Wall clock time and date at job start Tue Mar 31 2020 15:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47377 * 269.99902 * 3 2 1 5 5 H 1.48501 * 109.47378 * 30.00140 * 3 2 1 6 6 H 1.48503 * 109.47179 * 149.99967 * 3 2 1 7 7 C 1.37878 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99655 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00198 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47511 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47567 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00243 * 179.97438 * 11 10 9 13 13 O 1.21547 * 119.99671 * 0.02562 * 12 11 10 14 14 C 1.47880 * 120.00007 * 180.02562 * 12 11 10 15 15 C 1.39904 * 125.69269 * 180.02562 * 14 12 11 16 16 C 1.38580 * 107.58928 * 179.97438 * 15 14 12 17 17 N 1.34117 * 132.33740 * 180.02562 * 16 15 14 18 18 C 1.31131 * 120.84307 * 179.97438 * 17 16 15 19 19 C 1.40349 * 120.29389 * 359.75545 * 18 17 16 20 20 C 1.35448 * 119.46259 * 0.49598 * 19 18 17 21 21 C 1.50703 * 120.42746 * 179.78451 * 20 19 18 22 22 F 1.39905 * 109.47157 * 269.71852 * 21 20 19 23 23 F 1.39900 * 109.47159 * 149.72153 * 21 20 19 24 24 F 1.39897 * 109.47274 * 29.71844 * 21 20 19 25 25 N 1.36669 * 119.14593 * 359.50915 * 20 19 18 26 26 N 1.32378 * 125.69232 * 359.97187 * 14 12 11 27 27 H 0.97005 * 120.00228 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47219 * 59.99975 * 9 7 2 29 29 H 1.09008 * 109.46774 * 300.00175 * 9 7 2 30 30 H 1.09010 * 109.46689 * 59.99562 * 10 9 7 31 31 H 1.09001 * 109.46895 * 300.00426 * 10 9 7 32 32 H 0.97004 * 120.00206 * 0.02562 * 11 10 9 33 33 H 1.07995 * 126.20050 * 0.02562 * 15 14 12 34 34 H 1.08001 * 119.85209 * 179.97438 * 18 17 16 35 35 H 1.07998 * 120.26746 * 180.27191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 6 6.1604 -3.8037 0.0014 13 8 5.5526 -4.8563 0.0013 14 6 7.6392 -3.8037 0.0019 15 6 8.4555 -4.9399 0.0018 16 6 9.7727 -4.5093 0.0018 17 7 10.9393 -5.1709 0.0013 18 6 12.0795 -4.5232 0.0010 19 6 12.0965 -3.1198 -0.0041 20 6 10.9254 -2.4393 0.0016 21 6 10.9183 -0.9323 0.0012 22 9 10.9163 -0.4656 1.3201 23 9 9.7737 -0.4715 -0.6582 24 9 12.0583 -0.4607 -0.6585 25 7 9.7502 -3.1369 0.0020 26 7 8.4115 -2.7285 0.0015 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8751 -0.6803 -0.8889 30 1 3.6585 -3.1502 -0.8893 31 1 3.6578 -3.1506 0.8907 32 1 5.9715 -1.7965 0.0014 33 1 8.1199 -5.9664 0.0010 34 1 13.0096 -5.0721 0.0010 35 1 13.0358 -2.5868 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338918978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:19 Heat of formation + Delta-G solvation = -59.290255 kcal Electronic energy + Delta-G solvation = -27013.227041 eV Core-core repulsion = 22406.165551 eV Total energy + Delta-G solvation = -4607.061490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.83540 -48.38596 -48.22882 -42.94904 -39.69248 -38.28546 -35.27407 -35.09198 -32.90219 -31.98475 -30.17749 -29.91107 -27.91405 -25.97783 -24.31611 -24.12649 -22.40856 -20.84893 -20.33730 -19.68602 -19.21523 -19.01021 -18.16869 -18.12318 -16.90254 -16.72099 -16.09528 -15.98861 -15.33681 -15.20263 -15.10039 -15.03533 -14.69455 -14.60998 -14.36433 -14.33989 -14.18558 -13.89427 -13.57006 -13.45732 -13.12907 -13.03267 -12.60592 -12.04043 -11.86182 -11.51491 -11.23612 -10.65832 -10.48896 -10.42409 -10.13509 -10.00931 -9.84549 -9.34183 -8.74707 -8.62050 -8.57931 -6.11280 -4.11690 -0.54229 0.10273 1.06126 1.42547 1.62088 2.61160 2.74746 2.95668 3.14639 3.26735 3.28592 3.34635 3.36504 3.48934 3.58134 3.68338 4.07825 4.18898 4.31530 4.38465 4.69065 4.87230 5.10572 5.21863 5.33862 5.60994 5.83020 6.03098 6.14539 6.50643 6.53538 6.62897 6.84805 7.09455 7.20657 7.64204 7.71473 8.25585 8.43585 8.92584 9.48835 11.01581 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.003161 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.758109 B = 8855.304225 C =10533.961792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.128 3.872 11 N -0.703 5.703 12 C 0.589 3.411 13 O -0.519 6.519 14 C 0.083 3.917 15 C -0.177 4.177 16 C 0.242 3.758 17 N -0.423 5.423 18 C 0.173 3.827 19 C -0.151 4.151 20 C 0.091 3.909 21 C 0.520 3.480 22 F -0.159 7.159 23 F -0.149 7.149 24 F -0.160 7.160 25 N -0.296 5.296 26 N -0.256 5.256 27 H 0.265 0.735 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.405 0.595 33 H 0.182 0.818 34 H 0.196 0.804 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.233 -5.142 -0.013 32.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.006 3.994 11 N -0.353 5.353 12 C 0.370 3.630 13 O -0.394 6.394 14 C -0.077 4.077 15 C -0.208 4.208 16 C 0.018 3.982 17 N -0.132 5.132 18 C -0.014 4.014 19 C -0.176 4.176 20 C -0.026 4.026 21 C 0.464 3.536 22 F -0.140 7.140 23 F -0.130 7.130 24 F -0.141 7.141 25 N -0.071 5.071 26 N -0.086 5.086 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.239 0.761 33 H 0.199 0.801 34 H 0.213 0.787 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 31.137 -5.400 -0.012 31.602 hybrid contribution 0.794 1.697 -0.014 1.874 sum 31.931 -3.703 -0.026 32.145 Atomic orbital electron populations 1.69897 1.06282 1.27091 1.50324 1.24981 0.94754 0.99131 0.94305 0.86777 0.80338 0.83561 0.78596 1.20169 1.21230 1.18997 1.20888 0.88471 0.94962 1.51837 0.90487 1.19817 0.98090 0.91069 0.97124 1.21686 0.74754 1.00719 1.02210 1.46287 1.09660 1.07607 1.71702 1.16808 0.82751 0.85053 0.78371 1.90832 1.67314 1.31153 1.50056 1.22542 0.95766 0.90979 0.98385 1.21139 0.86237 1.00866 1.12523 1.20547 0.94854 0.79137 1.03660 1.68220 0.96294 1.37063 1.11672 1.23534 0.96836 0.90393 0.90603 1.21930 0.97233 0.96942 1.01502 1.20482 0.85205 0.92156 1.04741 1.17651 0.75135 0.85608 0.75201 1.93313 1.96127 1.89619 1.34988 1.93363 1.49373 1.89783 1.80456 1.93263 1.50564 1.89411 1.80892 1.46783 1.05297 1.07305 1.47709 1.78391 0.82111 1.20355 1.27772 0.92517 0.95805 0.96242 0.91258 0.91233 0.76068 0.80055 0.78707 0.80058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.60 5.61 -4.05 -0.02 2.57 16 11 N -0.70 -12.28 5.55 -61.24 -0.34 -12.62 16 12 C 0.59 10.17 7.83 -12.31 -0.10 10.08 16 13 O -0.52 -10.27 16.88 5.32 0.09 -10.18 16 14 C 0.08 1.24 7.05 -83.06 -0.59 0.66 16 15 C -0.18 -2.31 10.65 -38.83 -0.41 -2.73 16 16 C 0.24 2.84 7.90 -155.42 -1.23 1.61 16 17 N -0.42 -3.81 10.48 -12.22 -0.13 -3.94 16 18 C 0.17 0.79 11.27 -17.06 -0.19 0.60 16 19 C -0.15 -0.68 9.41 -39.78 -0.37 -1.06 16 20 C 0.09 0.79 6.35 -81.43 -0.52 0.27 16 21 C 0.52 4.62 3.43 36.01 0.12 4.75 16 22 F -0.16 -1.51 17.30 2.25 0.04 -1.47 16 23 F -0.15 -1.73 16.10 2.25 0.04 -1.69 16 24 F -0.16 -1.11 16.46 2.25 0.04 -1.07 16 25 N -0.30 -3.54 3.85 -8.49 -0.03 -3.58 16 26 N -0.26 -3.67 11.15 33.23 0.37 -3.30 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 29 H 0.02 0.44 7.57 -51.92 -0.39 0.04 16 30 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.40 6.48 8.16 -40.82 -0.33 6.15 16 33 H 0.18 2.14 8.06 -52.49 -0.42 1.71 16 34 H 0.20 -0.05 8.06 -52.49 -0.42 -0.47 16 35 H 0.18 0.09 7.59 -52.49 -0.40 -0.30 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -34.28 327.98 -5.51 -39.79 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.78 Total: 0.05 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -3.85 Total: 3.05 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.64 Total: -50.04 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.11 Total: -4.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.28 -5.51 -39.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338918978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.498 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds