Wall clock time and date at job start Tue Mar 31 2020 14:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48509 * 109.47006 * 270.00067 * 3 2 1 5 5 H 1.48498 * 109.47121 * 29.99911 * 3 2 1 6 6 H 1.48498 * 109.47487 * 150.00332 * 3 2 1 7 7 C 1.38631 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00221 * 180.02562 * 7 2 1 9 9 O 1.34817 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99804 * 174.96261 * 9 7 2 11 11 C 1.38911 * 119.99909 * 185.07457 * 10 9 7 12 12 C 1.37997 * 120.00370 * 179.73211 * 11 10 9 13 13 C 1.38926 * 119.99793 * 0.54320 * 12 11 10 14 14 N 1.39991 * 120.00124 * 179.70724 * 13 12 11 15 15 C 1.34773 * 120.00031 * 35.14636 * 14 13 12 16 16 O 1.21293 * 120.00293 * 355.48763 * 15 14 13 17 17 C 1.50701 * 120.00046 * 175.49496 * 15 14 13 18 18 C 1.53003 * 109.46993 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46673 * 179.97438 * 18 17 15 20 20 S 1.81404 * 109.46770 * 179.97438 * 19 18 17 21 21 N 1.65602 * 104.44762 * 179.97438 * 20 19 18 22 22 O 1.42098 * 110.53977 * 291.61906 * 20 19 18 23 23 O 1.42096 * 110.54349 * 68.37467 * 20 19 18 24 24 C 1.38923 * 119.99488 * 359.72905 * 13 12 11 25 25 C 1.38005 * 119.99790 * 0.02562 * 24 13 12 26 26 H 0.96993 * 120.00124 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99296 * 0.02562 * 11 10 9 28 28 H 1.08004 * 120.00082 * 180.27467 * 12 11 10 29 29 H 0.96996 * 119.99889 * 215.14766 * 14 13 12 30 30 H 1.09001 * 109.46597 * 299.99571 * 17 15 14 31 31 H 1.08998 * 109.47454 * 59.99850 * 17 15 14 32 32 H 1.09001 * 109.46994 * 299.99200 * 18 17 15 33 33 H 1.08994 * 109.47677 * 59.99822 * 18 17 15 34 34 H 1.09001 * 109.46822 * 299.99385 * 19 18 17 35 35 H 1.08998 * 109.47549 * 59.99860 * 19 18 17 36 36 H 0.97001 * 120.00245 * 149.99801 * 21 20 19 37 37 H 0.97000 * 120.00129 * 330.00023 * 21 20 19 38 38 H 1.07992 * 119.99546 * 179.97438 * 24 13 12 39 39 H 1.08001 * 119.99605 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4002 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4403 0.6999 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1073 11 6 1.4354 -4.7348 -0.2199 12 6 2.1828 -5.8892 -0.3340 13 6 3.5704 -5.8220 -0.3249 14 7 4.3287 -6.9936 -0.4344 15 6 3.8928 -8.0087 -1.2064 16 8 2.8060 -7.9409 -1.7408 17 6 4.7556 -9.2281 -1.4057 18 6 4.0322 -10.2212 -2.3176 19 6 4.9085 -11.4589 -2.5204 20 16 4.0506 -12.6366 -3.6010 21 7 5.0978 -13.9125 -3.7354 22 8 2.9157 -13.1820 -2.9425 23 8 3.9543 -12.1223 -4.9221 24 6 4.2054 -4.5920 -0.2066 25 6 3.4578 -3.4372 -0.0976 26 1 -0.4850 0.8400 0.0004 27 1 0.3566 -4.7873 -0.2229 28 1 1.6891 -6.8453 -0.4260 29 1 5.1678 -7.0749 0.0453 30 1 5.6993 -8.9343 -1.8652 31 1 4.9514 -9.6963 -0.4410 32 1 3.0884 -10.5151 -1.8585 33 1 3.8368 -9.7529 -3.2822 34 1 5.8522 -11.1646 -2.9798 35 1 5.1044 -11.9275 -1.5559 36 1 4.7544 -14.8095 -3.8710 37 1 6.0544 -13.7628 -3.6786 38 1 5.2841 -4.5398 -0.1991 39 1 3.9515 -2.4811 -0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001440347010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:26 Heat of formation + Delta-G solvation = -149.374942 kcal Electronic energy + Delta-G solvation = -24214.424047 eV Core-core repulsion = 20248.464133 eV Total energy + Delta-G solvation = -3965.959914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49226 -40.37305 -38.24339 -38.05933 -36.96203 -35.66807 -35.38356 -34.15441 -33.97088 -31.87398 -30.46181 -28.65315 -27.27083 -24.24736 -23.78185 -22.59071 -21.33371 -20.34056 -19.88316 -18.98957 -18.78351 -18.19234 -18.10772 -17.66160 -17.23771 -16.71519 -16.36990 -16.25854 -15.99467 -15.54377 -15.45918 -15.15110 -14.94433 -14.53750 -14.19202 -13.83410 -13.59961 -13.34581 -13.25324 -13.17106 -13.14074 -13.05191 -13.00554 -12.94877 -12.67786 -12.44474 -12.11024 -11.89517 -11.70789 -11.35471 -11.17886 -11.08497 -10.78245 -10.50555 -9.85038 -8.61313 -8.45414 -6.13243 -0.67854 0.51195 0.54940 1.36614 1.45421 1.54684 1.69436 2.01221 2.17817 2.22219 2.81535 2.82904 3.15498 3.44457 3.48041 3.52146 3.85680 3.91972 4.02579 4.12787 4.17660 4.43173 4.49223 4.60135 4.66210 4.70935 4.81880 4.95477 5.07058 5.11978 5.19702 5.31473 5.33459 5.47377 5.57385 5.68452 6.02579 6.18066 6.44353 6.59471 6.98511 7.30270 7.79628 8.77897 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.037394 B = 0.001805 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.604839 B =15512.841113 C =15745.964324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 1.022 2.978 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.413 4.413 8 H 0.108 0.892 9 O -0.233 6.233 10 C 0.106 3.894 11 C -0.194 4.194 12 C -0.076 4.076 13 C 0.061 3.939 14 N -0.648 5.648 15 C 0.495 3.505 16 O -0.577 6.577 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.593 4.593 20 S 2.615 3.385 21 N -1.236 6.236 22 O -1.012 7.012 23 O -1.015 7.015 24 C -0.078 4.078 25 C -0.222 4.222 26 H 0.272 0.728 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.429 0.571 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.424 0.576 37 H 0.429 0.571 38 H 0.162 0.838 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.413 -25.958 -1.434 34.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.224 4.224 3 Si 0.841 3.159 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.489 4.489 8 H 0.125 0.875 9 O -0.140 6.140 10 C 0.056 3.944 11 C -0.214 4.214 12 C -0.096 4.096 13 C -0.033 4.033 14 N -0.296 5.296 15 C 0.284 3.716 16 O -0.456 6.456 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.726 4.726 20 S 2.710 3.290 21 N -0.913 5.913 22 O -1.002 7.002 23 O -1.004 7.004 24 C -0.098 4.098 25 C -0.242 4.242 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.150 0.850 29 H 0.268 0.732 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.195 0.805 35 H 0.195 0.805 36 H 0.255 0.745 37 H 0.259 0.741 38 H 0.180 0.820 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.274 -25.615 -2.236 32.744 hybrid contribution 0.433 0.819 0.394 1.007 sum 20.707 -24.796 -1.842 32.358 Atomic orbital electron populations 1.70208 1.08190 1.28780 1.48962 1.26667 0.96865 1.02960 0.95912 0.84543 0.77925 0.74297 0.79152 1.19018 1.19852 1.17083 1.21885 0.92717 0.81267 1.52999 0.87513 1.83961 1.36044 1.12600 1.81366 1.19886 0.91924 0.87635 0.94999 1.20282 0.99740 0.90525 1.10877 1.20874 0.93379 0.97165 0.98172 1.17417 0.90187 0.86916 1.08807 1.43201 1.25299 1.13250 1.47821 1.21838 0.87386 0.85419 0.76929 1.90742 1.24215 1.80819 1.49864 1.21681 0.99179 0.90592 1.04208 1.21139 0.98552 0.94094 1.01819 1.30230 1.13359 1.10736 1.18248 1.04315 0.74189 0.75340 0.75118 1.52806 1.21630 1.24054 1.92844 1.93561 1.51200 1.77829 1.77562 1.93583 1.86329 1.81445 1.39017 1.20878 1.00645 0.89125 0.99127 1.21154 0.92489 1.00098 1.10418 0.91919 0.87384 0.85022 0.73179 0.84329 0.84196 0.91077 0.91281 0.80535 0.80500 0.74543 0.74102 0.82020 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.45 13.67 21.61 0.30 -57.16 16 2 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 3 Si 1.02 42.58 29.55 68.60 2.03 44.60 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.41 -23.95 9.48 67.91 0.64 -23.31 16 8 H 0.11 5.54 5.20 -2.91 -0.02 5.52 16 9 O -0.23 -14.26 9.76 -22.89 -0.22 -14.48 16 10 C 0.11 5.40 6.65 22.59 0.15 5.55 16 11 C -0.19 -9.05 9.98 22.37 0.22 -8.82 16 12 C -0.08 -2.97 8.69 22.38 0.19 -2.78 16 13 C 0.06 1.92 6.30 38.17 0.24 2.16 16 14 N -0.65 -13.12 5.34 -303.37 -1.62 -14.74 16 15 C 0.49 10.62 7.67 87.66 0.67 11.30 16 16 O -0.58 -19.22 13.42 -3.07 -0.04 -19.26 16 17 C -0.12 -0.93 5.70 29.85 0.17 -0.76 16 18 C -0.12 -1.43 4.51 30.60 0.14 -1.29 16 19 C -0.59 -1.53 6.18 71.98 0.44 -1.08 16 20 S 2.61 31.31 5.97 -56.49 -0.34 30.98 16 21 N -1.24 -4.02 9.36 37.02 0.35 -3.67 16 22 O -1.01 -22.05 18.10 -127.65 -2.31 -24.37 16 23 O -1.01 -22.78 18.10 -127.65 -2.31 -25.09 16 24 C -0.08 -2.46 9.96 22.38 0.22 -2.24 16 25 C -0.22 -9.30 9.16 22.37 0.20 -9.10 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.13 5.10 6.23 -2.91 -0.02 5.08 16 29 H 0.43 4.33 8.82 -92.71 -0.82 3.51 16 30 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 33 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 34 H 0.18 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.18 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.42 1.22 8.96 -96.74 -0.87 0.35 16 37 H 0.43 -1.78 8.96 -96.74 -0.87 -2.65 16 38 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.13 5.44 5.63 -2.91 -0.02 5.43 16 Total: -1.00 -100.33 351.37 -1.82 -102.15 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -1.41 Total: 12.50 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.77 Total: -31.45 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -0.98 Total: -75.57 kcal Atomic # 8 Polarization: -78.32 SS G_CDS: -4.89 Total: -83.21 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 31.31 SS G_CDS: -0.34 Total: 30.98 kcal Total: -100.33 -1.82 -102.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440347010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.230 kcal (2) G-P(sol) polarization free energy of solvation -100.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds