Wall clock time and date at job start Tue Mar 31 2020 14:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46801 * 269.99590 * 3 2 1 5 5 H 1.48495 * 109.47088 * 29.99603 * 3 2 1 6 6 H 1.48504 * 109.46998 * 149.99902 * 3 2 1 7 7 C 1.38650 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00120 * 179.97438 * 7 2 1 10 10 C 1.35749 * 117.00098 * 185.05740 * 9 7 2 11 11 C 1.38882 * 120.06682 * 354.47225 * 10 9 7 12 12 C 1.38098 * 119.93000 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06913 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93119 * 179.97438 * 13 12 11 15 15 S 1.81404 * 109.47012 * 89.99571 * 14 13 12 16 16 C 1.76205 * 102.99705 * 179.97438 * 15 14 13 17 17 C 1.38944 * 120.20105 * 0.27715 * 16 15 14 18 18 C 1.37859 * 120.26294 * 180.12027 * 17 16 15 19 19 C 1.39289 * 120.35007 * 359.54485 * 18 17 16 20 20 C 1.38878 * 119.00537 * 0.43076 * 19 18 17 21 21 C 1.37700 * 120.86551 * 359.64200 * 20 19 18 22 22 C 1.51666 * 107.04713 * 179.45525 * 20 19 18 23 23 C 1.54689 * 101.93439 * 344.48308 * 22 20 19 24 24 O 1.36269 * 129.78436 * 180.85981 * 19 18 17 25 25 C 1.38298 * 120.13855 * 0.24274 * 13 12 11 26 26 C 1.38101 * 120.06632 * 359.46261 * 25 13 12 27 27 H 0.97004 * 119.99557 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.03766 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.96778 * 179.97438 * 12 11 10 30 30 H 1.08994 * 109.47133 * 329.99606 * 14 13 12 31 31 H 1.08997 * 109.46944 * 209.99292 * 14 13 12 32 32 H 1.08002 * 119.86294 * 359.84241 * 17 16 15 33 33 H 1.08002 * 119.82450 * 179.81646 * 18 17 16 34 34 H 1.08003 * 120.03998 * 180.32468 * 21 20 19 35 35 H 1.09000 * 110.93505 * 226.31942 * 22 20 19 36 36 H 1.09003 * 110.96406 * 102.65862 * 22 20 19 37 37 H 1.09004 * 110.74978 * 267.02561 * 23 22 20 38 38 H 1.08995 * 110.75062 * 143.67516 * 23 22 20 39 39 H 1.08002 * 119.96984 * 179.70758 * 25 13 12 40 40 H 1.08009 * 120.03421 * 180.26658 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4056 -0.1060 11 6 3.2233 -3.5744 -0.0922 12 6 3.8532 -4.7987 -0.1997 13 6 5.2296 -4.8616 -0.3206 14 6 5.9138 -6.1993 -0.4372 15 16 6.0420 -6.6625 -2.1864 16 6 6.8546 -8.2247 -2.1241 17 6 7.2125 -8.7782 -0.9010 18 6 7.8505 -9.9992 -0.8509 19 6 8.1339 -10.6939 -2.0245 20 6 7.7723 -10.1335 -3.2427 21 6 7.1363 -8.9135 -3.2981 22 6 8.2154 -11.0990 -4.3251 23 6 9.1951 -12.0155 -3.5549 24 8 8.7342 -11.9049 -2.1976 25 6 5.9797 -3.6998 -0.3292 26 6 5.3552 -2.4722 -0.2281 27 1 -0.4850 0.8401 -0.0004 28 1 2.1487 -3.5260 0.0035 29 1 3.2706 -5.7080 -0.1886 30 1 5.3334 -6.9519 0.0963 31 1 6.9120 -6.1357 -0.0041 32 1 6.9939 -8.2475 0.0140 33 1 8.1281 -10.4214 0.1036 34 1 6.8564 -8.4926 -4.2525 35 1 8.7265 -10.5726 -5.1312 36 1 7.3695 -11.6689 -4.7096 37 1 10.2181 -11.6505 -3.6461 38 1 9.1184 -13.0445 -3.9061 39 1 7.0547 -3.7523 -0.4189 40 1 5.9412 -1.5650 -0.2392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307355991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:09 Heat of formation + Delta-G solvation = -8.264626 kcal Electronic energy + Delta-G solvation = -23032.630675 eV Core-core repulsion = 19483.639026 eV Total energy + Delta-G solvation = -3548.991649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29682 -39.30044 -37.64877 -36.98324 -33.07009 -32.59179 -31.53210 -30.40551 -30.35502 -29.54139 -26.64191 -24.92414 -23.81418 -22.66885 -22.20005 -21.99763 -20.64603 -17.99648 -17.72984 -17.58486 -17.28181 -16.81862 -16.36070 -15.16576 -15.07224 -14.70788 -14.39120 -14.23157 -14.13609 -13.86321 -13.69736 -13.51901 -13.49337 -13.19902 -12.93484 -12.75060 -12.49715 -12.27999 -12.14697 -12.09101 -11.40701 -11.33051 -11.24672 -11.06021 -10.80691 -10.77320 -10.23335 -10.14597 -9.48051 -9.32217 -9.04961 -8.93286 -8.37404 -7.41263 -7.25124 -6.49661 -4.15897 0.93460 1.04617 1.27375 2.04298 2.20699 2.62946 2.95216 3.17757 3.21693 3.35262 3.35391 4.04471 4.17205 4.24079 4.41596 4.54296 4.60932 4.73881 4.86123 4.93462 4.96850 4.99732 5.02732 5.03558 5.26175 5.33556 5.37286 5.51456 5.57500 5.64704 5.69040 5.79106 6.01184 6.03648 6.08524 6.20783 6.21677 6.44415 6.67693 6.85731 6.91092 7.09394 7.18359 7.49251 7.71106 7.94403 8.84770 9.45304 10.57354 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.040959 B = 0.001912 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.442021 B =14644.227784 C =14703.838415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.211 6.211 10 C 0.167 3.833 11 C -0.222 4.222 12 C -0.049 4.049 13 C -0.177 4.177 14 C -0.039 4.039 15 S -0.112 6.112 16 C -0.107 4.107 17 C -0.101 4.101 18 C -0.116 4.116 19 C 0.091 3.909 20 C -0.157 4.157 21 C -0.054 4.054 22 C -0.110 4.110 23 C 0.052 3.948 24 O -0.306 6.306 25 C -0.054 4.054 26 C -0.193 4.193 27 H 0.281 0.719 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.936 -20.387 -5.440 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.115 6.115 10 C 0.114 3.886 11 C -0.241 4.241 12 C -0.070 4.070 13 C -0.180 4.180 14 C -0.186 4.186 15 S 0.136 5.864 16 C -0.220 4.220 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.043 3.957 20 C -0.160 4.160 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.023 4.023 24 O -0.221 6.221 25 C -0.074 4.074 26 C -0.213 4.213 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.420 -19.502 -6.201 26.237 hybrid contribution 0.518 -0.087 0.870 1.016 sum 16.938 -19.589 -5.331 26.439 Atomic orbital electron populations 1.69646 1.05600 1.28677 1.47199 1.24494 0.95056 0.98941 0.95473 0.86172 0.80332 0.81301 0.79070 1.19769 1.20681 1.18306 1.20799 0.76749 0.96757 1.52320 0.87448 1.83571 1.22790 1.25834 1.79348 1.19179 0.91745 0.85495 0.92221 1.21260 1.01271 0.91650 1.09955 1.20666 0.93074 0.97053 0.96160 1.18589 0.93675 0.91817 1.13940 1.22380 1.03534 0.98748 0.93910 1.86085 1.71496 1.15577 1.13283 1.21817 1.04347 1.00182 0.95676 1.20946 0.99223 0.95391 0.96941 1.20131 1.02877 0.94422 0.96228 1.19509 0.95730 0.85841 0.94598 1.20644 1.03891 0.96751 0.94689 1.19862 0.97870 0.92669 0.97396 1.21808 0.99731 0.95795 0.97387 1.23817 0.97867 1.01455 0.79182 1.86850 1.72703 1.31241 1.31277 1.20494 0.98506 0.91096 0.97274 1.20190 0.91947 0.97828 1.11290 0.90896 0.84659 0.86936 0.89408 0.89428 0.84823 0.85202 0.85266 0.88914 0.88991 0.90543 0.87621 0.86621 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.73 13.96 55.48 0.77 -23.95 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.19 28.62 -169.99 -4.86 16.32 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.74 9.95 30.88 0.31 -10.43 16 8 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 9 O -0.21 -5.42 8.59 0.06 0.00 -5.42 16 10 C 0.17 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.22 -4.61 9.17 -39.39 -0.36 -4.97 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.18 -2.78 5.14 -104.57 -0.54 -3.32 16 14 C -0.04 -0.48 4.46 36.01 0.16 -0.32 16 15 S -0.11 -1.49 21.91 -107.50 -2.36 -3.84 16 16 C -0.11 -1.28 6.11 -39.04 -0.24 -1.52 16 17 C -0.10 -1.09 9.35 -39.46 -0.37 -1.46 16 18 C -0.12 -1.22 10.05 -39.33 -0.40 -1.61 16 19 C 0.09 0.99 7.04 -38.95 -0.27 0.72 16 20 C -0.16 -1.60 6.26 -104.11 -0.65 -2.26 16 21 C -0.05 -0.60 9.79 -39.50 -0.39 -0.99 16 22 C -0.11 -0.75 7.12 -26.52 -0.19 -0.93 16 23 C 0.05 0.33 8.01 38.05 0.30 0.64 16 24 O -0.31 -3.15 11.11 -20.60 -0.23 -3.37 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 26 C -0.19 -3.67 9.99 -39.40 -0.39 -4.06 16 27 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 31 H 0.09 0.95 7.70 -51.93 -0.40 0.55 16 32 H 0.13 1.24 5.88 -52.49 -0.31 0.94 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -29.90 352.98 -10.13 -40.03 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.63 Total: 2.78 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -4.15 Total: -27.87 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.77 Total: -23.95 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.23 Total: -8.79 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.32 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.36 Total: -3.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.90 -10.13 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307355991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.769 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds