Wall clock time and date at job start Tue Mar 31 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48496 * 109.47176 * 239.99833 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46951 * 119.99783 * 3 2 1 7 7 C 1.38651 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99636 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99798 * 185.06213 * 9 7 2 11 11 C 1.38888 * 120.06798 * 354.45707 * 10 9 7 12 12 C 1.38090 * 119.92878 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.07155 * 0.02579 * 12 11 10 14 14 C 1.50699 * 119.93043 * 179.97438 * 13 12 11 15 15 S 1.81404 * 109.46908 * 90.00222 * 14 13 12 16 16 C 1.81396 * 103.00041 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47378 * 180.02562 * 16 15 14 18 18 O 1.21261 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.47165 * 120.00489 * 180.02562 * 17 16 15 20 20 C 1.39853 * 120.17767 * 179.97438 * 19 17 16 21 21 C 1.37884 * 119.82971 * 180.22847 * 20 19 17 22 22 C 1.38407 * 120.16726 * 359.47660 * 21 20 19 23 23 C 1.38403 * 120.35086 * 0.54418 * 22 21 20 24 24 C 1.37891 * 120.17187 * 359.70968 * 23 22 21 25 25 C 1.38304 * 120.13662 * 0.25411 * 13 12 11 26 26 C 1.38096 * 120.06572 * 359.44837 * 25 13 12 27 27 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03099 * 0.02562 * 11 10 9 29 29 H 1.08007 * 119.96686 * 180.02562 * 12 11 10 30 30 H 1.08997 * 109.47597 * 330.00359 * 14 13 12 31 31 H 1.09001 * 109.47266 * 209.99938 * 14 13 12 32 32 H 1.08999 * 109.47186 * 59.99628 * 16 15 14 33 33 H 1.09006 * 109.47541 * 299.99964 * 16 15 14 34 34 H 1.08000 * 120.08121 * 359.95214 * 20 19 17 35 35 H 1.07994 * 119.91627 * 179.74219 * 21 20 19 36 36 H 1.08004 * 119.82144 * 180.25608 * 22 21 20 37 37 H 1.07998 * 119.91658 * 179.72560 * 23 22 21 38 38 H 1.07994 * 120.08494 * 179.97438 * 24 23 22 39 39 H 1.07998 * 119.96114 * 179.70677 * 25 13 12 40 40 H 1.08006 * 120.03264 * 180.27849 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0016 10 6 2.0701 -3.5046 0.1047 11 6 3.4574 -3.4394 0.0922 12 6 4.2025 -4.5970 0.2000 13 6 3.5687 -5.8205 0.3196 14 6 4.3850 -7.0819 0.4364 15 16 4.7201 -7.4254 2.1858 16 6 5.6948 -8.9539 2.1221 17 6 6.0573 -9.3773 3.5222 18 8 5.6943 -8.7132 4.4696 19 6 6.8527 -10.5962 3.7398 20 6 7.1916 -10.9922 5.0375 21 6 7.9412 -12.1329 5.2328 22 6 8.3489 -12.8913 4.1492 23 6 8.0179 -12.5059 2.8618 24 6 7.2732 -11.3649 2.6497 25 6 2.1874 -5.8893 0.3265 26 6 1.4367 -4.7346 0.2253 27 1 -0.4850 0.8400 0.0004 28 1 3.9528 -2.4843 -0.0016 29 1 5.2814 -4.5470 0.1908 30 1 5.3276 -6.9553 -0.0960 31 1 3.8314 -7.9144 0.0022 32 1 6.6046 -8.7810 1.5474 33 1 5.1081 -9.7395 1.6458 34 1 6.8708 -10.4036 5.8843 35 1 8.2072 -12.4377 6.2341 36 1 8.9323 -13.7861 4.3089 37 1 8.3434 -13.1005 2.0210 38 1 7.0161 -11.0653 1.6445 39 1 1.6955 -6.8466 0.4153 40 1 0.3580 -4.7885 0.2353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473053470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:52 Heat of formation + Delta-G solvation = -12.730966 kcal Electronic energy + Delta-G solvation = -22597.869840 eV Core-core repulsion = 19048.684516 eV Total energy + Delta-G solvation = -3549.185324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31668 -39.06656 -38.46359 -36.72262 -32.51830 -32.44987 -31.44245 -31.14764 -30.20066 -29.76946 -26.28926 -24.97943 -24.19439 -22.88864 -22.00781 -20.79288 -20.18384 -18.02398 -17.81539 -17.06785 -16.45172 -16.19990 -15.64557 -15.52066 -14.89960 -14.85757 -14.68090 -14.47240 -14.17030 -13.99394 -13.75458 -13.60411 -13.39094 -13.19045 -12.92869 -12.73030 -12.60122 -12.16227 -12.07964 -11.64373 -11.58422 -11.25044 -10.92067 -10.75700 -10.68494 -10.45998 -10.12003 -9.84362 -9.49309 -9.44966 -9.37316 -8.83700 -8.22261 -7.55272 -7.19343 -6.48217 -4.06264 0.23395 0.88413 1.33669 2.04014 2.20614 2.30809 2.81162 3.12422 3.14923 3.16571 3.34491 3.59984 3.94844 4.31000 4.44666 4.54394 4.57227 4.77186 4.77394 4.89855 4.99260 5.03974 5.06078 5.11600 5.18479 5.26701 5.35192 5.49461 5.65639 5.70359 5.81295 5.82351 5.91959 5.95682 6.18227 6.37439 6.38435 6.65051 6.86173 7.01355 7.16710 7.19646 7.31699 7.40250 7.77026 7.96592 8.96974 9.65612 10.69259 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.001810 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.894464 B =15462.208526 C =15755.096211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.235 4.235 12 C -0.049 4.049 13 C -0.181 4.181 14 C -0.028 4.028 15 S -0.208 6.208 16 C -0.161 4.161 17 C 0.409 3.591 18 O -0.424 6.424 19 C -0.160 4.160 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.133 4.133 24 C -0.074 4.074 25 C -0.052 4.052 26 C -0.193 4.193 27 H 0.271 0.729 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.317 -24.522 3.731 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.105 3.895 11 C -0.255 4.255 12 C -0.069 4.069 13 C -0.184 4.184 14 C -0.175 4.175 15 S 0.022 5.978 16 C -0.309 4.309 17 C 0.284 3.716 18 O -0.296 6.296 19 C -0.163 4.163 20 C -0.079 4.079 21 C -0.150 4.150 22 C -0.108 4.108 23 C -0.151 4.151 24 C -0.092 4.092 25 C -0.072 4.072 26 C -0.213 4.213 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.131 0.869 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.386 -23.393 5.125 28.465 hybrid contribution 0.979 -0.015 -1.200 1.549 sum 16.366 -23.408 3.926 28.830 Atomic orbital electron populations 1.70030 1.05990 1.27925 1.45453 1.25315 0.95864 0.98909 0.96386 0.85765 0.78719 0.79627 0.79255 1.19456 1.20226 1.19403 1.21316 0.91863 0.80756 1.52933 0.88965 1.83975 1.34490 1.11533 1.77545 1.19428 0.90321 0.88038 0.91692 1.21133 0.93767 0.98860 1.11695 1.20592 0.98423 0.91517 0.96342 1.18534 0.93174 0.92358 1.14309 1.22148 1.02024 0.99380 0.93922 1.88009 1.68826 1.28472 1.12447 1.23950 1.04617 1.02065 1.00236 1.21770 0.76889 0.83412 0.89539 1.90595 1.43722 1.51063 1.44248 1.20420 1.03259 0.97933 0.94639 1.21474 0.94415 0.95519 0.96473 1.21194 0.98943 0.95338 0.99520 1.21463 0.97632 0.99027 0.92722 1.21171 0.99309 0.97175 0.97432 1.21492 0.95371 0.93913 0.98456 1.20482 0.92586 0.96985 0.97193 1.20188 0.99665 0.90175 1.11261 0.91865 0.85351 0.87315 0.90282 0.90237 0.87016 0.87009 0.84696 0.85247 0.85501 0.85264 0.85007 0.86879 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.13 13.67 55.48 0.76 -24.38 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.49 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.17 -4.93 9.76 0.04 0.00 -4.93 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.24 -5.13 9.17 -39.39 -0.36 -5.49 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 13 C -0.18 -3.11 5.14 -104.57 -0.54 -3.64 16 14 C -0.03 -0.37 6.07 36.00 0.22 -0.15 16 15 S -0.21 -3.02 20.86 -107.50 -2.24 -5.26 16 16 C -0.16 -1.55 5.04 36.00 0.18 -1.37 16 17 C 0.41 4.60 7.14 -30.69 -0.22 4.38 16 18 O -0.42 -6.39 15.86 5.57 0.09 -6.30 16 19 C -0.16 -1.43 5.87 -105.06 -0.62 -2.04 16 20 C -0.06 -0.52 9.60 -39.11 -0.38 -0.89 16 21 C -0.13 -0.84 10.03 -39.65 -0.40 -1.24 16 22 C -0.09 -0.49 10.04 -39.46 -0.40 -0.89 16 23 C -0.13 -0.73 10.03 -39.65 -0.40 -1.12 16 24 C -0.07 -0.48 9.47 -39.10 -0.37 -0.85 16 25 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 26 C -0.19 -4.11 9.99 -39.40 -0.39 -4.51 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.08 0.90 8.08 -51.92 -0.42 0.49 16 32 H 0.11 0.83 8.09 -51.92 -0.42 0.41 16 33 H 0.11 0.83 8.09 -51.92 -0.42 0.41 16 34 H 0.14 1.18 7.65 -52.49 -0.40 0.78 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 37 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 38 H 0.13 0.57 7.05 -52.49 -0.37 0.20 16 39 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -33.27 364.16 -10.12 -43.39 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.69 Total: 2.98 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -4.50 Total: -26.46 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.38 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.24 Total: -5.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.27 -10.12 -43.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473053470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.660 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds