Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00351 * 2 1 4 4 H 1.48508 * 109.47157 * 274.50585 * 3 2 1 5 5 H 1.48499 * 109.47110 * 34.50229 * 3 2 1 6 6 H 1.48502 * 109.47366 * 154.50338 * 3 2 1 7 7 C 1.37878 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00281 * 4.64953 * 7 2 1 9 9 C 1.50695 * 120.00007 * 184.65635 * 7 2 1 10 10 C 1.53001 * 115.55266 * 84.80940 * 9 7 2 11 11 O 1.42907 * 109.46750 * 65.17283 * 10 9 7 12 12 C 1.34923 * 117.00026 * 175.07160 * 11 10 9 13 13 O 1.21646 * 119.99771 * 5.14735 * 12 11 10 14 14 C 1.46296 * 120.00102 * 185.14909 * 12 11 10 15 15 C 1.36756 * 125.18113 * 185.06948 * 14 12 11 16 16 C 1.36767 * 114.71184 * 180.02562 * 15 14 12 17 17 C 1.36496 * 114.78962 * 0.02562 * 16 15 14 18 18 C 1.47774 * 125.14917 * 180.02562 * 17 16 15 19 19 C 1.39602 * 120.14423 * 359.72892 * 18 17 16 20 20 C 1.37958 * 119.84986 * 179.72256 * 19 18 17 21 21 C 1.38365 * 120.14388 * 0.54792 * 20 19 18 22 22 C 1.38361 * 120.29683 * 359.72535 * 21 20 19 23 23 C 1.37949 * 120.15380 * 359.97438 * 22 21 20 24 24 S 1.75841 * 109.70451 * 359.73502 * 17 16 15 25 25 C 1.52997 * 117.49853 * 230.48501 * 9 7 2 26 26 C 1.53007 * 117.49705 * 299.14118 * 9 7 2 27 27 H 0.97000 * 119.99536 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47165 * 305.17550 * 10 9 7 29 29 H 1.08999 * 109.47199 * 185.16974 * 10 9 7 30 30 H 1.07999 * 122.64328 * 359.97438 * 15 14 12 31 31 H 1.07999 * 122.60311 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.07627 * 359.97202 * 19 18 17 33 33 H 1.07993 * 119.92453 * 180.27376 * 20 19 18 34 34 H 1.07996 * 119.84778 * 179.74500 * 21 20 19 35 35 H 1.08005 * 119.92316 * 180.02562 * 22 21 20 36 36 H 1.07991 * 120.07849 * 180.02562 * 23 22 21 37 37 H 1.09003 * 117.50181 * 215.00070 * 25 9 7 38 38 H 1.08998 * 117.50358 * 0.02562 * 25 9 7 39 39 H 1.08999 * 117.49558 * 359.97438 * 26 9 7 40 40 H 1.09007 * 117.49472 * 144.97212 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4016 2.1013 -1.3958 5 1 1.4976 2.6232 0.7931 6 1 3.5912 1.4144 0.6027 7 6 2.0045 -1.1941 -0.0005 8 1 1.4671 -2.1279 -0.0768 9 6 3.5077 -1.1964 0.1054 10 6 4.0692 -1.1291 1.5271 11 8 3.7116 -2.3166 2.2371 12 6 4.2175 -2.4633 3.4793 13 8 4.8652 -1.5648 3.9823 14 6 3.9871 -3.7029 4.2213 15 6 4.3635 -3.9274 5.5167 16 6 4.0409 -5.1657 5.9995 17 6 3.3963 -5.9764 5.1105 18 6 2.9436 -7.3551 5.3898 19 6 3.1708 -7.9273 6.6427 20 6 2.7405 -9.2128 6.8988 21 6 2.0952 -9.9387 5.9133 22 6 1.8720 -9.3797 4.6676 23 6 2.2916 -8.0930 4.4002 24 16 3.1787 -5.1290 3.5851 25 6 4.2872 -2.0173 -0.9238 26 6 4.2949 -0.4885 -0.9993 27 1 -0.4849 0.8401 0.0004 28 1 3.6561 -0.2606 2.0401 29 1 5.1551 -1.0439 1.4852 30 1 4.8760 -3.1856 6.1113 31 1 4.2784 -5.4780 7.0056 32 1 3.6785 -7.3634 7.4112 33 1 2.9116 -9.6550 7.8691 34 1 1.7641 -10.9462 6.1177 35 1 1.3674 -9.9516 3.9029 36 1 2.1164 -7.6577 3.4276 37 1 5.2000 -2.5095 -0.5882 38 1 3.7128 -2.5554 -1.6779 39 1 3.7254 -0.0215 -1.8028 40 1 5.2125 0.0255 -0.7131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327055281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = -15.394345 kcal Electronic energy + Delta-G solvation = -23780.045830 eV Core-core repulsion = 20230.745013 eV Total energy + Delta-G solvation = -3549.300817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56866 -40.23046 -39.06521 -38.23872 -37.10551 -34.29060 -33.32296 -31.91215 -30.26690 -28.76478 -27.45023 -26.14030 -23.93094 -23.42549 -22.97683 -22.69307 -21.12498 -19.90763 -19.71995 -18.73455 -18.00884 -17.63312 -17.26496 -17.05763 -16.70683 -16.18055 -15.68859 -15.63012 -15.13393 -14.89551 -14.73949 -14.47310 -14.32018 -14.12848 -13.95088 -13.81493 -13.34404 -13.31086 -13.09307 -12.87529 -12.43940 -12.29386 -12.11851 -12.07560 -11.87331 -11.79289 -11.65862 -11.50957 -11.03173 -10.76639 -10.62495 -10.42572 -9.91124 -9.73828 -9.05613 -8.33337 -6.40613 -1.06431 0.27401 0.38100 0.46402 0.78054 1.27409 1.30789 1.34985 1.45869 1.61725 1.85010 2.32739 2.90652 2.99029 3.13282 3.44622 3.71995 3.92714 3.94370 4.03212 4.17073 4.18887 4.23791 4.24635 4.31732 4.35810 4.52852 4.54800 4.60297 4.78784 4.79422 4.93815 4.96801 5.05086 5.09452 5.14786 5.24255 5.41377 5.43465 5.52015 5.53388 5.58149 5.62572 6.02068 6.26310 6.59846 6.68182 7.28088 8.82308 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.002824 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.942870 B = 9911.645477 C =10458.231017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.021 3.979 3 Si 0.933 3.067 4 H -0.260 1.260 5 H -0.297 1.297 6 H -0.236 1.236 7 C -0.483 4.483 8 H 0.033 0.967 9 C -0.039 4.039 10 C 0.113 3.887 11 O -0.339 6.339 12 C 0.527 3.473 13 O -0.534 6.534 14 C -0.287 4.287 15 C -0.030 4.030 16 C -0.144 4.144 17 C -0.116 4.116 18 C -0.047 4.047 19 C -0.097 4.097 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.126 4.126 24 S 0.206 5.794 25 C -0.156 4.156 26 C -0.175 4.175 27 H 0.266 0.734 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.189 0.811 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 -19.355 14.466 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.158 1.158 7 C -0.520 4.520 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.039 3.961 11 O -0.254 6.254 12 C 0.374 3.626 13 O -0.427 6.427 14 C -0.406 4.406 15 C -0.064 4.064 16 C -0.173 4.173 17 C -0.236 4.236 18 C -0.049 4.049 19 C -0.117 4.117 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.141 4.141 23 C -0.146 4.146 24 S 0.478 5.522 25 C -0.192 4.192 26 C -0.212 4.212 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.183 0.817 31 H 0.206 0.794 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.826 -19.263 13.072 24.897 hybrid contribution 0.268 1.779 0.853 1.991 sum 9.094 -17.484 13.925 24.131 Atomic orbital electron populations 1.70047 1.08237 1.28098 1.52047 1.25845 0.95319 1.02850 0.93696 0.85968 0.80369 0.78686 0.79288 1.18522 1.22435 1.15840 1.20335 0.89009 0.92877 1.49822 0.94869 1.19213 0.92897 1.05377 0.86503 1.22489 0.98016 0.83717 0.91889 1.86239 1.67277 1.44619 1.27298 1.20217 0.75703 0.86312 0.80411 1.90802 1.39839 1.42352 1.69748 1.23446 1.18147 0.98290 1.00669 1.20783 0.95995 0.98112 0.91482 1.20637 1.02206 0.91943 1.02512 1.24253 1.03510 0.98251 0.97590 1.18195 1.00997 0.89698 0.96025 1.21532 0.99005 0.96116 0.95076 1.21500 0.97646 0.93808 1.00735 1.21696 0.97352 1.01140 0.92749 1.21361 0.99754 0.94488 0.98495 1.21446 0.98685 0.95827 0.98595 1.84631 1.52470 1.02879 1.12213 1.22892 1.01363 0.92906 1.02087 1.23091 1.01498 0.95754 1.00819 0.92463 0.93697 0.91279 0.81651 0.79438 0.83319 0.82655 0.83116 0.83926 0.86570 0.87950 0.89528 0.89410 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.02 1.22 5.47 84.65 0.46 1.68 16 3 Si 0.93 44.76 24.94 68.60 1.71 46.47 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.24 -10.36 5.69 99.48 0.57 -9.79 16 7 C -0.48 -28.08 9.36 25.60 0.24 -27.84 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C -0.04 -1.83 1.03 -52.93 -0.05 -1.89 16 10 C 0.11 5.11 4.83 71.98 0.35 5.45 16 11 O -0.34 -15.35 9.88 -58.39 -0.58 -15.93 16 12 C 0.53 21.49 7.90 69.92 0.55 22.04 16 13 O -0.53 -23.10 16.58 19.36 0.32 -22.78 16 14 C -0.29 -9.47 6.43 24.02 0.15 -9.32 16 15 C -0.03 -0.76 9.88 21.58 0.21 -0.54 16 16 C -0.14 -2.85 9.66 21.52 0.21 -2.64 16 17 C -0.12 -2.64 6.41 24.39 0.16 -2.48 16 18 C -0.05 -0.92 5.87 -20.10 -0.12 -1.04 16 19 C -0.10 -1.35 9.55 22.53 0.22 -1.14 16 20 C -0.12 -1.29 10.03 22.23 0.22 -1.07 16 21 C -0.11 -1.26 10.04 22.33 0.22 -1.03 16 22 C -0.12 -1.82 10.03 22.23 0.22 -1.59 16 23 C -0.13 -2.45 9.60 22.53 0.22 -2.23 16 24 S 0.21 6.03 22.03 -56.49 -1.24 4.78 16 25 C -0.16 -6.07 9.96 30.62 0.30 -5.77 16 26 C -0.17 -6.90 7.32 30.62 0.22 -6.68 16 27 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 28 H 0.04 2.17 7.06 -2.39 -0.02 2.15 16 29 H 0.07 2.76 8.03 -2.39 -0.02 2.74 16 30 H 0.17 3.72 8.04 -2.91 -0.02 3.70 16 31 H 0.19 2.16 6.91 -2.91 -0.02 2.14 16 32 H 0.15 1.34 6.76 -2.91 -0.02 1.32 16 33 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.12 2.37 7.27 -2.92 -0.02 2.35 16 37 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.09 3.58 7.13 -2.39 -0.02 3.56 16 40 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 Total: -1.00 -74.27 356.84 5.22 -69.05 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.92 Total: 14.08 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.79 Total: -36.08 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.30 Total: -59.59 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.26 Total: -38.70 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.71 Total: 46.47 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -1.24 Total: 4.78 kcal Total: -74.27 5.22 -69.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327055281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.654 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds