Wall clock time and date at job start Tue Mar 31 2020 15:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47377 * 269.99902 * 3 2 1 5 5 H 1.48501 * 109.47378 * 30.00140 * 3 2 1 6 6 H 1.48503 * 109.47179 * 149.99967 * 3 2 1 7 7 C 1.37878 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99655 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00198 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47511 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47567 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00243 * 179.97438 * 11 10 9 13 13 O 1.21547 * 119.99671 * 0.02562 * 12 11 10 14 14 C 1.47880 * 120.00007 * 180.02562 * 12 11 10 15 15 C 1.39904 * 125.69269 * 180.02562 * 14 12 11 16 16 C 1.38580 * 107.58928 * 179.97438 * 15 14 12 17 17 N 1.34117 * 132.33740 * 180.02562 * 16 15 14 18 18 C 1.31131 * 120.84307 * 179.97438 * 17 16 15 19 19 C 1.40349 * 120.29389 * 359.75545 * 18 17 16 20 20 C 1.35448 * 119.46259 * 0.49598 * 19 18 17 21 21 C 1.50703 * 120.42746 * 179.78451 * 20 19 18 22 22 F 1.39905 * 109.47157 * 269.71852 * 21 20 19 23 23 F 1.39900 * 109.47159 * 149.72153 * 21 20 19 24 24 F 1.39897 * 109.47274 * 29.71844 * 21 20 19 25 25 N 1.36669 * 119.14593 * 359.50915 * 20 19 18 26 26 N 1.32378 * 125.69232 * 359.97187 * 14 12 11 27 27 H 0.97005 * 120.00228 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47219 * 59.99975 * 9 7 2 29 29 H 1.09008 * 109.46774 * 300.00175 * 9 7 2 30 30 H 1.09010 * 109.46689 * 59.99562 * 10 9 7 31 31 H 1.09001 * 109.46895 * 300.00426 * 10 9 7 32 32 H 0.97004 * 120.00206 * 0.02562 * 11 10 9 33 33 H 1.07995 * 126.20050 * 0.02562 * 15 14 12 34 34 H 1.08001 * 119.85209 * 179.97438 * 18 17 16 35 35 H 1.07998 * 120.26746 * 180.27191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 6 6.1604 -3.8037 0.0014 13 8 5.5526 -4.8563 0.0013 14 6 7.6392 -3.8037 0.0019 15 6 8.4555 -4.9399 0.0018 16 6 9.7727 -4.5093 0.0018 17 7 10.9393 -5.1709 0.0013 18 6 12.0795 -4.5232 0.0010 19 6 12.0965 -3.1198 -0.0041 20 6 10.9254 -2.4393 0.0016 21 6 10.9183 -0.9323 0.0012 22 9 10.9163 -0.4656 1.3201 23 9 9.7737 -0.4715 -0.6582 24 9 12.0583 -0.4607 -0.6585 25 7 9.7502 -3.1369 0.0020 26 7 8.4115 -2.7285 0.0015 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8751 -0.6803 -0.8889 30 1 3.6585 -3.1502 -0.8893 31 1 3.6578 -3.1506 0.8907 32 1 5.9715 -1.7965 0.0014 33 1 8.1199 -5.9664 0.0010 34 1 13.0096 -5.0721 0.0010 35 1 13.0358 -2.5868 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338918978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:18 Heat of formation + Delta-G solvation = -84.181632 kcal Electronic energy + Delta-G solvation = -27014.306412 eV Core-core repulsion = 22406.165551 eV Total energy + Delta-G solvation = -4608.140861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.50181 -49.00813 -48.96866 -43.73748 -40.94371 -39.17302 -36.80772 -35.88868 -34.88310 -32.98740 -31.86271 -30.74778 -28.58060 -27.52601 -25.49411 -24.94032 -23.38105 -22.63336 -21.54249 -20.40589 -19.88818 -19.70517 -19.27320 -18.97318 -18.76241 -17.56637 -17.03299 -16.92343 -16.58462 -16.43668 -16.22172 -15.81297 -15.75561 -15.41699 -15.35008 -15.12944 -15.09894 -15.07677 -14.98551 -14.61152 -14.37061 -13.87992 -13.74256 -13.41247 -13.11302 -12.78104 -12.72550 -12.30603 -12.22459 -11.80647 -11.61560 -11.42255 -11.28504 -10.94986 -10.80933 -10.23980 -9.45387 -8.31976 -6.38741 -1.14267 -0.59529 0.33759 0.41007 0.94761 1.37101 1.38707 1.50088 1.82897 1.89938 2.09322 2.10984 2.34410 2.52317 2.64366 2.92496 2.94115 3.02978 3.35369 3.61476 3.77065 3.93280 4.15314 4.26520 4.32863 4.37730 4.70485 4.75108 4.90607 4.97773 4.99361 5.29685 5.35006 5.57448 5.69837 6.18859 6.23568 6.35189 6.68302 6.89692 7.25724 8.84523 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.003161 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.758109 B = 8855.304225 C =10533.961792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.036 0.964 9 C -0.015 4.015 10 C 0.142 3.858 11 N -0.699 5.699 12 C 0.595 3.405 13 O -0.552 6.552 14 C 0.065 3.935 15 C -0.201 4.201 16 C 0.250 3.750 17 N -0.449 5.449 18 C 0.201 3.799 19 C -0.106 4.106 20 C 0.050 3.950 21 C 0.523 3.477 22 F -0.165 7.165 23 F -0.170 7.170 24 F -0.146 7.146 25 N -0.298 5.298 26 N -0.282 5.282 27 H 0.269 0.731 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.414 0.586 33 H 0.182 0.818 34 H 0.256 0.744 35 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.748 -4.300 -0.034 37.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.053 4.053 10 C 0.020 3.980 11 N -0.349 5.349 12 C 0.378 3.622 13 O -0.429 6.429 14 C -0.093 4.093 15 C -0.233 4.233 16 C 0.024 3.976 17 N -0.160 5.160 18 C 0.015 3.985 19 C -0.130 4.130 20 C -0.065 4.065 21 C 0.467 3.533 22 F -0.146 7.146 23 F -0.151 7.151 24 F -0.127 7.127 25 N -0.073 5.073 26 N -0.113 5.113 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.250 0.750 33 H 0.199 0.801 34 H 0.272 0.728 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 36.699 -4.542 -0.033 36.979 hybrid contribution -0.592 1.341 -0.012 1.466 sum 36.107 -3.200 -0.045 36.248 Atomic orbital electron populations 1.70055 1.08374 1.28413 1.51893 1.25983 0.95638 1.03545 0.93743 0.85627 0.79580 0.77923 0.79335 1.19014 1.20928 1.16626 1.21203 0.91154 0.93629 1.51515 0.94583 1.19672 0.94818 0.92799 0.97987 1.21251 0.76642 0.98931 1.01210 1.46035 1.08295 1.08414 1.72127 1.17053 0.84024 0.84168 0.76990 1.90798 1.68572 1.32124 1.51382 1.21941 0.94146 0.92222 1.01027 1.21149 0.87159 1.00521 1.14440 1.20613 0.95416 0.79096 1.02456 1.68379 0.96484 1.37284 1.13839 1.24719 0.97286 0.90710 0.85777 1.22760 0.97463 0.97142 0.95612 1.20941 0.85306 0.92199 1.08016 1.17662 0.74874 0.85914 0.74826 1.93301 1.96137 1.89787 1.35424 1.93318 1.50805 1.90109 1.80887 1.93288 1.49516 1.89326 1.80562 1.46835 1.05253 1.07803 1.47369 1.78245 0.83500 1.20238 1.29344 0.92253 0.94737 0.94875 0.92393 0.92390 0.75007 0.80066 0.72813 0.74983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.01 0.49 5.47 84.66 0.46 0.96 16 3 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.24 -10.19 6.54 99.48 0.65 -9.53 16 7 C -0.54 -31.04 9.66 25.60 0.25 -30.79 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 9 C -0.01 -0.69 4.16 29.85 0.12 -0.57 16 10 C 0.14 6.01 5.61 86.38 0.48 6.50 16 11 N -0.70 -25.11 5.55 -465.94 -2.59 -27.70 16 12 C 0.59 21.52 7.83 86.80 0.68 22.20 16 13 O -0.55 -23.09 16.88 -3.86 -0.07 -23.15 16 14 C 0.06 2.00 7.05 42.02 0.30 2.30 16 15 C -0.20 -5.42 10.65 22.76 0.24 -5.18 16 16 C 0.25 5.54 7.90 133.00 1.05 6.60 16 17 N -0.45 -6.57 10.48 -192.58 -2.02 -8.59 16 18 C 0.20 0.62 11.27 85.31 0.96 1.58 16 19 C -0.11 -0.34 9.41 22.14 0.21 -0.13 16 20 C 0.05 0.72 6.35 41.16 0.26 0.98 16 21 C 0.52 8.09 3.43 71.24 0.24 8.33 16 22 F -0.17 -2.82 17.30 44.97 0.78 -2.04 16 23 F -0.17 -3.82 16.10 44.97 0.72 -3.09 16 24 F -0.15 -1.51 16.46 44.97 0.74 -0.77 16 25 N -0.30 -6.73 3.85 -180.77 -0.70 -7.42 16 26 N -0.28 -8.15 11.15 -48.78 -0.54 -8.69 16 27 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 28 H 0.03 1.53 7.20 -2.39 -0.02 1.52 16 29 H 0.03 1.45 7.57 -2.38 -0.02 1.43 16 30 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.41 13.37 8.16 -92.71 -0.76 12.61 16 33 H 0.18 4.56 8.06 -2.91 -0.02 4.53 16 34 H 0.26 -2.28 8.06 -2.91 -0.02 -2.31 16 35 H 0.23 -1.62 7.59 -2.91 -0.02 -1.65 16 Total: -1.00 -80.75 327.98 4.15 -76.60 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.37 Total: 5.81 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.26 Total: 12.76 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -5.55 Total: -111.66 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 2.24 Total: -5.90 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -80.75 4.15 -76.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338918978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.584 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds