Wall clock time and date at job start Tue Mar 31 2020 15:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99690 * 2 1 4 4 C 1.38235 * 120.00041 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99633 * 0.25856 * 4 3 2 6 6 C 1.50705 * 119.99826 * 179.72608 * 5 4 3 7 7 O 1.45201 * 109.47333 * 89.99613 * 6 5 4 8 8 C 1.34706 * 117.00242 * 179.97438 * 7 6 5 9 9 O 1.21471 * 119.99880 * 0.02562 * 8 7 6 10 10 C 1.47745 * 119.99982 * 180.02562 * 8 7 6 11 11 C 1.39721 * 120.10615 * 359.72585 * 10 8 7 12 12 C 1.38028 * 120.02986 * 179.70077 * 11 10 8 13 13 C 1.38189 * 120.25098 * 0.59430 * 12 11 10 14 14 C 1.39189 * 120.21260 * 359.68409 * 13 12 11 15 15 S 1.76198 * 120.01983 * 179.97438 * 14 13 12 16 16 C 1.76204 * 99.99896 * 265.52361 * 15 14 13 17 17 H 1.08004 * 119.99764 * 5.12358 * 16 15 14 18 18 C 1.38724 * 119.99910 * 185.11863 * 16 15 14 19 19 N 1.31625 * 119.99979 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47529 * 60.00141 * 20 18 16 22 22 H 1.48503 * 109.47230 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47055 * 299.99730 * 20 18 16 24 24 C 1.38873 * 119.96018 * 0.02562 * 14 13 12 25 25 C 1.38228 * 120.00090 * 359.48289 * 5 4 3 26 26 C 1.38234 * 120.00122 * 0.49321 * 25 5 4 27 27 H 1.09002 * 109.47226 * 90.00495 * 1 2 3 28 28 H 1.09008 * 109.47181 * 209.99938 * 1 2 3 29 29 H 1.08996 * 109.47321 * 330.00085 * 1 2 3 30 30 H 1.08002 * 120.00543 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00213 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47184 * 209.99820 * 6 5 4 33 33 H 1.09006 * 109.47127 * 329.99683 * 6 5 4 34 34 H 1.08001 * 119.98513 * 359.97322 * 11 10 8 35 35 H 1.08001 * 119.87694 * 180.29718 * 12 11 10 36 36 H 1.07993 * 119.89493 * 179.69429 * 13 12 11 37 37 H 0.97001 * 119.99625 * 180.02562 * 19 18 16 38 38 H 1.08004 * 120.11903 * 180.02562 * 24 14 13 39 39 H 1.08001 * 120.00452 * 180.25404 * 25 5 4 40 40 H 1.07997 * 120.00251 * 179.76310 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0000 -0.0043 6 6 5.7787 0.0001 -0.0100 7 8 6.2679 -0.0024 1.3571 8 6 7.6040 -0.0032 1.5286 9 8 8.3403 -0.0014 0.5625 10 6 8.1738 -0.0063 2.8918 11 6 7.3289 -0.0026 4.0046 12 6 7.8629 -0.0117 5.2773 13 6 9.2330 -0.0121 5.4575 14 6 10.0842 -0.0100 4.3563 15 16 11.8304 -0.0099 4.5918 16 6 12.1512 1.7203 4.5015 17 1 11.3308 2.4182 4.4214 18 6 13.4575 2.1862 4.5333 19 7 14.4573 1.3356 4.6304 20 14 13.7975 4.0205 4.4382 21 1 13.1446 4.7050 5.5829 22 1 15.2628 4.2557 4.4906 23 1 13.2555 4.5590 3.1648 24 6 9.5565 -0.0069 3.0717 25 6 3.5806 -1.1971 0.0011 26 6 2.1982 -1.1972 0.0010 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 6.1401 -0.8889 -0.5268 33 1 6.1401 0.8911 -0.5236 34 1 6.2575 0.0030 3.8688 35 1 7.2075 -0.0137 6.1357 36 1 9.6446 -0.0143 6.4559 37 1 15.3707 1.6614 4.6530 38 1 10.2146 -0.0056 2.2154 39 1 4.1205 -2.1324 0.0014 40 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458862958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:09 Heat of formation + Delta-G solvation = -47.341216 kcal Electronic energy + Delta-G solvation = -23154.590948 eV Core-core repulsion = 19603.904812 eV Total energy + Delta-G solvation = -3550.686137 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52285 -39.61657 -38.23371 -36.38739 -33.68811 -32.52559 -31.27355 -31.16114 -30.59130 -29.02757 -25.58883 -25.38356 -23.71334 -23.07056 -22.33222 -21.13318 -20.73412 -18.36116 -17.37684 -17.23283 -16.55166 -16.31981 -15.62923 -15.41563 -15.31278 -14.86769 -14.71116 -14.46990 -14.13557 -13.76539 -13.61428 -13.33290 -13.32921 -12.97100 -12.82232 -12.57595 -12.26937 -12.19549 -11.65518 -11.44538 -11.34808 -11.19097 -11.16632 -11.08738 -10.73139 -10.70942 -10.40112 -9.95196 -9.24739 -9.17672 -9.06066 -8.94759 -8.70741 -8.06319 -6.74067 -6.30223 -4.04776 0.83371 0.99772 1.08486 1.62933 2.67230 2.74186 3.18165 3.21996 3.25484 3.41914 3.53296 4.02350 4.22050 4.34635 4.43230 4.57584 4.67837 4.77572 4.87131 5.06015 5.10750 5.12928 5.16248 5.19418 5.24698 5.33038 5.38500 5.41914 5.45053 5.68483 5.73081 5.73349 5.80359 5.94722 6.04050 6.19012 6.24098 6.25408 6.36095 6.55411 6.63402 6.64918 6.88066 7.13103 7.55614 7.86557 8.30651 9.15453 10.76356 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.002214 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.891748 B =12642.966987 C =12990.720524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.090 4.090 5 C -0.100 4.100 6 C 0.109 3.891 7 O -0.349 6.349 8 C 0.513 3.487 9 O -0.506 6.506 10 C -0.144 4.144 11 C -0.065 4.065 12 C -0.147 4.147 13 C -0.045 4.045 14 C -0.113 4.113 15 S -0.031 6.031 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.014 4.014 25 C -0.090 4.090 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.270 0.730 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.792 -3.333 -6.968 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.100 4.100 6 C 0.035 3.965 7 O -0.267 6.267 8 C 0.358 3.642 9 O -0.395 6.395 10 C -0.147 4.147 11 C -0.083 4.083 12 C -0.167 4.167 13 C -0.066 4.066 14 C -0.223 4.223 15 S 0.204 5.796 16 C -0.669 4.669 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.035 4.035 25 C -0.108 4.108 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.080 0.920 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.586 -4.230 -7.103 25.939 hybrid contribution -0.590 2.147 -0.465 2.275 sum -25.176 -2.083 -7.568 26.372 Atomic orbital electron populations 1.20822 0.91074 1.02966 1.02420 1.20015 0.96215 0.93248 0.98405 1.21036 0.93958 0.97725 1.01534 1.21109 0.94283 0.97616 0.97791 1.19521 0.93448 0.93854 1.03186 1.21780 0.90027 1.03558 0.81130 1.86615 1.24129 1.84612 1.31350 1.21365 0.80117 0.72507 0.90215 1.90838 1.60503 1.45975 1.42142 1.19116 0.94151 1.12023 0.89390 1.21358 0.99467 0.95694 0.91808 1.21140 0.95395 1.03397 0.96754 1.22050 0.92654 0.92526 0.99329 1.22823 1.03731 1.02143 0.93640 1.83628 0.90299 1.12372 1.93348 1.22807 0.95129 0.90214 1.58790 0.90630 1.25005 0.94974 0.99279 0.94315 1.69977 0.99407 1.34492 1.46610 0.86171 0.77349 0.82726 0.79037 1.19793 1.20722 1.19808 1.21982 0.92393 0.91056 0.98092 1.21094 0.94269 0.97576 0.97862 1.21032 0.93955 0.97706 1.01580 0.91042 0.91403 0.91402 0.85773 0.85653 0.90221 0.90226 0.85178 0.85551 0.84836 0.91972 0.84143 0.85665 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.08 -0.62 5.88 -104.62 -0.62 -1.23 16 3 C -0.12 -1.02 9.70 -39.59 -0.38 -1.41 16 4 C -0.09 -0.85 9.70 -39.58 -0.38 -1.23 16 5 C -0.10 -1.03 5.52 -104.62 -0.58 -1.60 16 6 C 0.11 1.26 5.60 36.01 0.20 1.47 16 7 O -0.35 -4.95 9.45 -40.51 -0.38 -5.34 16 8 C 0.51 8.65 7.90 34.62 0.27 8.92 16 9 O -0.51 -9.72 16.13 -19.24 -0.31 -10.03 16 10 C -0.14 -2.51 5.87 -105.01 -0.62 -3.13 16 11 C -0.06 -0.96 9.62 -39.10 -0.38 -1.34 16 12 C -0.15 -2.16 10.02 -39.68 -0.40 -2.56 16 13 C -0.04 -0.80 9.79 -39.25 -0.38 -1.18 16 14 C -0.11 -2.40 5.45 -38.99 -0.21 -2.61 16 15 S -0.03 -0.79 21.41 -107.50 -2.30 -3.09 16 16 C -0.52 -14.64 9.46 30.91 0.29 -14.35 16 17 H 0.08 2.09 7.79 -52.48 -0.41 1.69 16 18 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 19 N -0.87 -25.29 13.22 55.49 0.73 -24.56 16 20 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.01 -0.29 9.34 -38.90 -0.36 -0.65 16 25 C -0.09 -0.83 9.70 -39.59 -0.38 -1.21 16 26 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.31 8.09 -51.92 -0.42 -0.11 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.13 1.62 7.60 -52.49 -0.40 1.22 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.14 3.02 7.65 -52.48 -0.40 2.61 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -31.94 370.02 -10.74 -42.68 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.98 Total: 0.21 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -4.05 Total: -21.80 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.73 Total: -24.56 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.69 Total: -15.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.94 -10.74 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458862958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.659 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds