Wall clock time and date at job start Tue Mar 31 2020 14:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48509 * 109.47006 * 270.00067 * 3 2 1 5 5 H 1.48498 * 109.47121 * 29.99911 * 3 2 1 6 6 H 1.48498 * 109.47487 * 150.00332 * 3 2 1 7 7 C 1.38631 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00221 * 180.02562 * 7 2 1 9 9 O 1.34817 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99804 * 174.96261 * 9 7 2 11 11 C 1.38911 * 119.99909 * 185.07457 * 10 9 7 12 12 C 1.37997 * 120.00370 * 179.73211 * 11 10 9 13 13 C 1.38926 * 119.99793 * 0.54320 * 12 11 10 14 14 N 1.39991 * 120.00124 * 179.70724 * 13 12 11 15 15 C 1.34773 * 120.00031 * 35.14636 * 14 13 12 16 16 O 1.21293 * 120.00293 * 355.48763 * 15 14 13 17 17 C 1.50701 * 120.00046 * 175.49496 * 15 14 13 18 18 C 1.53003 * 109.46993 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46673 * 179.97438 * 18 17 15 20 20 S 1.81404 * 109.46770 * 179.97438 * 19 18 17 21 21 N 1.65602 * 104.44762 * 179.97438 * 20 19 18 22 22 O 1.42098 * 110.53977 * 291.61906 * 20 19 18 23 23 O 1.42096 * 110.54349 * 68.37467 * 20 19 18 24 24 C 1.38923 * 119.99488 * 359.72905 * 13 12 11 25 25 C 1.38005 * 119.99790 * 0.02562 * 24 13 12 26 26 H 0.96993 * 120.00124 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99296 * 0.02562 * 11 10 9 28 28 H 1.08004 * 120.00082 * 180.27467 * 12 11 10 29 29 H 0.96996 * 119.99889 * 215.14766 * 14 13 12 30 30 H 1.09001 * 109.46597 * 299.99571 * 17 15 14 31 31 H 1.08998 * 109.47454 * 59.99850 * 17 15 14 32 32 H 1.09001 * 109.46994 * 299.99200 * 18 17 15 33 33 H 1.08994 * 109.47677 * 59.99822 * 18 17 15 34 34 H 1.09001 * 109.46822 * 299.99385 * 19 18 17 35 35 H 1.08998 * 109.47549 * 59.99860 * 19 18 17 36 36 H 0.97001 * 120.00245 * 149.99801 * 21 20 19 37 37 H 0.97000 * 120.00129 * 330.00023 * 21 20 19 38 38 H 1.07992 * 119.99546 * 179.97438 * 24 13 12 39 39 H 1.08001 * 119.99605 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4002 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4403 0.6999 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1073 11 6 1.4354 -4.7348 -0.2199 12 6 2.1828 -5.8892 -0.3340 13 6 3.5704 -5.8220 -0.3249 14 7 4.3287 -6.9936 -0.4344 15 6 3.8928 -8.0087 -1.2064 16 8 2.8060 -7.9409 -1.7408 17 6 4.7556 -9.2281 -1.4057 18 6 4.0322 -10.2212 -2.3176 19 6 4.9085 -11.4589 -2.5204 20 16 4.0506 -12.6366 -3.6010 21 7 5.0978 -13.9125 -3.7354 22 8 2.9157 -13.1820 -2.9425 23 8 3.9543 -12.1223 -4.9221 24 6 4.2054 -4.5920 -0.2066 25 6 3.4578 -3.4372 -0.0976 26 1 -0.4850 0.8400 0.0004 27 1 0.3566 -4.7873 -0.2229 28 1 1.6891 -6.8453 -0.4260 29 1 5.1678 -7.0749 0.0453 30 1 5.6993 -8.9343 -1.8652 31 1 4.9514 -9.6963 -0.4410 32 1 3.0884 -10.5151 -1.8585 33 1 3.8368 -9.7529 -3.2822 34 1 5.8522 -11.1646 -2.9798 35 1 5.1044 -11.9275 -1.5559 36 1 4.7544 -14.8095 -3.8710 37 1 6.0544 -13.7628 -3.6786 38 1 5.2841 -4.5398 -0.1991 39 1 3.9515 -2.4811 -0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001440347010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:27 Heat of formation + Delta-G solvation = -113.379980 kcal Electronic energy + Delta-G solvation = -24212.863189 eV Core-core repulsion = 20248.464133 eV Total energy + Delta-G solvation = -3964.399056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.24434 -38.73818 -37.39525 -36.67596 -36.30012 -35.00790 -34.01982 -33.66495 -32.20586 -30.23653 -29.48626 -27.43272 -25.36232 -23.28326 -22.25106 -21.29121 -20.18977 -19.84359 -18.28072 -17.99214 -17.73403 -17.36872 -17.08508 -16.66635 -16.26595 -16.03205 -15.53667 -14.65761 -14.58224 -14.37036 -14.04658 -13.64732 -13.56570 -13.23290 -12.86897 -12.82016 -12.56078 -12.47201 -12.43299 -12.34328 -12.32833 -11.85529 -11.58804 -11.54917 -11.38140 -11.22552 -11.03656 -10.84072 -10.74822 -10.46864 -9.77682 -9.63578 -9.25577 -8.72329 -8.22856 -6.96377 -6.45504 -4.03785 -0.20300 2.04953 2.18716 2.43320 2.76924 3.11074 3.12140 3.15043 3.17531 3.33887 3.80349 3.95768 4.03117 4.39057 4.41782 4.54168 4.79996 4.84587 4.95939 5.08376 5.16621 5.31936 5.46735 5.46956 5.52681 5.64709 5.76807 6.11992 6.19618 6.25513 6.54013 6.78866 6.82755 6.95364 7.13991 7.20219 7.39015 7.65280 7.76374 7.98724 8.29873 8.99614 9.69814 10.72370 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.037394 B = 0.001805 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.604839 B =15512.841113 C =15745.964324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.148 3.852 11 C -0.179 4.179 12 C -0.067 4.067 13 C 0.030 3.970 14 N -0.660 5.660 15 C 0.501 3.499 16 O -0.525 6.525 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.624 4.624 20 S 2.615 3.385 21 N -1.253 6.253 22 O -0.960 6.960 23 O -0.958 6.958 24 C -0.089 4.089 25 C -0.221 4.221 26 H 0.270 0.730 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.402 0.598 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.420 0.580 37 H 0.412 0.588 38 H 0.110 0.890 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.814 -24.203 -2.193 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.094 3.906 11 C -0.199 4.199 12 C -0.087 4.087 13 C -0.062 4.062 14 N -0.305 5.305 15 C 0.288 3.712 16 O -0.401 6.401 17 C -0.171 4.171 18 C -0.139 4.139 19 C -0.754 4.754 20 S 2.706 3.294 21 N -0.925 5.925 22 O -0.949 6.949 23 O -0.947 6.947 24 C -0.109 4.109 25 C -0.241 4.241 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.236 0.764 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.250 0.750 37 H 0.238 0.762 38 H 0.128 0.872 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.598 -23.744 -2.983 28.032 hybrid contribution 2.015 0.672 0.645 2.220 sum 16.614 -23.071 -2.338 28.527 Atomic orbital electron populations 1.70044 1.05955 1.27707 1.45851 1.25299 0.95854 0.98860 0.96561 0.85705 0.78863 0.80080 0.78710 1.19878 1.20259 1.19234 1.21314 0.91772 0.80854 1.52918 0.89066 1.83993 1.34271 1.11403 1.78227 1.19427 0.90251 0.88146 0.92810 1.20168 0.99794 0.89889 1.10083 1.20749 0.91846 0.98169 0.97896 1.17267 0.90735 0.84773 1.13441 1.43216 1.24838 1.15005 1.47394 1.20637 0.87577 0.84432 0.78582 1.90737 1.21471 1.79824 1.48048 1.21580 0.99573 0.93967 1.01989 1.21069 0.98016 0.92160 1.02661 1.30505 1.13515 1.14060 1.17284 1.04757 0.74124 0.74725 0.75762 1.53270 1.21070 1.24958 1.93211 1.93625 1.47828 1.76430 1.77041 1.93643 1.85194 1.80368 1.35455 1.20477 0.98362 0.90775 1.01310 1.20972 0.93693 0.98400 1.11022 0.91980 0.86087 0.85276 0.76387 0.88353 0.88395 0.89048 0.89048 0.84698 0.84449 0.75040 0.76200 0.87203 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.91 9.48 30.88 0.29 -10.61 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -5.03 9.76 0.01 0.00 -5.03 16 10 C 0.15 3.59 6.65 -39.08 -0.26 3.33 16 11 C -0.18 -3.97 9.98 -39.42 -0.39 -4.36 16 12 C -0.07 -1.31 8.69 -39.41 -0.34 -1.65 16 13 C 0.03 0.52 6.30 -83.62 -0.53 -0.01 16 14 N -0.66 -8.27 5.34 -9.82 -0.05 -8.33 16 15 C 0.50 6.33 7.67 -10.99 -0.08 6.24 16 16 O -0.52 -9.03 13.42 5.55 0.07 -8.96 16 17 C -0.13 -0.91 5.70 -27.88 -0.16 -1.06 16 18 C -0.10 -0.77 4.51 -26.73 -0.12 -0.89 16 19 C -0.62 -2.31 6.18 37.16 0.23 -2.08 16 20 S 2.62 17.26 5.97 -107.50 -0.64 16.62 16 21 N -1.25 -3.50 9.36 60.35 0.57 -2.93 16 22 O -0.96 -10.37 18.10 -57.54 -1.04 -11.42 16 23 O -0.96 -10.66 18.10 -57.54 -1.04 -11.70 16 24 C -0.09 -1.57 9.96 -39.41 -0.39 -1.96 16 25 C -0.22 -4.70 9.16 -39.42 -0.36 -5.06 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 28 H 0.13 2.48 6.23 -52.48 -0.33 2.15 16 29 H 0.40 3.38 8.82 -40.82 -0.36 3.02 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.40 16 34 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 35 H 0.14 0.17 8.14 -51.92 -0.42 -0.26 16 36 H 0.42 0.95 8.96 -34.47 -0.31 0.64 16 37 H 0.41 -0.11 8.96 -34.47 -0.31 -0.42 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -40.67 351.37 -7.71 -48.38 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.39 Total: 4.39 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.21 Total: -17.15 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 1.27 Total: -35.79 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -2.01 Total: -37.11 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 17.26 SS G_CDS: -0.64 Total: 16.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -40.67 -7.71 -48.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440347010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.003 kcal (2) G-P(sol) polarization free energy of solvation -40.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds