Wall clock time and date at job start Tue Mar 31 2020 14:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46801 * 269.99590 * 3 2 1 5 5 H 1.48495 * 109.47088 * 29.99603 * 3 2 1 6 6 H 1.48504 * 109.46998 * 149.99902 * 3 2 1 7 7 C 1.38650 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00120 * 179.97438 * 7 2 1 10 10 C 1.35749 * 117.00098 * 185.05740 * 9 7 2 11 11 C 1.38882 * 120.06682 * 354.47225 * 10 9 7 12 12 C 1.38098 * 119.93000 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06913 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93119 * 179.97438 * 13 12 11 15 15 S 1.81404 * 109.47012 * 89.99571 * 14 13 12 16 16 C 1.76205 * 102.99705 * 179.97438 * 15 14 13 17 17 C 1.38944 * 120.20105 * 0.27715 * 16 15 14 18 18 C 1.37859 * 120.26294 * 180.12027 * 17 16 15 19 19 C 1.39289 * 120.35007 * 359.54485 * 18 17 16 20 20 C 1.38878 * 119.00537 * 0.43076 * 19 18 17 21 21 C 1.37700 * 120.86551 * 359.64200 * 20 19 18 22 22 C 1.51666 * 107.04713 * 179.45525 * 20 19 18 23 23 C 1.54689 * 101.93439 * 344.48308 * 22 20 19 24 24 O 1.36269 * 129.78436 * 180.85981 * 19 18 17 25 25 C 1.38298 * 120.13855 * 0.24274 * 13 12 11 26 26 C 1.38101 * 120.06632 * 359.46261 * 25 13 12 27 27 H 0.97004 * 119.99557 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.03766 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.96778 * 179.97438 * 12 11 10 30 30 H 1.08994 * 109.47133 * 329.99606 * 14 13 12 31 31 H 1.08997 * 109.46944 * 209.99292 * 14 13 12 32 32 H 1.08002 * 119.86294 * 359.84241 * 17 16 15 33 33 H 1.08002 * 119.82450 * 179.81646 * 18 17 16 34 34 H 1.08003 * 120.03998 * 180.32468 * 21 20 19 35 35 H 1.09000 * 110.93505 * 226.31942 * 22 20 19 36 36 H 1.09003 * 110.96406 * 102.65862 * 22 20 19 37 37 H 1.09004 * 110.74978 * 267.02561 * 23 22 20 38 38 H 1.08995 * 110.75062 * 143.67516 * 23 22 20 39 39 H 1.08002 * 119.96984 * 179.70758 * 25 13 12 40 40 H 1.08009 * 120.03421 * 180.26658 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4056 -0.1060 11 6 3.2233 -3.5744 -0.0922 12 6 3.8532 -4.7987 -0.1997 13 6 5.2296 -4.8616 -0.3206 14 6 5.9138 -6.1993 -0.4372 15 16 6.0420 -6.6625 -2.1864 16 6 6.8546 -8.2247 -2.1241 17 6 7.2125 -8.7782 -0.9010 18 6 7.8505 -9.9992 -0.8509 19 6 8.1339 -10.6939 -2.0245 20 6 7.7723 -10.1335 -3.2427 21 6 7.1363 -8.9135 -3.2981 22 6 8.2154 -11.0990 -4.3251 23 6 9.1951 -12.0155 -3.5549 24 8 8.7342 -11.9049 -2.1976 25 6 5.9797 -3.6998 -0.3292 26 6 5.3552 -2.4722 -0.2281 27 1 -0.4850 0.8401 -0.0004 28 1 2.1487 -3.5260 0.0035 29 1 3.2706 -5.7080 -0.1886 30 1 5.3334 -6.9519 0.0963 31 1 6.9120 -6.1357 -0.0041 32 1 6.9939 -8.2475 0.0140 33 1 8.1281 -10.4214 0.1036 34 1 6.8564 -8.4926 -4.2525 35 1 8.7265 -10.5726 -5.1312 36 1 7.3695 -11.6689 -4.7096 37 1 10.2181 -11.6505 -3.6461 38 1 9.1184 -13.0445 -3.9061 39 1 7.0547 -3.7523 -0.4189 40 1 5.9412 -1.5650 -0.2392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307355991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:08 Heat of formation + Delta-G solvation = -23.191107 kcal Electronic energy + Delta-G solvation = -23033.277935 eV Core-core repulsion = 19483.639026 eV Total energy + Delta-G solvation = -3549.638909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98871 -40.93318 -38.60085 -38.39895 -34.54659 -33.74754 -32.91808 -31.86154 -31.18880 -30.24691 -28.17663 -26.57722 -24.54952 -23.74306 -23.41418 -22.71745 -22.13070 -19.85442 -19.15839 -18.43949 -18.30821 -17.59164 -17.04000 -16.72661 -16.35909 -16.01195 -15.80322 -15.57108 -15.24214 -15.09126 -14.86345 -14.73246 -14.36892 -14.18573 -14.10006 -14.03364 -13.79336 -13.50703 -13.37373 -12.92491 -12.66411 -12.53580 -12.46692 -12.28576 -12.01440 -11.99614 -11.94959 -11.31305 -11.17469 -10.87889 -10.13531 -9.86302 -9.79635 -9.01917 -8.51157 -8.19013 -6.23887 0.09750 0.13919 0.25217 0.53821 0.97435 1.31949 1.35853 1.51946 1.56720 2.27415 2.30463 2.58213 2.77182 3.02581 3.15242 3.43394 3.67030 3.76499 3.87571 3.89100 4.11115 4.15203 4.17325 4.20585 4.28035 4.48947 4.51233 4.58163 4.63095 4.73099 4.81450 4.86994 4.92612 4.96178 5.06140 5.19892 5.21204 5.31663 5.32649 5.46753 5.52440 5.66117 5.76728 5.86932 6.14120 6.17836 6.82762 7.55352 8.60068 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.040959 B = 0.001912 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.442021 B =14644.227784 C =14703.838415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.400 4.400 8 H 0.082 0.918 9 O -0.241 6.241 10 C 0.128 3.872 11 C -0.238 4.238 12 C -0.053 4.053 13 C -0.149 4.149 14 C -0.036 4.036 15 S -0.138 6.138 16 C -0.118 4.118 17 C -0.103 4.103 18 C -0.125 4.125 19 C 0.079 3.921 20 C -0.164 4.164 21 C -0.065 4.065 22 C -0.108 4.108 23 C 0.047 3.953 24 O -0.324 6.324 25 C -0.047 4.047 26 C -0.192 4.192 27 H 0.285 0.715 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.401 -22.574 -5.959 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.100 0.900 9 O -0.148 6.148 10 C 0.078 3.922 11 C -0.257 4.257 12 C -0.072 4.072 13 C -0.152 4.152 14 C -0.183 4.183 15 S 0.108 5.892 16 C -0.231 4.231 17 C -0.126 4.126 18 C -0.145 4.145 19 C 0.032 3.968 20 C -0.167 4.167 21 C -0.088 4.088 22 C -0.145 4.145 23 C -0.028 4.028 24 O -0.238 6.238 25 C -0.067 4.067 26 C -0.211 4.211 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.174 0.826 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.921 -21.737 -6.722 30.241 hybrid contribution -0.269 0.091 0.946 0.988 sum 19.652 -21.646 -5.776 29.801 Atomic orbital electron populations 1.69732 1.06916 1.29654 1.49806 1.25300 0.95899 1.02221 0.95445 0.85214 0.78849 0.77357 0.79284 1.19120 1.19218 1.18552 1.20713 0.78023 0.96179 1.52737 0.90020 1.83518 1.21324 1.27457 1.82538 1.19734 0.93281 0.85069 0.94143 1.21264 1.00349 0.93030 1.11068 1.20925 0.94321 0.96435 0.95559 1.18989 0.92947 0.93667 1.09584 1.22406 1.04944 0.96905 0.94033 1.86136 1.72525 1.17307 1.13205 1.21760 1.05269 0.99489 0.96545 1.21129 0.98868 0.95558 0.97069 1.20387 1.02691 0.94436 0.97020 1.19802 0.95734 0.86188 0.95104 1.20994 1.03121 0.96687 0.95874 1.20015 0.98148 0.93147 0.97527 1.21923 1.00306 0.95264 0.97020 1.24132 0.98234 1.03029 0.77358 1.86830 1.72694 1.30873 1.33448 1.20960 1.00534 0.89856 0.95324 1.20520 0.90516 0.99811 1.10222 0.90529 0.87169 0.84649 0.87639 0.86739 0.83315 0.83664 0.84781 0.87157 0.88058 0.89365 0.85113 0.82581 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 13.96 21.61 0.30 -54.42 16 2 C 0.01 0.58 5.49 84.83 0.47 1.05 16 3 Si 0.97 45.04 28.62 68.60 1.96 47.01 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.40 -23.40 9.95 67.92 0.68 -22.72 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 9 O -0.24 -12.93 8.59 -22.72 -0.20 -13.13 16 10 C 0.13 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -10.24 9.17 22.39 0.21 -10.03 16 12 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 13 C -0.15 -4.24 5.14 -19.83 -0.10 -4.34 16 14 C -0.04 -0.75 4.46 71.24 0.32 -0.43 16 15 S -0.14 -3.28 21.91 -56.49 -1.24 -4.52 16 16 C -0.12 -2.52 6.11 22.62 0.14 -2.38 16 17 C -0.10 -1.92 9.35 22.35 0.21 -1.71 16 18 C -0.13 -2.31 10.05 22.43 0.23 -2.09 16 19 C 0.08 1.56 7.04 22.68 0.16 1.72 16 20 C -0.16 -2.97 6.26 -19.53 -0.12 -3.10 16 21 C -0.06 -1.31 9.79 22.32 0.22 -1.09 16 22 C -0.11 -1.16 7.12 30.73 0.22 -0.94 16 23 C 0.05 0.46 8.01 72.56 0.58 1.04 16 24 O -0.32 -5.89 11.11 -96.63 -1.07 -6.96 16 25 C -0.05 -1.37 9.69 22.25 0.22 -1.15 16 26 C -0.19 -7.03 9.99 22.39 0.22 -6.81 16 27 H 0.29 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.11 1.92 7.69 -2.39 -0.02 1.90 16 31 H 0.11 1.88 7.70 -2.39 -0.02 1.86 16 32 H 0.15 2.20 5.88 -2.91 -0.02 2.18 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -68.91 352.98 4.82 -64.08 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.07 Total: 16.48 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 4.00 Total: -48.53 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.30 Total: -54.42 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.27 Total: -20.09 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.96 Total: 47.01 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.24 Total: -4.52 kcal Total: -68.91 4.82 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307355991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.891 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds