Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48496 * 109.47176 * 239.99833 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46951 * 119.99783 * 3 2 1 7 7 C 1.38651 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99636 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99798 * 185.06213 * 9 7 2 11 11 C 1.38888 * 120.06798 * 354.45707 * 10 9 7 12 12 C 1.38090 * 119.92878 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.07155 * 0.02579 * 12 11 10 14 14 C 1.50699 * 119.93043 * 179.97438 * 13 12 11 15 15 S 1.81404 * 109.46908 * 90.00222 * 14 13 12 16 16 C 1.81396 * 103.00041 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47378 * 180.02562 * 16 15 14 18 18 O 1.21261 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.47165 * 120.00489 * 180.02562 * 17 16 15 20 20 C 1.39853 * 120.17767 * 179.97438 * 19 17 16 21 21 C 1.37884 * 119.82971 * 180.22847 * 20 19 17 22 22 C 1.38407 * 120.16726 * 359.47660 * 21 20 19 23 23 C 1.38403 * 120.35086 * 0.54418 * 22 21 20 24 24 C 1.37891 * 120.17187 * 359.70968 * 23 22 21 25 25 C 1.38304 * 120.13662 * 0.25411 * 13 12 11 26 26 C 1.38096 * 120.06572 * 359.44837 * 25 13 12 27 27 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03099 * 0.02562 * 11 10 9 29 29 H 1.08007 * 119.96686 * 180.02562 * 12 11 10 30 30 H 1.08997 * 109.47597 * 330.00359 * 14 13 12 31 31 H 1.09001 * 109.47266 * 209.99938 * 14 13 12 32 32 H 1.08999 * 109.47186 * 59.99628 * 16 15 14 33 33 H 1.09006 * 109.47541 * 299.99964 * 16 15 14 34 34 H 1.08000 * 120.08121 * 359.95214 * 20 19 17 35 35 H 1.07994 * 119.91627 * 179.74219 * 21 20 19 36 36 H 1.08004 * 119.82144 * 180.25608 * 22 21 20 37 37 H 1.07998 * 119.91658 * 179.72560 * 23 22 21 38 38 H 1.07994 * 120.08494 * 179.97438 * 24 23 22 39 39 H 1.07998 * 119.96114 * 179.70677 * 25 13 12 40 40 H 1.08006 * 120.03264 * 180.27849 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0016 10 6 2.0701 -3.5046 0.1047 11 6 3.4574 -3.4394 0.0922 12 6 4.2025 -4.5970 0.2000 13 6 3.5687 -5.8205 0.3196 14 6 4.3850 -7.0819 0.4364 15 16 4.7201 -7.4254 2.1858 16 6 5.6948 -8.9539 2.1221 17 6 6.0573 -9.3773 3.5222 18 8 5.6943 -8.7132 4.4696 19 6 6.8527 -10.5962 3.7398 20 6 7.1916 -10.9922 5.0375 21 6 7.9412 -12.1329 5.2328 22 6 8.3489 -12.8913 4.1492 23 6 8.0179 -12.5059 2.8618 24 6 7.2732 -11.3649 2.6497 25 6 2.1874 -5.8893 0.3265 26 6 1.4367 -4.7346 0.2253 27 1 -0.4850 0.8400 0.0004 28 1 3.9528 -2.4843 -0.0016 29 1 5.2814 -4.5470 0.1908 30 1 5.3276 -6.9553 -0.0960 31 1 3.8314 -7.9144 0.0022 32 1 6.6046 -8.7810 1.5474 33 1 5.1081 -9.7395 1.6458 34 1 6.8708 -10.4036 5.8843 35 1 8.2072 -12.4377 6.2341 36 1 8.9323 -13.7861 4.3089 37 1 8.3434 -13.1005 2.0210 38 1 7.0161 -11.0653 1.6445 39 1 1.6955 -6.8466 0.4153 40 1 0.3580 -4.7885 0.2353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473053470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = -30.891037 kcal Electronic energy + Delta-G solvation = -22598.657319 eV Core-core repulsion = 19048.684516 eV Total energy + Delta-G solvation = -3549.972804 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01698 -40.79393 -39.12596 -38.44538 -34.41819 -33.13716 -32.66259 -31.91575 -31.81577 -30.44659 -27.95954 -26.69838 -24.80695 -23.66119 -23.36811 -22.30449 -20.95380 -19.87273 -18.88514 -18.42637 -17.55067 -16.73791 -16.58308 -16.40214 -16.32793 -16.26489 -16.00880 -15.59946 -15.41331 -15.17757 -14.93461 -14.63570 -14.45762 -14.36402 -14.15259 -13.94571 -13.64668 -13.44999 -13.15451 -12.91017 -12.62240 -12.46874 -12.36037 -12.27207 -12.14087 -12.02442 -11.21018 -10.97037 -10.90191 -10.71919 -9.97155 -9.95468 -9.81695 -8.90735 -8.65115 -8.48488 -6.16581 -0.36062 0.15861 0.42321 0.57921 1.00625 1.34438 1.36414 1.45334 1.50833 1.72140 2.17057 2.82469 2.84314 2.87860 3.17158 3.49089 3.81112 3.89342 3.96865 4.01726 4.13165 4.13697 4.16808 4.23361 4.34609 4.35898 4.47185 4.55019 4.56279 4.64065 4.76121 4.89459 5.04032 5.06898 5.12637 5.26017 5.34258 5.45650 5.50803 5.52907 5.68332 5.72051 5.94918 6.00814 6.16701 6.39934 6.95766 7.75196 8.74201 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.001810 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.894464 B =15462.208526 C =15755.096211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.229 6.229 10 C 0.119 3.881 11 C -0.245 4.245 12 C -0.050 4.050 13 C -0.156 4.156 14 C -0.016 4.016 15 S -0.283 6.283 16 C -0.138 4.138 17 C 0.409 3.591 18 O -0.479 6.479 19 C -0.183 4.183 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.134 4.134 24 C -0.069 4.069 25 C -0.048 4.048 26 C -0.206 4.206 27 H 0.273 0.727 28 H 0.121 0.879 29 H 0.141 0.859 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.922 -28.385 2.540 34.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.136 6.136 10 C 0.067 3.933 11 C -0.264 4.264 12 C -0.070 4.070 13 C -0.158 4.158 14 C -0.163 4.163 15 S -0.054 6.054 16 C -0.286 4.286 17 C 0.288 3.712 18 O -0.356 6.356 19 C -0.186 4.186 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.104 4.104 23 C -0.152 4.152 24 C -0.087 4.087 25 C -0.068 4.068 26 C -0.226 4.226 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.026 -27.316 3.912 33.518 hybrid contribution 0.096 0.623 -0.752 0.981 sum 19.122 -26.693 3.160 32.987 Atomic orbital electron populations 1.70179 1.08012 1.28923 1.48544 1.26610 0.96876 1.02768 0.95748 0.84649 0.77415 0.74229 0.79936 1.17919 1.19525 1.18392 1.21800 0.92564 0.81408 1.53404 0.88051 1.83942 1.36018 1.12627 1.80993 1.19981 0.91657 0.87989 0.93624 1.21250 0.93071 1.00075 1.12025 1.20962 0.99946 0.90824 0.95273 1.19064 0.93303 0.93852 1.09590 1.22137 1.03055 0.97872 0.93198 1.88357 1.70739 1.32748 1.13530 1.24011 1.05286 0.99437 0.99873 1.22293 0.75849 0.83466 0.89629 1.90587 1.46246 1.52924 1.45855 1.20351 1.04635 0.97942 0.95629 1.21528 0.95764 0.96594 0.96279 1.21424 0.98541 0.94735 1.01013 1.21876 0.96690 0.99353 0.92445 1.21589 0.98338 0.96868 0.98370 1.21798 0.94588 0.93607 0.98744 1.20902 0.93190 0.97161 0.95524 1.20456 1.00090 0.90500 1.11532 0.91783 0.86148 0.84099 0.87444 0.87190 0.83788 0.83713 0.86529 0.83757 0.82769 0.82319 0.82349 0.83279 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.09 13.67 21.61 0.30 -56.79 16 2 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 3 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.42 -24.62 9.49 67.92 0.64 -23.98 16 8 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.08 9.76 -22.76 -0.22 -14.31 16 10 C 0.12 6.06 6.65 22.58 0.15 6.21 16 11 C -0.24 -10.90 9.17 22.39 0.21 -10.70 16 12 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 13 C -0.16 -4.87 5.14 -19.83 -0.10 -4.98 16 14 C -0.02 -0.34 6.07 71.24 0.43 0.09 16 15 S -0.28 -7.41 20.86 -56.49 -1.18 -8.59 16 16 C -0.14 -2.11 5.04 71.23 0.36 -1.75 16 17 C 0.41 8.54 7.14 28.03 0.20 8.74 16 18 O -0.48 -14.72 15.86 -2.97 -0.05 -14.76 16 19 C -0.18 -2.91 5.87 -20.15 -0.12 -3.03 16 20 C -0.08 -1.38 9.60 22.58 0.22 -1.16 16 21 C -0.14 -1.52 10.03 22.23 0.22 -1.30 16 22 C -0.09 -0.61 10.04 22.35 0.22 -0.39 16 23 C -0.13 -0.85 10.03 22.23 0.22 -0.63 16 24 C -0.07 -0.61 9.47 22.58 0.21 -0.40 16 25 C -0.05 -1.64 9.69 22.25 0.22 -1.43 16 26 C -0.21 -9.00 9.99 22.39 0.22 -8.77 16 27 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 29 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.11 1.80 8.08 -2.39 -0.02 1.78 16 31 H 0.11 1.80 8.08 -2.39 -0.02 1.78 16 32 H 0.14 1.33 8.09 -2.39 -0.02 1.31 16 33 H 0.15 1.31 8.09 -2.39 -0.02 1.30 16 34 H 0.12 2.23 7.65 -2.91 -0.02 2.21 16 35 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.15 0.23 8.06 -2.91 -0.02 0.21 16 37 H 0.16 0.09 8.06 -2.91 -0.02 0.06 16 38 H 0.16 0.45 7.05 -2.91 -0.02 0.43 16 39 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -81.65 364.16 5.93 -75.73 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.06 Total: 19.06 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.99 Total: -45.83 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.27 Total: -29.07 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.18 Total: -8.59 kcal Total: -81.65 5.93 -75.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473053470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.837 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds