Wall clock time and date at job start Tue Mar 31 2020 16:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 H 1.09000 * 109.47144 * 55.21563 * 3 2 1 5 5 C 1.50704 * 109.46840 * 175.21784 * 3 2 1 6 6 H 1.08001 * 120.00025 * 120.00019 * 5 3 2 7 7 C 1.37871 * 119.99813 * 299.72148 * 5 3 2 8 8 N 1.31513 * 120.00188 * 0.28018 * 7 5 3 9 9 Si 1.86806 * 119.99974 * 180.27758 * 7 5 3 10 10 H 1.48499 * 109.46789 * 89.99932 * 9 7 5 11 11 H 1.48500 * 109.47295 * 209.99956 * 9 7 5 12 12 H 1.48505 * 109.47004 * 330.00448 * 9 7 5 13 13 N 1.46499 * 109.46799 * 295.21345 * 3 2 1 14 14 S 1.65600 * 119.99771 * 118.43516 * 13 3 2 15 15 O 1.42096 * 106.40304 * 177.12214 * 14 13 3 16 16 O 1.42104 * 106.40396 * 310.04365 * 14 13 3 17 17 C 1.76206 * 107.21903 * 63.57908 * 14 13 3 18 18 C 1.38628 * 120.47241 * 242.75882 * 17 14 13 19 19 C 1.38582 * 118.48898 * 180.02562 * 18 17 14 20 20 C 1.38633 * 119.35822 * 0.02562 * 19 18 17 21 21 N 1.31474 * 120.90316 * 0.02562 * 20 19 18 22 22 C 1.32783 * 121.64310 * 359.66334 * 21 20 19 23 23 C 1.48065 * 119.72799 * 180.33332 * 22 21 20 24 24 O 1.21432 * 120.00117 * 174.41528 * 23 22 21 25 25 O 1.34681 * 120.00142 * 354.41327 * 23 22 21 26 26 C 1.45199 * 117.00121 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.46838 * 63.90002 * 1 2 3 28 28 H 1.08998 * 109.47046 * 183.89405 * 1 2 3 29 29 H 1.08995 * 109.47221 * 303.89927 * 1 2 3 30 30 H 1.09000 * 109.47445 * 239.99480 * 2 1 3 31 31 H 1.09003 * 109.46752 * 119.99632 * 2 1 3 32 32 H 0.97005 * 120.00202 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00389 * 298.43670 * 13 3 2 34 34 H 1.07999 * 120.75574 * 359.97438 * 18 17 14 35 35 H 1.07994 * 120.32150 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.54637 * 180.02562 * 20 19 18 37 37 H 1.08992 * 109.47297 * 180.02562 * 26 25 23 38 38 H 1.08997 * 109.47020 * 300.00655 * 26 25 23 39 39 H 1.09009 * 109.46639 * 60.00018 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9805 0.8440 5 6 3.5424 1.4441 0.1185 6 1 4.1449 1.8896 -0.6593 7 6 4.1474 0.8819 1.2224 8 7 3.4137 0.3393 2.1695 9 14 6.0094 0.8907 1.3730 10 1 6.4434 2.1261 2.0733 11 1 6.4490 -0.2978 2.1473 12 1 6.6157 0.8508 0.0180 13 7 1.6480 2.0990 -1.2496 14 16 0.6568 3.4250 -1.2127 15 8 0.5212 3.8622 -2.5579 16 8 -0.4506 3.0756 -0.3937 17 6 1.5233 4.7004 -0.3599 18 6 1.0299 5.2107 0.8309 19 6 1.7445 6.2135 1.4668 20 6 2.9220 6.6742 0.8984 21 7 3.3670 6.1732 -0.2328 22 6 2.7161 5.2075 -0.8708 23 6 3.2596 4.6691 -2.1385 24 8 2.7251 3.7189 -2.6732 25 8 4.3468 5.2333 -2.6985 26 6 4.8247 4.6529 -3.9407 27 1 -0.3633 0.4521 -0.9229 28 1 -0.3633 -1.0253 0.0698 29 1 -0.3633 0.5731 0.8529 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8393 -0.0559 2.9464 33 1 1.9690 1.7569 -2.0986 34 1 0.1092 4.8359 1.2529 35 1 1.3874 6.6321 2.3961 36 1 3.4815 7.4553 1.3916 37 1 5.7032 5.1998 -4.2830 38 1 5.0887 3.6084 -3.7758 39 1 4.0408 4.7147 -4.6957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414243017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:50 Heat of formation + Delta-G solvation = -105.577572 kcal Electronic energy + Delta-G solvation = -27881.424100 eV Core-core repulsion = 23917.363382 eV Total energy + Delta-G solvation = -3964.060718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79754 -39.50225 -36.88140 -36.29452 -35.61691 -35.19461 -32.79631 -32.19048 -31.81395 -30.43086 -27.83891 -26.61331 -24.86635 -24.03902 -22.97671 -21.41817 -20.04047 -19.03647 -18.37386 -17.66361 -17.04926 -16.75890 -16.43114 -16.34176 -15.94808 -15.30720 -15.11346 -14.52415 -14.13636 -13.93771 -13.66581 -13.35088 -13.12411 -12.94826 -12.89490 -12.67205 -12.01838 -11.69280 -11.64828 -11.42118 -11.37639 -11.22195 -11.14187 -10.91043 -10.80563 -10.65537 -10.48252 -10.28930 -10.17493 -9.92552 -9.67112 -9.64691 -9.49115 -9.43702 -8.51619 -8.12024 -6.13854 -4.22311 0.24155 0.92984 1.14064 2.46961 2.58445 3.21185 3.28701 3.31811 3.58663 3.77244 4.07386 4.31789 4.33399 4.57841 4.75162 4.82692 5.13722 5.15612 5.20805 5.22874 5.33794 5.44473 5.64092 5.75354 5.85586 6.27287 6.32832 6.38384 6.39401 6.46149 6.71846 6.96082 7.14504 7.29117 7.43505 7.63107 7.70505 7.78099 8.00113 8.09320 8.33999 8.82332 9.44600 10.90171 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.007284 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.743584 B = 3843.369492 C = 4551.580060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.278 3.722 4 H 0.042 0.958 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.273 1.273 13 N -1.079 6.079 14 S 2.702 3.298 15 O -0.962 6.962 16 O -0.967 6.967 17 C -0.663 4.663 18 C 0.014 3.986 19 C -0.163 4.163 20 C 0.137 3.863 21 N -0.450 5.450 22 C 0.201 3.799 23 C 0.512 3.488 24 O -0.460 6.460 25 O -0.331 6.331 26 C 0.032 3.968 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.264 0.736 33 H 0.415 0.585 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 10.352 -3.475 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.060 0.940 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.843 5.843 14 S 2.785 3.215 15 O -0.952 6.952 16 O -0.957 6.957 17 C -0.746 4.746 18 C -0.012 4.012 19 C -0.184 4.184 20 C -0.022 4.022 21 N -0.162 5.162 22 C 0.062 3.938 23 C 0.353 3.647 24 O -0.345 6.345 25 O -0.246 6.246 26 C -0.061 4.061 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.251 0.749 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.188 0.812 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.205 10.445 -4.031 11.261 hybrid contribution 1.246 -0.198 0.632 1.411 sum 0.040 10.247 -3.399 10.796 Atomic orbital electron populations 1.21817 0.98504 0.99164 1.00878 1.21879 0.92429 0.99387 1.02852 1.18568 0.94589 0.90297 0.79231 0.94028 1.21448 0.91331 1.38267 1.05560 0.92181 1.24900 0.98202 0.94946 0.95611 1.69863 1.34982 1.38116 1.09372 0.86603 0.85610 0.77613 0.78278 1.20714 1.21000 1.19829 1.55390 1.69269 1.43051 1.16543 1.01807 0.73540 0.73255 0.72930 1.93550 1.86177 1.81862 1.33646 1.93564 1.48564 1.82581 1.70959 1.32413 1.09763 1.21761 1.10699 1.21449 0.98540 0.91231 0.89980 1.22515 0.96562 0.97836 1.01470 1.23110 0.92721 0.96258 0.90068 1.67702 1.31364 1.08528 1.08563 1.19418 0.89923 0.92489 0.91999 1.20672 0.79066 0.81304 0.83662 1.90846 1.57154 1.25187 1.61301 1.86600 1.42259 1.56834 1.38937 1.23396 0.99826 0.99980 0.82919 0.94457 0.94853 0.93013 0.94235 0.87990 0.92626 0.74882 0.81934 0.83130 0.81236 0.87998 0.91180 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.32 37.16 0.35 -2.69 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.04 16 3 C 0.28 6.61 2.26 -69.08 -0.16 6.46 16 4 H 0.04 1.06 7.73 -51.93 -0.40 0.66 16 5 C -0.53 -13.59 8.84 -34.44 -0.30 -13.89 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -23.72 11.30 55.43 0.63 -23.09 16 9 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -1.08 -22.94 3.61 -5.88 -0.02 -22.96 16 14 S 2.70 54.71 4.76 -107.50 -0.51 54.19 16 15 O -0.96 -20.70 15.27 -67.22 -1.03 -21.73 16 16 O -0.97 -20.32 16.13 -57.17 -0.92 -21.25 16 17 C -0.66 -12.33 5.90 -39.04 -0.23 -12.56 16 18 C 0.01 0.22 9.66 -39.31 -0.38 -0.16 16 19 C -0.16 -2.00 10.12 -39.31 -0.40 -2.40 16 20 C 0.14 1.78 11.18 -17.56 -0.20 1.58 16 21 N -0.45 -7.61 10.12 -9.81 -0.10 -7.71 16 22 C 0.20 3.80 6.75 -83.03 -0.56 3.24 16 23 C 0.51 9.81 7.79 34.76 0.27 10.08 16 24 O -0.46 -9.23 9.60 -27.42 -0.26 -9.50 16 25 O -0.33 -5.55 10.39 -40.44 -0.42 -5.97 16 26 C 0.03 0.41 10.56 101.05 1.07 1.47 16 27 H 0.04 0.74 7.69 -51.93 -0.40 0.34 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.58 5.97 -51.93 -0.31 2.27 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.42 8.46 7.76 -34.47 -0.27 8.19 16 34 H 0.16 2.20 7.45 -52.49 -0.39 1.81 16 35 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -32.37 342.83 -7.97 -40.34 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.70 Total: 7.21 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.78 Total: -10.29 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.51 Total: -53.76 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -2.63 Total: -58.44 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -0.51 Total: 54.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.37 -7.97 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414243017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.238 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds