Wall clock time and date at job start Tue Mar 31 2020 14:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48506 * 109.46742 * 239.99613 * 3 2 1 5 5 H 1.48505 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47336 * 119.99641 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37620 * 119.74131 * 180.22985 * 10 9 7 12 12 C 1.38639 * 120.24897 * 359.51904 * 11 10 9 13 13 C 1.50706 * 119.74839 * 180.23652 * 12 11 10 14 14 N 1.46500 * 109.47254 * 89.99873 * 13 12 11 15 15 C 1.38356 * 119.99623 * 179.97438 * 14 13 12 16 16 N 1.32986 * 120.84191 * 359.71869 * 15 14 13 17 17 C 1.32081 * 121.02924 * 179.83079 * 16 15 14 18 18 N 1.31550 * 122.71616 * 0.42833 * 17 16 15 19 19 C 1.33193 * 120.71236 * 359.80859 * 18 17 16 20 20 N 1.36847 * 134.28222 * 179.97438 * 19 18 17 21 21 H 0.97000 * 124.99150 * 0.02562 * 20 19 18 22 22 C 1.37106 * 110.02592 * 179.97438 * 20 19 18 23 23 Cl 1.73593 * 125.10806 * 179.97438 * 22 20 19 24 24 C 1.34461 * 109.78272 * 0.02562 * 22 20 19 25 25 C 1.40296 * 120.83180 * 180.02562 * 15 14 13 26 26 C 1.38635 * 120.49790 * 0.25481 * 12 11 10 27 27 C 1.37609 * 120.25139 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.13277 * 0.02722 * 10 9 7 30 30 H 1.08000 * 119.87472 * 179.79709 * 11 10 9 31 31 H 1.08994 * 109.46571 * 210.00074 * 13 12 11 32 32 H 1.09001 * 109.46517 * 329.99490 * 13 12 11 33 33 H 0.96998 * 119.99566 * 359.97438 * 14 13 12 34 34 H 1.08003 * 118.64254 * 180.25825 * 17 16 15 35 35 H 1.07996 * 126.59456 * 179.97438 * 24 22 20 36 36 H 1.08002 * 119.87213 * 180.02562 * 26 12 11 37 37 H 1.08000 * 120.12882 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4141 -3.5340 -1.5592 12 6 0.0636 -4.7524 -1.1014 13 6 -0.6364 -6.0267 -1.4980 14 7 -0.0512 -6.5394 -2.7393 15 6 -0.5341 -7.7082 -3.3006 16 7 -1.5250 -8.3825 -2.7245 17 6 -1.9911 -9.4969 -3.2589 18 7 -1.5090 -10.0079 -4.3711 19 6 -0.5123 -9.4076 -5.0195 20 7 0.1850 -9.6822 -6.1644 21 1 0.0326 -10.4494 -6.7381 22 6 1.1301 -8.7131 -6.3824 23 17 2.2321 -8.6769 -7.7232 24 6 1.0757 -7.7956 -5.4011 25 6 0.0137 -8.2152 -4.4885 26 6 1.1800 -4.8072 -0.2813 27 6 1.8271 -3.6500 0.0871 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1511 -1.4168 -1.5687 30 1 -1.2844 -3.5030 -2.1979 31 1 -0.5178 -6.7675 -0.7073 32 1 -1.6967 -5.8260 -1.6518 33 1 0.6748 -6.0594 -3.1676 34 1 -2.7996 -10.0112 -2.7607 35 1 1.6977 -6.9179 -5.3051 36 1 1.5437 -5.7619 0.0691 37 1 2.6969 -3.6950 0.7257 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307151121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:02 Heat of formation + Delta-G solvation = 80.392924 kcal Electronic energy + Delta-G solvation = -23345.820320 eV Core-core repulsion = 19727.381852 eV Total energy + Delta-G solvation = -3618.438468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.83082 -39.97553 -39.47180 -37.79479 -37.27550 -35.58726 -33.57807 -32.32061 -31.73771 -31.15001 -29.93684 -28.21958 -25.58513 -24.70052 -23.72632 -22.87682 -21.88628 -21.73307 -20.33121 -19.22574 -18.63841 -17.58076 -17.33414 -16.94712 -16.68695 -15.81929 -15.72578 -15.56375 -15.30704 -15.08673 -14.81695 -14.80123 -14.51021 -14.22572 -13.94176 -13.80591 -13.34605 -12.94485 -12.82279 -12.72392 -12.53688 -12.39851 -12.14669 -12.01977 -11.67515 -11.45792 -11.26475 -11.02143 -10.20872 -10.16261 -10.02663 -9.38068 -9.27322 -8.66204 -8.60685 -6.36141 -0.02924 0.36187 0.42834 0.85425 1.15646 1.36490 1.38992 1.48279 1.51682 1.91062 2.19786 2.25857 2.76474 2.99879 3.35872 3.54169 3.73535 3.74598 3.93718 4.20069 4.24733 4.37261 4.54163 4.59470 4.71675 4.86521 5.04528 5.06546 5.15524 5.16357 5.37607 5.44939 5.56295 5.69927 5.74742 5.92656 6.08495 6.10368 6.22224 6.26529 6.37826 6.68291 6.70344 6.92839 7.02070 7.42575 8.30192 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.002485 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.557260 B =11267.122079 C =12522.360014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.193 4.193 11 C -0.081 4.081 12 C -0.229 4.229 13 C 0.206 3.794 14 N -0.683 5.683 15 C 0.486 3.514 16 N -0.616 5.616 17 C 0.365 3.635 18 N -0.590 5.590 19 C 0.344 3.656 20 N -0.555 5.555 21 H 0.434 0.566 22 C 0.101 3.899 23 Cl 0.011 6.989 24 C -0.132 4.132 25 C -0.283 4.283 26 C -0.066 4.066 27 C -0.244 4.244 28 H 0.289 0.711 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.415 0.585 34 H 0.231 0.769 35 H 0.173 0.827 36 H 0.115 0.885 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 -14.938 -11.957 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.212 4.212 11 C -0.100 4.100 12 C -0.230 4.230 13 C 0.083 3.917 14 N -0.312 5.312 15 C 0.236 3.764 16 N -0.346 5.346 17 C 0.075 3.925 18 N -0.318 5.318 19 C 0.105 3.895 20 N -0.166 5.166 21 H 0.275 0.725 22 C -0.032 4.032 23 Cl 0.040 6.960 24 C -0.159 4.159 25 C -0.297 4.297 26 C -0.085 4.085 27 C -0.264 4.264 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.247 0.753 35 H 0.190 0.810 36 H 0.133 0.867 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.531 -15.268 -11.593 19.178 hybrid contribution 1.178 1.139 -0.773 1.812 sum 0.647 -14.129 -12.367 18.788 Atomic orbital electron populations 1.69865 1.08995 1.30741 1.34986 1.26756 0.95470 1.04527 0.91179 0.85275 0.78827 0.75703 0.80089 1.18445 1.19265 1.18395 1.19878 0.98408 0.92571 1.41817 0.90545 1.17993 0.91698 0.93059 0.88803 1.21261 1.00298 0.97104 1.02544 1.20762 0.98188 0.92437 0.98566 1.19253 1.01578 0.93328 1.08886 1.19771 0.95587 0.91688 0.84634 1.45084 1.38076 1.21809 1.26241 1.18256 0.86866 0.85713 0.85602 1.68189 1.16609 1.12966 1.36797 1.25072 0.94724 0.86824 0.85917 1.67454 1.14760 1.36863 1.12701 1.18076 0.92080 0.91235 0.88154 1.41204 1.29532 1.24510 1.21385 0.72520 1.20492 0.94292 0.93291 0.95141 1.98426 1.57676 1.97752 1.42162 1.21482 1.00201 1.01145 0.93077 1.19866 1.06599 1.02311 1.00928 1.20684 0.94536 0.96842 0.96411 1.21152 1.04473 0.93097 1.07672 0.90027 0.88269 0.87822 0.91534 0.92049 0.74745 0.75280 0.80978 0.86673 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.92 10.95 21.83 0.24 -41.68 16 2 C 0.04 1.79 5.14 85.26 0.44 2.22 16 3 Si 0.98 37.13 29.59 68.60 2.03 39.16 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.50 -26.07 9.06 23.46 0.21 -25.86 16 8 H 0.08 3.86 7.91 -2.91 -0.02 3.83 16 9 C 0.09 4.52 5.57 -21.29 -0.12 4.40 16 10 C -0.19 -9.69 8.70 22.73 0.20 -9.49 16 11 C -0.08 -3.48 9.67 22.22 0.21 -3.26 16 12 C -0.23 -8.81 5.27 -19.67 -0.10 -8.91 16 13 C 0.21 6.54 5.85 85.64 0.50 7.04 16 14 N -0.68 -19.67 5.68 -347.88 -1.98 -21.65 16 15 C 0.49 13.93 7.55 133.39 1.01 14.94 16 16 N -0.62 -17.27 9.72 -197.16 -1.92 -19.19 16 17 C 0.37 8.63 12.23 180.87 2.21 10.84 16 18 N -0.59 -14.87 10.47 -197.82 -2.07 -16.95 16 19 C 0.34 8.63 8.48 133.94 1.14 9.76 16 20 N -0.55 -10.66 6.04 -183.34 -1.11 -11.76 16 21 H 0.43 5.97 8.96 -92.71 -0.83 5.13 16 22 C 0.10 1.92 7.70 83.00 0.64 2.56 16 23 Cl 0.01 0.17 29.29 -2.72 -0.08 0.09 16 24 C -0.13 -2.88 10.93 23.47 0.26 -2.63 16 25 C -0.28 -7.47 6.32 -20.11 -0.13 -7.60 16 26 C -0.07 -2.66 9.67 22.22 0.21 -2.45 16 27 C -0.24 -11.39 9.80 22.73 0.22 -11.17 16 28 H 0.29 13.38 8.30 -92.70 -0.77 12.61 16 29 H 0.10 5.29 6.16 -2.91 -0.02 5.27 16 30 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 33 H 0.41 11.43 8.39 -92.71 -0.78 10.65 16 34 H 0.23 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -59.34 341.16 1.57 -57.77 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.45 Total: 33.79 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 6.90 Total: -19.60 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -6.83 Total: -111.22 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -59.34 1.57 -57.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307151121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.168 kcal (2) G-P(sol) polarization free energy of solvation -59.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds