Wall clock time and date at job start Tue Mar 31 2020 16:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 H 1.09000 * 109.47144 * 55.21563 * 3 2 1 5 5 C 1.50704 * 109.46840 * 175.21784 * 3 2 1 6 6 H 1.08001 * 120.00025 * 120.00019 * 5 3 2 7 7 C 1.37871 * 119.99813 * 299.72148 * 5 3 2 8 8 N 1.31513 * 120.00188 * 0.28018 * 7 5 3 9 9 Si 1.86806 * 119.99974 * 180.27758 * 7 5 3 10 10 H 1.48499 * 109.46789 * 89.99932 * 9 7 5 11 11 H 1.48500 * 109.47295 * 209.99956 * 9 7 5 12 12 H 1.48505 * 109.47004 * 330.00448 * 9 7 5 13 13 N 1.46499 * 109.46799 * 295.21345 * 3 2 1 14 14 S 1.65600 * 119.99771 * 118.43516 * 13 3 2 15 15 O 1.42096 * 106.40304 * 177.12214 * 14 13 3 16 16 O 1.42104 * 106.40396 * 310.04365 * 14 13 3 17 17 C 1.76206 * 107.21903 * 63.57908 * 14 13 3 18 18 C 1.38628 * 120.47241 * 242.75882 * 17 14 13 19 19 C 1.38582 * 118.48898 * 180.02562 * 18 17 14 20 20 C 1.38633 * 119.35822 * 0.02562 * 19 18 17 21 21 N 1.31474 * 120.90316 * 0.02562 * 20 19 18 22 22 C 1.32783 * 121.64310 * 359.66334 * 21 20 19 23 23 C 1.48065 * 119.72799 * 180.33332 * 22 21 20 24 24 O 1.21432 * 120.00117 * 174.41528 * 23 22 21 25 25 O 1.34681 * 120.00142 * 354.41327 * 23 22 21 26 26 C 1.45199 * 117.00121 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.46838 * 63.90002 * 1 2 3 28 28 H 1.08998 * 109.47046 * 183.89405 * 1 2 3 29 29 H 1.08995 * 109.47221 * 303.89927 * 1 2 3 30 30 H 1.09000 * 109.47445 * 239.99480 * 2 1 3 31 31 H 1.09003 * 109.46752 * 119.99632 * 2 1 3 32 32 H 0.97005 * 120.00202 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00389 * 298.43670 * 13 3 2 34 34 H 1.07999 * 120.75574 * 359.97438 * 18 17 14 35 35 H 1.07994 * 120.32150 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.54637 * 180.02562 * 20 19 18 37 37 H 1.08992 * 109.47297 * 180.02562 * 26 25 23 38 38 H 1.08997 * 109.47020 * 300.00655 * 26 25 23 39 39 H 1.09009 * 109.46639 * 60.00018 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9805 0.8440 5 6 3.5424 1.4441 0.1185 6 1 4.1449 1.8896 -0.6593 7 6 4.1474 0.8819 1.2224 8 7 3.4137 0.3393 2.1695 9 14 6.0094 0.8907 1.3730 10 1 6.4434 2.1261 2.0733 11 1 6.4490 -0.2978 2.1473 12 1 6.6157 0.8508 0.0180 13 7 1.6480 2.0990 -1.2496 14 16 0.6568 3.4250 -1.2127 15 8 0.5212 3.8622 -2.5579 16 8 -0.4506 3.0756 -0.3937 17 6 1.5233 4.7004 -0.3599 18 6 1.0299 5.2107 0.8309 19 6 1.7445 6.2135 1.4668 20 6 2.9220 6.6742 0.8984 21 7 3.3670 6.1732 -0.2328 22 6 2.7161 5.2075 -0.8708 23 6 3.2596 4.6691 -2.1385 24 8 2.7251 3.7189 -2.6732 25 8 4.3468 5.2333 -2.6985 26 6 4.8247 4.6529 -3.9407 27 1 -0.3633 0.4521 -0.9229 28 1 -0.3633 -1.0253 0.0698 29 1 -0.3633 0.5731 0.8529 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8393 -0.0559 2.9464 33 1 1.9690 1.7569 -2.0986 34 1 0.1092 4.8359 1.2529 35 1 1.3874 6.6321 2.3961 36 1 3.4815 7.4553 1.3916 37 1 5.7032 5.1998 -4.2830 38 1 5.0887 3.6084 -3.7758 39 1 4.0408 4.7147 -4.6957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414243017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:49 Heat of formation + Delta-G solvation = -128.497039 kcal Electronic energy + Delta-G solvation = -27882.417963 eV Core-core repulsion = 23917.363382 eV Total energy + Delta-G solvation = -3965.054580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07467 -40.73046 -38.40170 -37.89978 -37.27016 -36.83415 -34.14935 -33.96514 -33.01056 -32.17182 -28.93087 -28.53339 -26.06028 -25.21992 -24.85107 -22.71752 -21.85526 -20.55676 -19.68937 -19.17262 -18.63594 -18.25179 -17.91570 -17.69681 -17.38550 -16.93242 -16.36221 -16.20802 -15.46730 -15.29697 -15.10365 -14.85301 -14.74622 -14.46213 -14.19169 -13.90530 -13.50965 -13.42768 -13.12740 -13.09388 -13.06467 -12.95755 -12.69438 -12.65028 -12.45739 -12.16165 -11.93950 -11.82260 -11.73643 -11.52064 -11.43177 -11.32555 -10.86808 -10.62294 -10.50267 -9.90178 -8.12523 -6.26507 -1.02268 -0.43864 -0.19664 1.17680 1.36319 1.37525 1.40860 1.49053 2.11973 2.40399 2.45104 2.78640 2.93173 3.13932 3.31648 3.65875 3.72572 3.91784 4.11334 4.23701 4.29061 4.33374 4.48996 4.59822 4.64160 4.67705 4.71948 4.80675 4.92295 5.07264 5.16305 5.32558 5.37780 5.48890 5.66055 5.81157 6.06540 6.16141 6.25468 6.47763 6.61165 6.83356 7.42554 8.90496 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.007284 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.743584 B = 3843.369492 C = 4551.580060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.286 3.714 4 H 0.024 0.976 5 C -0.536 4.536 6 H 0.050 0.950 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.274 1.274 13 N -1.082 6.082 14 S 2.714 3.286 15 O -0.981 6.981 16 O -0.982 6.982 17 C -0.685 4.685 18 C -0.005 4.005 19 C -0.139 4.139 20 C 0.137 3.863 21 N -0.467 5.467 22 C 0.173 3.827 23 C 0.501 3.499 24 O -0.483 6.483 25 O -0.337 6.337 26 C 0.024 3.976 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.175 0.825 35 H 0.204 0.796 36 H 0.221 0.779 37 H 0.141 0.859 38 H 0.063 0.937 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 11.962 -2.326 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.041 0.959 5 C -0.575 4.575 6 H 0.069 0.931 7 C -0.174 4.174 8 N -0.544 5.544 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.198 1.198 13 N -0.843 5.843 14 S 2.800 3.200 15 O -0.971 6.971 16 O -0.972 6.972 17 C -0.772 4.772 18 C -0.031 4.031 19 C -0.159 4.159 20 C -0.021 4.021 21 N -0.179 5.179 22 C 0.034 3.966 23 C 0.343 3.657 24 O -0.370 6.370 25 O -0.251 6.251 26 C -0.069 4.069 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.193 0.807 35 H 0.221 0.779 36 H 0.237 0.763 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.426 12.031 -2.914 12.387 hybrid contribution 1.031 -0.560 0.319 1.216 sum 0.605 11.471 -2.594 11.777 Atomic orbital electron populations 1.21733 0.96748 1.00552 1.00637 1.21780 0.94017 0.98748 1.01809 1.18303 0.93544 0.90542 0.79589 0.95855 1.21618 0.92404 1.38094 1.05398 0.93125 1.25502 1.01644 0.94788 0.95439 1.69959 1.36245 1.38555 1.09680 0.85781 0.81466 0.77676 0.78099 1.20431 1.20456 1.19846 1.55257 1.69301 1.44035 1.15744 1.01147 0.73164 0.73132 0.72559 1.93518 1.86532 1.82047 1.35017 1.93533 1.49538 1.83067 1.71028 1.32060 1.10461 1.22220 1.12482 1.21860 0.99582 0.92361 0.89302 1.23117 0.95120 0.95419 1.02240 1.24084 0.93088 0.96231 0.88651 1.67747 1.31712 1.08337 1.10122 1.19477 0.90557 0.93954 0.92589 1.21036 0.79397 0.81169 0.84064 1.90806 1.57909 1.26192 1.62058 1.86588 1.41357 1.56901 1.40286 1.23754 1.01300 1.00288 0.81555 0.94082 0.92540 0.93913 0.94049 0.90131 0.92516 0.74766 0.80733 0.77876 0.76293 0.84127 0.91829 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.32 71.98 0.67 -5.11 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.29 13.88 2.26 44.25 0.10 13.98 16 4 H 0.02 1.23 7.73 -2.39 -0.02 1.21 16 5 C -0.54 -28.04 8.84 25.60 0.23 -27.82 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 7 C 0.03 1.41 5.30 84.65 0.45 1.86 16 8 N -0.91 -48.72 11.30 21.44 0.24 -48.48 16 9 Si 0.94 42.00 29.54 68.60 2.03 44.03 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 N -1.08 -47.29 3.61 -172.52 -0.62 -47.92 16 14 S 2.71 112.48 4.76 -56.49 -0.27 112.21 16 15 O -0.98 -43.50 15.27 -118.39 -1.81 -45.31 16 16 O -0.98 -41.93 16.13 -128.00 -2.06 -43.99 16 17 C -0.68 -25.50 5.90 22.62 0.13 -25.37 16 18 C -0.01 -0.15 9.66 22.45 0.22 0.07 16 19 C -0.14 -2.87 10.12 22.45 0.23 -2.64 16 20 C 0.14 3.06 11.18 84.84 0.95 4.01 16 21 N -0.47 -15.04 10.12 -184.94 -1.87 -16.92 16 22 C 0.17 6.53 6.75 41.87 0.28 6.81 16 23 C 0.50 19.59 7.79 70.43 0.55 20.14 16 24 O -0.48 -20.06 9.60 27.90 0.27 -19.79 16 25 O -0.34 -11.29 10.39 -55.91 -0.58 -11.87 16 26 C 0.02 0.58 10.56 113.37 1.20 1.78 16 27 H 0.04 1.64 7.69 -2.39 -0.02 1.62 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 4.14 5.97 -2.39 -0.01 4.13 16 32 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 33 H 0.42 17.66 7.76 -96.75 -0.75 16.91 16 34 H 0.18 4.51 7.45 -2.91 -0.02 4.49 16 35 H 0.20 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.22 2.54 8.06 -2.91 -0.02 2.51 16 37 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -71.52 342.83 0.83 -70.69 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.34 Total: 25.24 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 5.17 Total: -17.90 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -2.25 Total: -113.31 kcal Atomic # 8 Polarization: -116.77 SS G_CDS: -4.19 Total: -120.96 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 112.48 SS G_CDS: -0.27 Total: 112.21 kcal Total: -71.52 0.83 -70.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414243017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.807 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds