Wall clock time and date at job start Tue Mar 31 2020 14:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00351 * 2 1 4 4 H 1.48508 * 109.47157 * 274.50585 * 3 2 1 5 5 H 1.48499 * 109.47110 * 34.50229 * 3 2 1 6 6 H 1.48502 * 109.47366 * 154.50338 * 3 2 1 7 7 C 1.37878 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00281 * 4.64953 * 7 2 1 9 9 C 1.50695 * 120.00007 * 184.65635 * 7 2 1 10 10 C 1.53001 * 115.55266 * 84.80940 * 9 7 2 11 11 O 1.42907 * 109.46750 * 65.17283 * 10 9 7 12 12 C 1.34923 * 117.00026 * 175.07160 * 11 10 9 13 13 O 1.21646 * 119.99771 * 5.14735 * 12 11 10 14 14 C 1.46296 * 120.00102 * 185.14909 * 12 11 10 15 15 C 1.36756 * 125.18113 * 185.06948 * 14 12 11 16 16 C 1.36767 * 114.71184 * 180.02562 * 15 14 12 17 17 C 1.36496 * 114.78962 * 0.02562 * 16 15 14 18 18 C 1.47774 * 125.14917 * 180.02562 * 17 16 15 19 19 C 1.39602 * 120.14423 * 359.72892 * 18 17 16 20 20 C 1.37958 * 119.84986 * 179.72256 * 19 18 17 21 21 C 1.38365 * 120.14388 * 0.54792 * 20 19 18 22 22 C 1.38361 * 120.29683 * 359.72535 * 21 20 19 23 23 C 1.37949 * 120.15380 * 359.97438 * 22 21 20 24 24 S 1.75841 * 109.70451 * 359.73502 * 17 16 15 25 25 C 1.52997 * 117.49853 * 230.48501 * 9 7 2 26 26 C 1.53007 * 117.49705 * 299.14118 * 9 7 2 27 27 H 0.97000 * 119.99536 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47165 * 305.17550 * 10 9 7 29 29 H 1.08999 * 109.47199 * 185.16974 * 10 9 7 30 30 H 1.07999 * 122.64328 * 359.97438 * 15 14 12 31 31 H 1.07999 * 122.60311 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.07627 * 359.97202 * 19 18 17 33 33 H 1.07993 * 119.92453 * 180.27376 * 20 19 18 34 34 H 1.07996 * 119.84778 * 179.74500 * 21 20 19 35 35 H 1.08005 * 119.92316 * 180.02562 * 22 21 20 36 36 H 1.07991 * 120.07849 * 180.02562 * 23 22 21 37 37 H 1.09003 * 117.50181 * 215.00070 * 25 9 7 38 38 H 1.08998 * 117.50358 * 0.02562 * 25 9 7 39 39 H 1.08999 * 117.49558 * 359.97438 * 26 9 7 40 40 H 1.09007 * 117.49472 * 144.97212 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4016 2.1013 -1.3958 5 1 1.4976 2.6232 0.7931 6 1 3.5912 1.4144 0.6027 7 6 2.0045 -1.1941 -0.0005 8 1 1.4671 -2.1279 -0.0768 9 6 3.5077 -1.1964 0.1054 10 6 4.0692 -1.1291 1.5271 11 8 3.7116 -2.3166 2.2371 12 6 4.2175 -2.4633 3.4793 13 8 4.8652 -1.5648 3.9823 14 6 3.9871 -3.7029 4.2213 15 6 4.3635 -3.9274 5.5167 16 6 4.0409 -5.1657 5.9995 17 6 3.3963 -5.9764 5.1105 18 6 2.9436 -7.3551 5.3898 19 6 3.1708 -7.9273 6.6427 20 6 2.7405 -9.2128 6.8988 21 6 2.0952 -9.9387 5.9133 22 6 1.8720 -9.3797 4.6676 23 6 2.2916 -8.0930 4.4002 24 16 3.1787 -5.1290 3.5851 25 6 4.2872 -2.0173 -0.9238 26 6 4.2949 -0.4885 -0.9993 27 1 -0.4849 0.8401 0.0004 28 1 3.6561 -0.2606 2.0401 29 1 5.1551 -1.0439 1.4852 30 1 4.8760 -3.1856 6.1113 31 1 4.2784 -5.4780 7.0056 32 1 3.6785 -7.3634 7.4112 33 1 2.9116 -9.6550 7.8691 34 1 1.7641 -10.9462 6.1177 35 1 1.3674 -9.9516 3.9029 36 1 2.1164 -7.6577 3.4276 37 1 5.2000 -2.5095 -0.5882 38 1 3.7128 -2.5554 -1.6779 39 1 3.7254 -0.0215 -1.8028 40 1 5.2125 0.0255 -0.7131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327055281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:46 Heat of formation + Delta-G solvation = 1.027209 kcal Electronic energy + Delta-G solvation = -23779.333738 eV Core-core repulsion = 20230.745013 eV Total energy + Delta-G solvation = -3548.588725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02279 -39.51545 -37.67905 -36.91282 -35.48841 -32.49457 -32.12141 -31.28408 -29.11713 -27.21619 -25.60598 -24.91564 -23.12512 -22.20921 -21.82312 -21.44066 -19.27177 -18.89287 -18.39506 -17.18648 -16.67127 -16.16069 -15.94451 -15.86158 -15.27971 -14.89602 -14.81507 -14.37065 -13.85717 -13.76470 -13.65942 -13.15120 -12.98094 -12.69235 -12.59396 -12.49253 -12.28063 -12.11875 -11.69519 -11.42033 -11.15674 -10.97221 -10.80082 -10.59965 -10.40187 -10.13187 -10.06815 -9.89665 -9.58823 -9.27755 -9.08780 -8.67831 -8.64296 -8.54087 -8.17388 -6.13388 -4.16238 -0.05823 1.09104 1.22993 1.34239 1.81244 2.32961 3.06458 3.11911 3.26253 3.36973 3.40494 3.57145 4.28093 4.39212 4.57490 4.64708 4.77760 4.80957 5.05290 5.09884 5.11508 5.18658 5.23404 5.36292 5.51802 5.63148 5.69536 5.78235 5.90124 5.93702 5.99322 6.07191 6.12645 6.16613 6.18886 6.26801 6.29690 6.39403 6.62938 6.63731 6.83973 7.03583 7.05518 7.67302 8.15082 8.48064 8.91272 9.48852 10.98305 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.002824 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.942870 B = 9911.645477 C =10458.231017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.258 1.258 7 C -0.483 4.483 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.109 3.891 11 O -0.320 6.320 12 C 0.528 3.472 13 O -0.509 6.509 14 C -0.240 4.240 15 C -0.055 4.055 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.017 4.017 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.109 4.109 24 S 0.245 5.755 25 C -0.174 4.174 26 C -0.188 4.188 27 H 0.265 0.735 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -17.728 12.401 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.099 0.901 9 C -0.005 4.005 10 C 0.035 3.965 11 O -0.235 6.235 12 C 0.372 3.628 13 O -0.401 6.401 14 C -0.359 4.359 15 C -0.088 4.088 16 C -0.172 4.172 17 C -0.266 4.266 18 C -0.019 4.019 19 C -0.120 4.120 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.128 4.128 24 S 0.518 5.482 25 C -0.211 4.211 26 C -0.225 4.225 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.580 -17.620 11.020 21.799 hybrid contribution 1.058 1.627 1.366 2.373 sum 7.638 -15.993 12.386 21.622 Atomic orbital electron populations 1.69897 1.06284 1.27121 1.49756 1.24992 0.94640 0.98981 0.93948 0.86925 0.80836 0.83661 0.78448 1.20289 1.21814 1.18209 1.20212 0.86222 0.94738 1.50814 0.90073 1.19325 0.95217 1.01085 0.84886 1.22696 0.97031 0.84032 0.92786 1.86229 1.66439 1.44890 1.25956 1.19721 0.76532 0.85349 0.81193 1.90844 1.38516 1.41172 1.69547 1.23622 1.14068 0.98772 0.99399 1.20453 0.98274 0.97257 0.92822 1.20307 1.02670 0.93200 1.01022 1.23973 1.05521 0.97781 0.99312 1.18067 0.98981 0.90219 0.94604 1.21218 0.99596 0.95415 0.95722 1.21095 0.98638 0.94353 0.99475 1.21278 0.98812 1.00022 0.93470 1.21092 0.99708 0.95025 0.97270 1.21320 0.97988 0.94779 0.98735 1.84549 1.51406 1.02507 1.09773 1.22843 1.01292 0.92770 1.04219 1.23009 1.01324 0.95190 1.03024 0.92496 0.91581 0.93589 0.82886 0.83447 0.85474 0.85632 0.85830 0.85454 0.85619 0.90830 0.89097 0.88835 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 21.54 24.94 -169.99 -4.24 17.29 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.03 5.69 56.52 0.32 -5.71 16 7 C -0.48 -13.43 9.36 -34.44 -0.32 -13.75 16 8 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 9 C 0.00 -0.10 1.03 -155.66 -0.16 -0.26 16 10 C 0.11 2.44 4.83 37.16 0.18 2.62 16 11 O -0.32 -6.99 9.88 -41.11 -0.41 -7.40 16 12 C 0.53 10.44 7.90 33.97 0.27 10.71 16 13 O -0.51 -10.83 16.58 -19.38 -0.32 -11.16 16 14 C -0.24 -3.86 6.43 -36.88 -0.24 -4.10 16 15 C -0.06 -0.73 9.88 -40.65 -0.40 -1.13 16 16 C -0.14 -1.56 9.66 -40.74 -0.39 -1.95 16 17 C -0.15 -1.73 6.41 -36.31 -0.23 -1.96 16 18 C -0.02 -0.18 5.87 -104.98 -0.62 -0.79 16 19 C -0.10 -0.86 9.55 -39.18 -0.37 -1.23 16 20 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 21 C -0.12 -0.86 10.04 -39.49 -0.40 -1.26 16 22 C -0.11 -0.93 10.03 -39.64 -0.40 -1.33 16 23 C -0.11 -1.09 9.60 -39.18 -0.38 -1.46 16 24 S 0.25 3.43 22.03 -107.50 -2.37 1.06 16 25 C -0.17 -3.51 9.96 -26.70 -0.27 -3.78 16 26 C -0.19 -3.93 7.32 -26.69 -0.20 -4.13 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.07 1.57 7.06 -51.93 -0.37 1.21 16 29 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 30 H 0.15 1.84 8.04 -52.49 -0.42 1.42 16 31 H 0.15 1.17 6.91 -52.49 -0.36 0.81 16 32 H 0.13 0.86 6.76 -52.49 -0.35 0.51 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.13 1.21 7.27 -52.49 -0.38 0.83 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 39 H 0.09 2.00 7.13 -51.93 -0.37 1.63 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -32.17 356.84 -10.45 -42.62 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.85 Total: 1.43 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -4.42 Total: -22.97 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.73 Total: -18.55 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.24 Total: 17.29 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.37 Total: 1.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.17 -10.45 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327055281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.651 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds