -18.83 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.56 9.06 -37.74 -0.34 -11.91 16 8 H 0.08 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.12 2.97 5.57 -106.82 -0.60 2.38 16 10 C -0.17 -4.15 8.70 -38.87 -0.34 -4.49 16 11 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 12 C -0.25 -4.95 5.27 -104.32 -0.55 -5.50 16 13 C 0.19 3.19 5.85 -5.19 -0.03 3.16 16 14 N -0.68 -10.30 5.68 -61.31 -0.35 -10.65 16 15 C 0.50 7.49 7.55 -154.70 -1.17 6.32 16 16 N -0.60 -8.91 9.72 -13.67 -0.13 -9.05 16 17 C 0.37 4.75 12.23 -92.12 -1.13 3.62 16 18 N -0.59 -7.94 10.47 -13.88 -0.15 -8.08 16 19 C 0.36 4.82 8.48 -155.79 -1.32 3.50 16 20 N -0.57 -6.02 6.04 -9.30 -0.06 -6.08 16 21 H 0.42 3.38 8.96 -40.82 -0.37 3.01 16 22 C 0.09 0.95 7.70 -16.53 -0.13 0.83 16 23 Cl -0.01 -0.09 29.29 -51.86 -1.52 -1.61 16 24 C -0.12 -1.37 10.93 -37.73 -0.41 -1.79 16 25 C -0.27 -3.78 6.32 -105.00 -0.66 -4.45 16 26 C -0.07 -1.39 9.67 -39.66 -0.38 -1.78 16 27 C -0.23 -5.31 9.80 -38.88 -0.38 -5.69 16 28 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 29 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.41 5.94 8.39 -40.82 -0.34 5.60 16 34 H 0.20 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -27.18 341.16 -12.93 -40.11 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.53 Total: 12.41 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -7.91 Total: -16.15 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.07 Total: -52.69 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.18 -12.93 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307151121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.509 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds