Wall clock time and date at job start Tue Mar 31 2020 15:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99690 * 2 1 4 4 C 1.38235 * 120.00041 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99633 * 0.25856 * 4 3 2 6 6 C 1.50705 * 119.99826 * 179.72608 * 5 4 3 7 7 O 1.45201 * 109.47333 * 89.99613 * 6 5 4 8 8 C 1.34706 * 117.00242 * 179.97438 * 7 6 5 9 9 O 1.21471 * 119.99880 * 0.02562 * 8 7 6 10 10 C 1.47745 * 119.99982 * 180.02562 * 8 7 6 11 11 C 1.39721 * 120.10615 * 359.72585 * 10 8 7 12 12 C 1.38028 * 120.02986 * 179.70077 * 11 10 8 13 13 C 1.38189 * 120.25098 * 0.59430 * 12 11 10 14 14 C 1.39189 * 120.21260 * 359.68409 * 13 12 11 15 15 S 1.76198 * 120.01983 * 179.97438 * 14 13 12 16 16 C 1.76204 * 99.99896 * 265.52361 * 15 14 13 17 17 H 1.08004 * 119.99764 * 5.12358 * 16 15 14 18 18 C 1.38724 * 119.99910 * 185.11863 * 16 15 14 19 19 N 1.31625 * 119.99979 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47529 * 60.00141 * 20 18 16 22 22 H 1.48503 * 109.47230 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47055 * 299.99730 * 20 18 16 24 24 C 1.38873 * 119.96018 * 0.02562 * 14 13 12 25 25 C 1.38228 * 120.00090 * 359.48289 * 5 4 3 26 26 C 1.38234 * 120.00122 * 0.49321 * 25 5 4 27 27 H 1.09002 * 109.47226 * 90.00495 * 1 2 3 28 28 H 1.09008 * 109.47181 * 209.99938 * 1 2 3 29 29 H 1.08996 * 109.47321 * 330.00085 * 1 2 3 30 30 H 1.08002 * 120.00543 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00213 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47184 * 209.99820 * 6 5 4 33 33 H 1.09006 * 109.47127 * 329.99683 * 6 5 4 34 34 H 1.08001 * 119.98513 * 359.97322 * 11 10 8 35 35 H 1.08001 * 119.87694 * 180.29718 * 12 11 10 36 36 H 1.07993 * 119.89493 * 179.69429 * 13 12 11 37 37 H 0.97001 * 119.99625 * 180.02562 * 19 18 16 38 38 H 1.08004 * 120.11903 * 180.02562 * 24 14 13 39 39 H 1.08001 * 120.00452 * 180.25404 * 25 5 4 40 40 H 1.07997 * 120.00251 * 179.76310 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0000 -0.0043 6 6 5.7787 0.0001 -0.0100 7 8 6.2679 -0.0024 1.3571 8 6 7.6040 -0.0032 1.5286 9 8 8.3403 -0.0014 0.5625 10 6 8.1738 -0.0063 2.8918 11 6 7.3289 -0.0026 4.0046 12 6 7.8629 -0.0117 5.2773 13 6 9.2330 -0.0121 5.4575 14 6 10.0842 -0.0100 4.3563 15 16 11.8304 -0.0099 4.5918 16 6 12.1512 1.7203 4.5015 17 1 11.3308 2.4182 4.4214 18 6 13.4575 2.1862 4.5333 19 7 14.4573 1.3356 4.6304 20 14 13.7975 4.0205 4.4382 21 1 13.1446 4.7050 5.5829 22 1 15.2628 4.2557 4.4906 23 1 13.2555 4.5590 3.1648 24 6 9.5565 -0.0069 3.0717 25 6 3.5806 -1.1971 0.0011 26 6 2.1982 -1.1972 0.0010 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 6.1401 -0.8889 -0.5268 33 1 6.1401 0.8911 -0.5236 34 1 6.2575 0.0030 3.8688 35 1 7.2075 -0.0137 6.1357 36 1 9.6446 -0.0143 6.4559 37 1 15.3707 1.6614 4.6530 38 1 10.2146 -0.0056 2.2154 39 1 4.1205 -2.1324 0.0014 40 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458862958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:08 Heat of formation + Delta-G solvation = -62.054266 kcal Electronic energy + Delta-G solvation = -23155.228954 eV Core-core repulsion = 19603.904812 eV Total energy + Delta-G solvation = -3551.324143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75571 -40.36686 -39.55945 -37.62993 -34.65673 -34.38174 -32.51146 -31.99996 -31.89893 -29.75589 -27.74554 -26.27346 -24.86387 -23.74331 -23.70021 -22.08862 -21.76280 -20.07922 -19.05039 -18.40806 -17.62935 -17.33990 -16.93350 -16.76215 -16.30482 -16.23635 -15.94151 -15.87812 -15.08631 -14.68668 -14.64260 -14.45716 -14.36006 -14.30571 -13.81490 -13.63202 -13.27257 -13.12901 -12.99600 -12.96432 -12.83450 -12.71219 -12.43103 -12.10296 -12.01823 -11.81591 -11.73754 -11.68098 -11.22205 -10.81109 -10.09125 -9.88613 -9.75917 -9.59982 -8.81708 -8.39656 -6.19943 -0.38796 0.12790 0.18797 0.44811 1.27533 1.38779 1.39493 1.45290 1.52449 1.72348 2.22945 2.67980 2.80691 2.93527 3.40086 3.47873 3.74620 3.74705 3.88592 4.04272 4.05434 4.07254 4.09854 4.22423 4.32314 4.41130 4.53192 4.56257 4.62589 4.82387 4.84132 4.85127 4.90388 5.10049 5.13582 5.17530 5.26193 5.30320 5.38029 5.42403 5.44457 5.57042 5.65654 5.78532 6.03691 6.15277 6.57080 7.00795 8.67046 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.002214 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.891748 B =12642.966987 C =12990.720524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.118 4.118 6 C 0.106 3.894 7 O -0.340 6.340 8 C 0.518 3.482 9 O -0.538 6.538 10 C -0.149 4.149 11 C -0.043 4.043 12 C -0.125 4.125 13 C -0.048 4.048 14 C -0.133 4.133 15 S -0.086 6.086 16 C -0.539 4.539 17 H 0.069 0.931 18 C 0.020 3.980 19 N -0.905 5.905 20 Si 0.991 3.009 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.034 4.034 25 C -0.099 4.099 26 C -0.130 4.130 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.142 0.858 37 H 0.274 0.726 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.683 -2.520 -6.255 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.118 4.118 6 C 0.033 3.967 7 O -0.257 6.257 8 C 0.365 3.635 9 O -0.430 6.430 10 C -0.152 4.152 11 C -0.061 4.061 12 C -0.144 4.144 13 C -0.069 4.069 14 C -0.245 4.245 15 S 0.149 5.851 16 C -0.686 4.686 17 H 0.087 0.913 18 C -0.185 4.185 19 N -0.541 5.541 20 Si 0.813 3.187 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.055 4.055 25 C -0.117 4.117 26 C -0.148 4.148 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.195 0.805 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.507 -3.429 -6.384 29.414 hybrid contribution 0.366 1.817 -0.729 1.992 sum -28.142 -1.613 -7.113 29.071 Atomic orbital electron populations 1.20881 0.89132 1.03888 1.03298 1.20396 0.97727 0.92955 0.96959 1.21311 0.93570 0.98903 1.01096 1.21273 0.95089 0.97529 0.98031 1.19470 0.92278 0.94810 1.05261 1.21980 0.91283 1.03686 0.79729 1.86593 1.22150 1.83843 1.33131 1.21274 0.80863 0.71793 0.89612 1.90824 1.61506 1.47538 1.43087 1.19167 0.93153 1.11985 0.90880 1.21798 1.00849 0.92635 0.90812 1.21592 0.94168 1.00353 0.98299 1.22185 0.93956 0.92215 0.98497 1.22500 1.00820 1.05848 0.95286 1.83514 0.95808 1.12054 1.93707 1.23056 0.95417 0.91229 1.58907 0.91324 1.25997 0.94615 1.04272 0.93664 1.70097 0.99841 1.36681 1.47465 0.85110 0.77686 0.76670 0.79262 1.18531 1.19613 1.19570 1.21676 0.93741 0.93224 0.96890 1.21274 0.95051 0.97505 0.97889 1.21323 0.93589 0.98872 1.01006 0.90073 0.90463 0.90568 0.83913 0.85266 0.90005 0.90319 0.81494 0.80544 0.84040 0.91673 0.87018 0.84994 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.01 71.24 0.71 -0.13 16 2 C -0.08 -1.04 5.88 -19.87 -0.12 -1.16 16 3 C -0.13 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.10 -1.75 9.70 22.27 0.22 -1.54 16 5 C -0.12 -2.29 5.52 -19.86 -0.11 -2.39 16 6 C 0.11 2.42 5.60 71.24 0.40 2.82 16 7 O -0.34 -9.21 9.45 -56.16 -0.53 -9.74 16 8 C 0.52 17.40 7.90 70.34 0.56 17.96 16 9 O -0.54 -21.37 16.13 19.93 0.32 -21.05 16 10 C -0.15 -5.10 5.87 -20.12 -0.12 -5.22 16 11 C -0.04 -1.13 9.62 22.58 0.22 -0.91 16 12 C -0.12 -3.17 10.02 22.21 0.22 -2.95 16 13 C -0.05 -1.65 9.79 22.49 0.22 -1.43 16 14 C -0.13 -5.83 5.45 22.65 0.12 -5.70 16 15 S -0.09 -4.61 21.41 -56.49 -1.21 -5.82 16 16 C -0.54 -31.33 9.46 67.94 0.64 -30.69 16 17 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 18 C 0.02 1.14 5.49 84.84 0.47 1.60 16 19 N -0.90 -54.20 13.22 21.63 0.29 -53.91 16 20 Si 0.99 44.37 29.55 68.60 2.03 46.40 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.03 -1.44 9.34 22.71 0.21 -1.22 16 25 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 26 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.44 8.09 -2.38 -0.02 0.42 16 29 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 30 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 33 H 0.08 1.79 8.08 -2.38 -0.02 1.77 16 34 H 0.17 3.26 7.60 -2.91 -0.02 3.24 16 35 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.11 5.23 7.65 -2.91 -0.02 5.21 16 39 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -72.80 370.02 6.23 -66.57 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.05 Total: 13.18 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 4.29 Total: -35.62 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.29 Total: -53.91 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.21 Total: -30.79 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.21 Total: -5.82 kcal Total: -72.80 6.23 -66.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458862958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.518 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds