Wall clock time and date at job start Tue Mar 31 2020 15:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46741 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47144 * 29.99662 * 3 2 1 6 6 H 1.48499 * 109.47353 * 150.00160 * 3 2 1 7 7 C 1.37876 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 172.23191 * 7 2 1 9 9 C 1.50693 * 120.00214 * 352.22829 * 7 2 1 10 10 C 1.53002 * 115.55104 * 84.78707 * 9 7 2 11 11 S 1.81393 * 109.47058 * 65.19449 * 10 9 7 12 12 O 1.42107 * 110.54532 * 285.43714 * 11 10 9 13 13 O 1.42096 * 110.54603 * 62.19107 * 11 10 9 14 14 N 1.65601 * 104.44983 * 173.81620 * 11 10 9 15 15 C 1.46490 * 120.00173 * 64.99627 * 14 11 10 16 16 C 1.50705 * 109.47373 * 164.99892 * 15 14 11 17 17 C 1.35132 * 125.61322 * 89.99940 * 16 15 14 18 18 C 1.40362 * 107.11674 * 180.02562 * 17 16 15 19 19 C 1.36547 * 106.70628 * 0.02562 * 18 17 16 20 20 C 1.46659 * 125.98523 * 180.02562 * 19 18 17 21 21 N 1.34774 * 119.99446 * 179.97438 * 20 19 18 22 22 O 1.21688 * 120.00115 * 359.97438 * 20 19 18 23 23 O 1.33923 * 125.62066 * 269.69796 * 16 15 14 24 24 C 1.53007 * 117.50334 * 230.45751 * 9 7 2 25 25 C 1.53000 * 117.50006 * 299.11613 * 9 7 2 26 26 H 0.97000 * 120.00178 * 5.02633 * 1 2 3 27 27 H 1.08997 * 109.47088 * 305.19369 * 10 9 7 28 28 H 1.08996 * 109.47215 * 185.19786 * 10 9 7 29 29 H 0.97005 * 119.99742 * 245.00045 * 14 11 10 30 30 H 1.08997 * 109.47386 * 285.00269 * 15 14 11 31 31 H 1.09003 * 109.47367 * 45.00354 * 15 14 11 32 32 H 1.08004 * 126.44220 * 359.97438 * 17 16 15 33 33 H 1.08001 * 126.64891 * 180.02562 * 18 17 16 34 34 H 0.97002 * 120.00245 * 359.97438 * 21 20 19 35 35 H 0.97009 * 119.99702 * 179.97438 * 21 20 19 36 36 H 1.08997 * 117.50283 * 215.00513 * 24 9 7 37 37 H 1.09001 * 117.48963 * 0.02562 * 24 9 7 38 38 H 1.08997 * 117.49994 * 359.97438 * 25 9 7 39 39 H 1.09005 * 117.50051 * 144.97314 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0771 -1.1982 -0.1270 9 6 1.2615 -2.4932 0.1754 10 6 0.6670 -3.0915 -1.1012 11 16 2.0072 -3.5623 -2.2293 12 8 2.5779 -2.4100 -2.8342 13 8 2.8268 -4.5624 -1.6401 14 7 1.2439 -4.3417 -3.4752 15 6 0.3178 -3.6075 -4.3408 16 6 0.0489 -4.4124 -5.5862 17 6 -0.9419 -5.3185 -5.7388 18 6 -0.8343 -5.8329 -7.0404 19 6 0.2303 -5.2072 -7.6230 20 6 0.7191 -5.4292 -8.9878 21 7 1.7855 -4.7414 -9.4418 22 8 0.1618 -6.2343 -9.7103 23 8 0.7489 -4.3433 -6.7258 24 6 1.7805 -3.4660 1.2362 25 6 0.4827 -2.6910 1.4774 26 1 -0.4850 0.8368 -0.0736 27 1 0.0275 -2.3531 -1.5849 28 1 0.0777 -3.9730 -0.8491 29 1 1.4099 -5.2845 -3.6318 30 1 -0.6184 -3.4368 -3.8093 31 1 0.7594 -2.6496 -4.6157 32 1 -1.6776 -5.5956 -4.9983 33 1 -1.4703 -6.5791 -7.4932 34 1 2.2295 -4.0993 -8.8660 35 1 2.1091 -4.8885 -10.3444 36 1 1.6985 -4.5321 1.0247 37 1 2.6592 -3.1659 1.8071 38 1 0.5082 -1.8816 2.2070 39 1 -0.4534 -3.2469 1.4245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413295773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:28 Heat of formation + Delta-G solvation = -99.278700 kcal Electronic energy + Delta-G solvation = -25544.481442 eV Core-core repulsion = 21580.693863 eV Total energy + Delta-G solvation = -3963.787578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.82150 -40.34618 -38.52888 -37.96728 -36.85789 -36.54308 -34.95160 -34.05289 -34.04765 -31.23804 -29.81735 -27.47194 -27.27761 -23.82249 -22.94859 -22.72841 -21.53969 -21.31545 -20.28979 -19.53543 -18.61907 -18.34109 -18.02837 -17.77055 -17.21745 -16.78358 -16.68495 -16.24583 -15.78937 -15.59116 -15.42991 -15.30305 -14.92981 -14.85458 -14.16921 -14.00203 -13.73776 -13.61804 -13.45797 -13.10084 -12.89533 -12.86853 -12.83757 -12.76608 -12.41081 -12.18089 -11.87897 -11.72540 -11.53846 -11.10710 -10.90915 -10.83942 -10.65622 -10.50619 -9.86667 -9.72899 -8.16746 -6.30502 -0.59889 -0.09579 1.20027 1.40993 1.43866 1.47075 1.51708 2.02541 2.10932 2.42122 2.44812 2.95739 3.10832 3.35142 3.42779 3.52049 3.86291 3.91231 3.97525 4.19630 4.33909 4.37114 4.54399 4.55176 4.62921 4.72025 4.75997 4.88007 4.89999 5.02646 5.26382 5.32048 5.51020 5.59382 5.63419 5.75317 5.80066 6.03727 6.22605 6.26457 6.75303 7.03387 7.41739 8.89945 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003067 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.879029 B = 9126.506370 C = 9654.688263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.047 3.953 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.011 3.989 10 C -0.550 4.550 11 S 2.623 3.377 12 O -0.990 6.990 13 O -0.993 6.993 14 N -1.114 6.114 15 C 0.185 3.815 16 C 0.009 3.991 17 C -0.187 4.187 18 C -0.117 4.117 19 C -0.101 4.101 20 C 0.609 3.391 21 N -0.824 5.824 22 O -0.562 6.562 23 O -0.165 6.165 24 C -0.199 4.199 25 C -0.138 4.138 26 H 0.266 0.734 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.424 0.576 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.191 0.809 33 H 0.174 0.826 34 H 0.418 0.582 35 H 0.420 0.580 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -9.560 -12.475 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.157 4.157 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.065 0.935 9 C 0.009 3.991 10 C -0.683 4.683 11 S 2.721 3.279 12 O -0.980 6.980 13 O -0.983 6.983 14 N -0.875 5.875 15 C 0.060 3.940 16 C -0.045 4.045 17 C -0.207 4.207 18 C -0.138 4.138 19 C -0.153 4.153 20 C 0.395 3.605 21 N -0.387 5.387 22 O -0.443 6.443 23 O -0.061 6.061 24 C -0.237 4.237 25 C -0.177 4.177 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.160 0.840 29 H 0.260 0.740 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.208 0.792 33 H 0.192 0.808 34 H 0.249 0.751 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.273 -9.412 -12.751 16.183 hybrid contribution 0.208 0.938 0.017 0.961 sum -3.065 -8.474 -12.734 15.599 Atomic orbital electron populations 1.69994 1.06403 1.27773 1.48265 1.25440 0.95590 1.01242 0.93390 0.85966 0.79316 0.80567 0.78490 1.20160 1.20020 1.19733 1.20705 0.93148 0.90729 1.52747 0.93467 1.18404 1.00254 0.94136 0.86291 1.29863 1.16508 1.10000 1.11951 1.04433 0.76310 0.72774 0.74358 1.93493 1.76163 1.52873 1.75485 1.93478 1.66468 1.59781 1.78608 1.55619 1.62161 1.23235 1.46525 1.20002 0.96174 0.93525 0.84331 1.22778 0.93932 1.01042 0.86754 1.22049 1.01647 0.98811 0.98210 1.22286 0.96606 1.00435 0.94476 1.22138 1.01255 0.99665 0.92282 1.16579 0.80512 0.80270 0.83186 1.43605 1.31281 1.43684 1.20178 1.90905 1.59491 1.37302 1.56558 1.84009 1.50162 1.50956 1.21021 1.23256 0.98134 0.97052 1.05210 1.22521 0.93908 1.00770 1.00469 0.92501 0.84975 0.84039 0.73998 0.84728 0.88991 0.79171 0.80839 0.75118 0.74683 0.88132 0.90278 0.91760 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.27 12.98 21.45 0.28 -45.99 16 2 C 0.05 2.45 5.38 84.65 0.46 2.90 16 3 Si 0.93 42.40 29.55 68.60 2.03 44.43 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -28.34 8.18 25.60 0.21 -28.13 16 8 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16 9 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 10 C -0.55 -19.88 5.93 71.98 0.43 -19.45 16 11 S 2.62 94.46 5.19 -56.49 -0.29 94.16 16 12 O -0.99 -44.20 17.17 -127.65 -2.19 -46.39 16 13 O -0.99 -39.98 18.08 -127.65 -2.31 -42.29 16 14 N -1.11 -27.30 5.88 -190.80 -1.12 -28.42 16 15 C 0.18 3.87 6.66 85.64 0.57 4.44 16 16 C 0.01 0.17 6.71 24.97 0.17 0.34 16 17 C -0.19 -3.05 10.77 22.07 0.24 -2.81 16 18 C -0.12 -2.19 10.62 22.39 0.24 -1.95 16 19 C -0.10 -2.14 7.13 24.07 0.17 -1.96 16 20 C 0.61 12.85 8.06 86.44 0.70 13.55 16 21 N -0.82 -11.06 8.87 -176.41 -1.56 -12.63 16 22 O -0.56 -15.30 17.70 -4.31 -0.08 -15.37 16 23 O -0.17 -3.61 10.40 -4.98 -0.05 -3.66 16 24 C -0.20 -8.07 9.96 30.62 0.30 -7.77 16 25 C -0.14 -5.77 9.49 30.62 0.29 -5.48 16 26 H 0.27 13.19 8.32 -92.71 -0.77 12.42 16 27 H 0.13 4.87 8.14 -2.39 -0.02 4.86 16 28 H 0.14 3.89 8.09 -2.39 -0.02 3.87 16 29 H 0.42 8.72 8.61 -96.74 -0.83 7.89 16 30 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.17 7.69 -2.39 -0.02 2.15 16 32 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.42 4.44 8.59 -92.71 -0.80 3.64 16 35 H 0.42 3.93 8.93 -92.70 -0.83 3.10 16 36 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -73.76 360.36 -2.93 -76.70 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -1.33 Total: 25.36 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 3.70 Total: -45.89 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.41 Total: -87.05 kcal Atomic # 8 Polarization: -103.08 SS G_CDS: -4.63 Total: -107.71 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 94.46 SS G_CDS: -0.29 Total: 94.16 kcal Total: -73.76 -2.93 -76.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413295773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.584 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds