Wall clock time and date at job start Tue Mar 31 2020 15:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 120.00043 * 2 1 4 4 C 1.38216 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.38216 * 120.00034 * 359.70332 * 5 4 3 7 7 C 1.38210 * 119.99896 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00131 * 0.02562 * 7 2 1 9 9 O 1.45198 * 109.47345 * 179.97438 * 8 7 2 10 10 C 1.34701 * 117.00226 * 179.97438 * 9 8 7 11 11 O 1.21471 * 120.00026 * 0.02562 * 10 9 8 12 12 C 1.47750 * 120.00274 * 180.02562 * 10 9 8 13 13 C 1.39733 * 120.10169 * 359.73454 * 12 10 9 14 14 C 1.38029 * 120.02741 * 179.73860 * 13 12 10 15 15 C 1.38187 * 120.24951 * 0.51454 * 14 13 12 16 16 C 1.39182 * 120.21572 * 359.75825 * 15 14 13 17 17 S 1.76194 * 120.01937 * 179.97438 * 16 15 14 18 18 C 1.76204 * 99.99846 * 265.52935 * 17 16 15 19 19 H 1.07997 * 119.99996 * 5.11944 * 18 17 16 20 20 C 1.38731 * 119.99875 * 185.12081 * 18 17 16 21 21 N 1.31618 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46872 * 59.99709 * 22 20 18 24 24 H 1.48498 * 109.47146 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47238 * 300.00141 * 22 20 18 26 26 C 1.38870 * 119.96236 * 359.97438 * 16 15 14 27 27 H 1.08998 * 109.46843 * 270.02461 * 1 2 3 28 28 H 1.09002 * 109.46812 * 30.02497 * 1 2 3 29 29 H 1.08997 * 109.47121 * 150.02453 * 1 2 3 30 30 H 1.08001 * 120.00016 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.99866 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.99907 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.00303 * 180.29480 * 6 5 4 34 34 H 1.09002 * 109.46688 * 59.99948 * 8 7 2 35 35 H 1.09003 * 109.47059 * 299.99866 * 8 7 2 36 36 H 1.07994 * 119.98419 * 359.97059 * 13 12 10 37 37 H 1.08001 * 119.86960 * 180.25193 * 14 13 12 38 38 H 1.08001 * 119.88961 * 179.74356 * 15 14 13 39 39 H 0.97004 * 120.00695 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.11940 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0005 9 8 2.3881 -3.6057 0.0005 10 6 1.8732 -4.8504 0.0011 11 8 0.6690 -5.0096 0.0011 12 6 2.7732 -6.0222 0.0017 13 6 4.1588 -5.8417 -0.0039 14 6 4.9982 -6.9374 0.0021 15 6 4.4739 -8.2159 0.0030 16 6 3.0953 -8.4077 0.0028 17 16 2.4324 -10.0402 0.0032 18 6 2.1923 -10.2733 -1.7268 19 1 2.5293 -9.5213 -2.4248 20 6 1.5703 -11.4227 -2.1920 21 7 1.1600 -12.3394 -1.3413 22 14 1.3150 -11.6695 -4.0260 23 1 2.6315 -11.6706 -4.7132 24 1 0.6335 -12.9679 -4.2606 25 1 0.4777 -10.5664 -4.5621 26 6 2.2426 -7.3116 0.0024 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3517 0.0001 0.0005 33 1 4.1206 -2.1323 0.0110 34 1 0.8183 -2.5599 -0.8897 35 1 0.8176 -2.5596 0.8903 36 1 4.5731 -4.8444 -0.0092 37 1 6.0687 -6.7949 0.0019 38 1 5.1360 -9.0692 0.0035 39 1 0.7254 -13.1433 -1.6666 40 1 1.1726 -7.4575 0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521628410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:13 Heat of formation + Delta-G solvation = -46.471972 kcal Electronic energy + Delta-G solvation = -23456.617808 eV Core-core repulsion = 19905.969364 eV Total energy + Delta-G solvation = -3550.648444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62179 -39.62459 -38.25076 -36.39864 -33.43158 -32.53617 -32.08582 -31.02903 -30.60822 -27.70888 -26.52750 -25.59730 -24.11938 -22.48081 -22.15234 -21.09750 -20.64731 -18.38122 -17.41327 -17.28414 -16.53884 -16.52249 -15.68390 -15.41874 -15.11235 -14.87649 -14.66902 -14.45587 -14.43504 -13.69868 -13.50989 -13.39131 -13.33688 -12.98732 -12.68059 -12.57379 -12.40099 -12.23189 -11.68494 -11.30318 -11.25516 -11.20140 -11.14827 -11.09452 -10.94157 -10.74395 -10.42671 -9.96456 -9.18628 -9.07963 -9.06416 -8.88660 -8.73000 -8.08212 -6.75440 -6.31214 -4.05943 0.96677 1.00631 1.11232 1.60436 2.52747 2.70808 3.17293 3.21312 3.24908 3.41872 3.44373 4.00178 4.20709 4.33522 4.51319 4.60205 4.77449 4.81960 4.94487 5.05010 5.05453 5.06985 5.13645 5.26897 5.28366 5.30912 5.41968 5.43759 5.51930 5.64739 5.73271 5.77397 5.84071 5.91449 6.11060 6.16450 6.22037 6.29355 6.42060 6.52165 6.60500 6.70386 6.85973 7.10480 7.54603 7.81912 8.29597 9.14491 10.75386 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.002398 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.674143 B =11675.920018 C =12255.263371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.094 4.094 7 C -0.092 4.092 8 C 0.111 3.889 9 O -0.352 6.352 10 C 0.515 3.485 11 O -0.504 6.504 12 C -0.144 4.144 13 C -0.065 4.065 14 C -0.147 4.147 15 C -0.044 4.044 16 C -0.112 4.112 17 S -0.031 6.031 18 C -0.522 4.522 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.014 4.014 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.271 0.729 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 24.576 3.368 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.112 4.112 7 C -0.092 4.092 8 C 0.037 3.963 9 O -0.270 6.270 10 C 0.360 3.640 11 O -0.393 6.393 12 C -0.147 4.147 13 C -0.084 4.084 14 C -0.166 4.166 15 C -0.065 4.065 16 C -0.222 4.222 17 S 0.203 5.797 18 C -0.669 4.669 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.035 4.035 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.573 23.590 4.264 24.405 hybrid contribution -0.032 0.827 -2.144 2.298 sum 4.541 24.417 2.120 24.926 Atomic orbital electron populations 1.20886 0.91005 1.03253 1.02769 1.19609 0.96100 0.92133 0.99990 1.20961 0.94300 0.97141 1.01442 1.21173 0.94300 0.98163 0.99882 1.21183 1.00075 0.92375 1.00732 1.21065 0.93416 0.98775 0.97927 1.19474 0.94369 0.92666 1.02699 1.21687 0.89967 0.81431 1.03198 1.86476 1.40692 1.14990 1.84795 1.21326 0.87480 0.82697 0.72489 1.90841 1.16138 1.86461 1.45856 1.19097 0.92908 0.90569 1.12094 1.21336 0.91857 0.99330 0.95870 1.21139 0.99699 0.92456 1.03340 1.22056 0.94922 0.97096 0.92470 1.22822 0.95415 1.01961 1.02040 1.83639 1.80607 1.02990 1.12415 1.22802 1.45503 1.08452 0.90191 0.90627 1.25002 0.94297 0.94959 0.99265 1.69969 1.37332 1.08680 1.34517 0.86176 0.78718 0.77706 0.82727 1.19790 1.20708 1.19788 1.21980 1.01075 0.89420 0.91015 0.90715 0.91154 0.91210 0.85864 0.86037 0.85851 0.84839 0.89721 0.89736 0.85242 0.85518 0.84815 0.91951 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.60 36.01 0.35 -0.53 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 5 C -0.13 -1.08 10.05 -39.59 -0.40 -1.48 16 6 C -0.09 -0.95 9.38 -39.58 -0.37 -1.32 16 7 C -0.09 -0.97 5.88 -104.62 -0.62 -1.58 16 8 C 0.11 1.28 4.58 36.01 0.16 1.44 16 9 O -0.35 -4.77 7.94 -40.49 -0.32 -5.09 16 10 C 0.51 8.46 7.90 34.62 0.27 8.73 16 11 O -0.50 -9.51 16.13 -19.24 -0.31 -9.82 16 12 C -0.14 -2.44 5.87 -105.01 -0.62 -3.06 16 13 C -0.07 -0.93 9.62 -39.10 -0.38 -1.31 16 14 C -0.15 -2.09 10.02 -39.68 -0.40 -2.48 16 15 C -0.04 -0.78 9.79 -39.25 -0.38 -1.16 16 16 C -0.11 -2.34 5.45 -39.00 -0.21 -2.56 16 17 S -0.03 -0.79 21.41 -107.50 -2.30 -3.09 16 18 C -0.52 -14.55 9.46 30.91 0.29 -14.26 16 19 H 0.08 2.08 7.79 -52.49 -0.41 1.67 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.21 13.22 55.49 0.73 -24.48 16 22 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.01 -0.27 9.34 -38.90 -0.36 -0.64 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.52 6.64 -51.93 -0.34 0.17 16 30 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.32 6.99 -52.48 -0.37 0.95 16 34 H 0.08 0.96 7.49 -51.93 -0.39 0.57 16 35 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.13 1.47 7.60 -52.49 -0.40 1.07 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.14 2.98 7.65 -52.49 -0.40 2.58 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -31.57 364.75 -10.70 -42.27 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.82 Total: 0.71 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -4.15 Total: -22.26 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.73 Total: -24.48 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.63 Total: -14.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.57 -10.70 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521628410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.198 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds