Wall clock time and date at job start Tue Mar 31 2020 15:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46741 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47144 * 29.99662 * 3 2 1 6 6 H 1.48499 * 109.47353 * 150.00160 * 3 2 1 7 7 C 1.37876 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 172.23191 * 7 2 1 9 9 C 1.50693 * 120.00214 * 352.22829 * 7 2 1 10 10 C 1.53002 * 115.55104 * 84.78707 * 9 7 2 11 11 S 1.81393 * 109.47058 * 65.19449 * 10 9 7 12 12 O 1.42107 * 110.54532 * 285.43714 * 11 10 9 13 13 O 1.42096 * 110.54603 * 62.19107 * 11 10 9 14 14 N 1.65601 * 104.44983 * 173.81620 * 11 10 9 15 15 C 1.46490 * 120.00173 * 64.99627 * 14 11 10 16 16 C 1.50705 * 109.47373 * 164.99892 * 15 14 11 17 17 C 1.35132 * 125.61322 * 89.99940 * 16 15 14 18 18 C 1.40362 * 107.11674 * 180.02562 * 17 16 15 19 19 C 1.36547 * 106.70628 * 0.02562 * 18 17 16 20 20 C 1.46659 * 125.98523 * 180.02562 * 19 18 17 21 21 N 1.34774 * 119.99446 * 179.97438 * 20 19 18 22 22 O 1.21688 * 120.00115 * 359.97438 * 20 19 18 23 23 O 1.33923 * 125.62066 * 269.69796 * 16 15 14 24 24 C 1.53007 * 117.50334 * 230.45751 * 9 7 2 25 25 C 1.53000 * 117.50006 * 299.11613 * 9 7 2 26 26 H 0.97000 * 120.00178 * 5.02633 * 1 2 3 27 27 H 1.08997 * 109.47088 * 305.19369 * 10 9 7 28 28 H 1.08996 * 109.47215 * 185.19786 * 10 9 7 29 29 H 0.97005 * 119.99742 * 245.00045 * 14 11 10 30 30 H 1.08997 * 109.47386 * 285.00269 * 15 14 11 31 31 H 1.09003 * 109.47367 * 45.00354 * 15 14 11 32 32 H 1.08004 * 126.44220 * 359.97438 * 17 16 15 33 33 H 1.08001 * 126.64891 * 180.02562 * 18 17 16 34 34 H 0.97002 * 120.00245 * 359.97438 * 21 20 19 35 35 H 0.97009 * 119.99702 * 179.97438 * 21 20 19 36 36 H 1.08997 * 117.50283 * 215.00513 * 24 9 7 37 37 H 1.09001 * 117.48963 * 0.02562 * 24 9 7 38 38 H 1.08997 * 117.49994 * 359.97438 * 25 9 7 39 39 H 1.09005 * 117.50051 * 144.97314 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0771 -1.1982 -0.1270 9 6 1.2615 -2.4932 0.1754 10 6 0.6670 -3.0915 -1.1012 11 16 2.0072 -3.5623 -2.2293 12 8 2.5779 -2.4100 -2.8342 13 8 2.8268 -4.5624 -1.6401 14 7 1.2439 -4.3417 -3.4752 15 6 0.3178 -3.6075 -4.3408 16 6 0.0489 -4.4124 -5.5862 17 6 -0.9419 -5.3185 -5.7388 18 6 -0.8343 -5.8329 -7.0404 19 6 0.2303 -5.2072 -7.6230 20 6 0.7191 -5.4292 -8.9878 21 7 1.7855 -4.7414 -9.4418 22 8 0.1618 -6.2343 -9.7103 23 8 0.7489 -4.3433 -6.7258 24 6 1.7805 -3.4660 1.2362 25 6 0.4827 -2.6910 1.4774 26 1 -0.4850 0.8368 -0.0736 27 1 0.0275 -2.3531 -1.5849 28 1 0.0777 -3.9730 -0.8491 29 1 1.4099 -5.2845 -3.6318 30 1 -0.6184 -3.4368 -3.8093 31 1 0.7594 -2.6496 -4.6157 32 1 -1.6776 -5.5956 -4.9983 33 1 -1.4703 -6.5791 -7.4932 34 1 2.2295 -4.0993 -8.8660 35 1 2.1091 -4.8885 -10.3444 36 1 1.6985 -4.5321 1.0247 37 1 2.6592 -3.1659 1.8071 38 1 0.5082 -1.8816 2.2070 39 1 -0.4534 -3.2469 1.4245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413295773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:28 Heat of formation + Delta-G solvation = -71.376631 kcal Electronic energy + Delta-G solvation = -25543.271517 eV Core-core repulsion = 21580.693863 eV Total energy + Delta-G solvation = -3962.577654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.01071 -39.49747 -36.82360 -36.40901 -35.62151 -35.14698 -34.18303 -33.24460 -32.09912 -30.34729 -28.26156 -26.38785 -25.51090 -23.01037 -21.91053 -21.26751 -20.54478 -19.84880 -18.85762 -18.71080 -17.41928 -17.17897 -16.90514 -16.48923 -16.10290 -15.29950 -15.14926 -14.79549 -14.69898 -14.54045 -14.29037 -14.03484 -13.79991 -13.39974 -13.26351 -13.19161 -12.41862 -12.02930 -11.88519 -11.52190 -11.38622 -11.27343 -11.08567 -10.98235 -10.83032 -10.64371 -10.51471 -10.32336 -10.19640 -10.17100 -9.84074 -9.47310 -9.01537 -8.91594 -8.61763 -8.16724 -6.19822 -4.30465 0.61254 0.97689 2.00869 2.28580 2.84967 3.15351 3.27111 3.32869 3.37289 3.38075 4.18776 4.32599 4.43147 4.61173 4.63583 4.88865 5.07178 5.07779 5.14301 5.16551 5.32982 5.48434 5.55774 5.58565 5.83266 5.90378 6.05686 6.18793 6.26219 6.30345 6.53747 6.54006 6.67238 6.91974 6.93930 7.02913 7.17821 7.34119 7.74041 7.75004 8.14310 8.75364 9.41167 10.87711 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003067 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.879029 B = 9126.506370 C = 9654.688263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.553 4.553 11 S 2.604 3.396 12 O -0.946 6.946 13 O -0.968 6.968 14 N -1.132 6.132 15 C 0.192 3.808 16 C 0.024 3.976 17 C -0.204 4.204 18 C -0.113 4.113 19 C -0.088 4.088 20 C 0.612 3.388 21 N -0.843 5.843 22 O -0.526 6.526 23 O -0.155 6.155 24 C -0.208 4.208 25 C -0.140 4.140 26 H 0.263 0.737 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.413 0.587 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.410 0.590 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -8.609 -12.219 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.122 4.122 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.687 4.687 11 S 2.702 3.298 12 O -0.936 6.936 13 O -0.959 6.959 14 N -0.888 5.888 15 C 0.066 3.934 16 C -0.030 4.030 17 C -0.224 4.224 18 C -0.133 4.133 19 C -0.141 4.141 20 C 0.397 3.603 21 N -0.406 5.406 22 O -0.404 6.404 23 O -0.050 6.050 24 C -0.245 4.245 25 C -0.179 4.179 26 H 0.073 0.927 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.246 0.754 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.239 0.761 35 H 0.241 0.759 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.158 -8.480 -12.502 15.260 hybrid contribution -0.170 0.666 -0.026 0.688 sum -2.328 -7.814 -12.528 14.947 Atomic orbital electron populations 1.69968 1.06025 1.27257 1.47723 1.24946 0.94811 0.99228 0.93259 0.86581 0.80154 0.82776 0.78684 1.20022 1.21065 1.19431 1.20528 0.93731 0.88582 1.52598 0.91328 1.18275 0.99101 0.94366 0.84258 1.29985 1.16339 1.08621 1.13709 1.05323 0.76551 0.73736 0.74192 1.93546 1.74814 1.50755 1.74491 1.93521 1.65228 1.59445 1.77666 1.56187 1.62113 1.22837 1.47710 1.19756 0.95538 0.94220 0.83925 1.22798 0.93083 1.00102 0.86998 1.21734 1.02130 1.00379 0.98197 1.21993 0.96826 1.00412 0.94103 1.21965 1.00659 0.99364 0.92064 1.16504 0.80077 0.80359 0.83316 1.43717 1.32598 1.44721 1.19578 1.90926 1.58158 1.35602 1.55732 1.84033 1.49700 1.50635 1.20661 1.23208 0.98727 0.96040 1.06570 1.22558 0.92584 1.01033 1.01767 0.92685 0.84706 0.87973 0.75395 0.87807 0.87809 0.81936 0.81986 0.76095 0.75932 0.90629 0.89494 0.89556 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.99 12.98 55.43 0.72 -22.27 16 2 C 0.08 2.17 5.38 -17.82 -0.10 2.07 16 3 Si 0.89 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.58 8.18 -34.44 -0.28 -13.86 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C 0.04 0.98 1.32 -155.66 -0.21 0.77 16 10 C -0.55 -10.57 5.93 37.16 0.22 -10.35 16 11 S 2.60 48.33 5.19 -107.50 -0.56 47.77 16 12 O -0.95 -20.99 17.17 -57.54 -0.99 -21.98 16 13 O -0.97 -20.05 18.08 -57.54 -1.04 -21.09 16 14 N -1.13 -15.04 5.88 -11.66 -0.07 -15.11 16 15 C 0.19 2.21 6.66 -5.20 -0.03 2.18 16 16 C 0.02 0.27 6.71 -35.41 -0.24 0.03 16 17 C -0.20 -1.97 10.77 -39.89 -0.43 -2.40 16 18 C -0.11 -1.16 10.62 -39.39 -0.42 -1.58 16 19 C -0.09 -0.99 7.13 -36.79 -0.26 -1.25 16 20 C 0.61 6.70 8.06 -12.86 -0.10 6.60 16 21 N -0.84 -6.10 8.87 30.26 0.27 -5.83 16 22 O -0.53 -7.28 17.70 5.20 0.09 -7.19 16 23 O -0.15 -1.79 10.40 5.01 0.05 -1.74 16 24 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 25 C -0.14 -3.04 9.49 -26.69 -0.25 -3.30 16 26 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 27 H 0.13 2.61 8.14 -51.93 -0.42 2.19 16 28 H 0.10 1.60 8.09 -51.93 -0.42 1.18 16 29 H 0.41 4.75 8.61 -34.47 -0.30 4.45 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.27 7.69 -51.93 -0.40 0.87 16 32 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.41 2.41 8.59 -40.82 -0.35 2.06 16 35 H 0.41 2.15 8.93 -40.82 -0.36 1.78 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -34.29 360.36 -8.24 -42.53 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.76 Total: 9.53 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -2.37 Total: -25.72 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.92 Total: -43.20 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -1.88 Total: -51.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 48.33 SS G_CDS: -0.56 Total: 47.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.29 -8.24 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413295773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.846 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds