Wall clock time and date at job start Tue Mar 31 2020 15:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 120.00043 * 2 1 4 4 C 1.38216 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.38216 * 120.00034 * 359.70332 * 5 4 3 7 7 C 1.38210 * 119.99896 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00131 * 0.02562 * 7 2 1 9 9 O 1.45198 * 109.47345 * 179.97438 * 8 7 2 10 10 C 1.34701 * 117.00226 * 179.97438 * 9 8 7 11 11 O 1.21471 * 120.00026 * 0.02562 * 10 9 8 12 12 C 1.47750 * 120.00274 * 180.02562 * 10 9 8 13 13 C 1.39733 * 120.10169 * 359.73454 * 12 10 9 14 14 C 1.38029 * 120.02741 * 179.73860 * 13 12 10 15 15 C 1.38187 * 120.24951 * 0.51454 * 14 13 12 16 16 C 1.39182 * 120.21572 * 359.75825 * 15 14 13 17 17 S 1.76194 * 120.01937 * 179.97438 * 16 15 14 18 18 C 1.76204 * 99.99846 * 265.52935 * 17 16 15 19 19 H 1.07997 * 119.99996 * 5.11944 * 18 17 16 20 20 C 1.38731 * 119.99875 * 185.12081 * 18 17 16 21 21 N 1.31618 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46872 * 59.99709 * 22 20 18 24 24 H 1.48498 * 109.47146 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47238 * 300.00141 * 22 20 18 26 26 C 1.38870 * 119.96236 * 359.97438 * 16 15 14 27 27 H 1.08998 * 109.46843 * 270.02461 * 1 2 3 28 28 H 1.09002 * 109.46812 * 30.02497 * 1 2 3 29 29 H 1.08997 * 109.47121 * 150.02453 * 1 2 3 30 30 H 1.08001 * 120.00016 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.99866 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.99907 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.00303 * 180.29480 * 6 5 4 34 34 H 1.09002 * 109.46688 * 59.99948 * 8 7 2 35 35 H 1.09003 * 109.47059 * 299.99866 * 8 7 2 36 36 H 1.07994 * 119.98419 * 359.97059 * 13 12 10 37 37 H 1.08001 * 119.86960 * 180.25193 * 14 13 12 38 38 H 1.08001 * 119.88961 * 179.74356 * 15 14 13 39 39 H 0.97004 * 120.00695 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.11940 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0005 9 8 2.3881 -3.6057 0.0005 10 6 1.8732 -4.8504 0.0011 11 8 0.6690 -5.0096 0.0011 12 6 2.7732 -6.0222 0.0017 13 6 4.1588 -5.8417 -0.0039 14 6 4.9982 -6.9374 0.0021 15 6 4.4739 -8.2159 0.0030 16 6 3.0953 -8.4077 0.0028 17 16 2.4324 -10.0402 0.0032 18 6 2.1923 -10.2733 -1.7268 19 1 2.5293 -9.5213 -2.4248 20 6 1.5703 -11.4227 -2.1920 21 7 1.1600 -12.3394 -1.3413 22 14 1.3150 -11.6695 -4.0260 23 1 2.6315 -11.6706 -4.7132 24 1 0.6335 -12.9679 -4.2606 25 1 0.4777 -10.5664 -4.5621 26 6 2.2426 -7.3116 0.0024 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3517 0.0001 0.0005 33 1 4.1206 -2.1323 0.0110 34 1 0.8183 -2.5599 -0.8897 35 1 0.8176 -2.5596 0.8903 36 1 4.5731 -4.8444 -0.0092 37 1 6.0687 -6.7949 0.0019 38 1 5.1360 -9.0692 0.0035 39 1 0.7254 -13.1433 -1.6666 40 1 1.1726 -7.4575 0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521628410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:12 Heat of formation + Delta-G solvation = -60.994815 kcal Electronic energy + Delta-G solvation = -23457.247566 eV Core-core repulsion = 19905.969364 eV Total energy + Delta-G solvation = -3551.278201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81488 -40.41337 -39.54703 -37.62682 -34.65817 -34.09101 -32.94812 -32.24022 -31.97900 -28.44186 -27.74649 -27.27577 -25.34827 -23.79252 -23.02792 -21.88015 -21.76485 -20.06267 -19.04782 -18.39864 -17.67893 -17.45273 -16.93676 -16.87244 -16.36386 -16.17155 -15.80615 -15.63923 -15.35581 -15.05886 -14.65251 -14.54268 -14.27864 -13.97020 -13.83516 -13.58696 -13.26958 -13.17833 -13.12442 -12.96535 -12.92083 -12.70849 -12.42808 -12.04823 -11.93151 -11.85871 -11.81882 -11.69546 -11.22321 -10.80973 -10.09174 -9.75721 -9.72705 -9.54042 -8.81957 -8.39765 -6.20068 -0.39021 0.19256 0.34479 0.46677 1.26088 1.34805 1.38778 1.38949 1.46455 1.68962 2.22843 2.68157 2.79532 2.93514 3.39879 3.42515 3.65929 3.88581 3.91941 4.02247 4.04991 4.12997 4.14888 4.23713 4.30703 4.40324 4.43604 4.58124 4.67975 4.75348 4.83416 4.84625 4.90548 5.02958 5.11647 5.17242 5.28203 5.30026 5.37943 5.44120 5.56991 5.62798 5.64216 5.79150 6.08433 6.15169 6.55043 7.00772 8.66990 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.002398 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.674143 B =11675.920018 C =12255.263371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.112 4.112 8 C 0.110 3.890 9 O -0.339 6.339 10 C 0.520 3.480 11 O -0.537 6.537 12 C -0.149 4.149 13 C -0.042 4.042 14 C -0.125 4.125 15 C -0.048 4.048 16 C -0.133 4.133 17 S -0.087 6.087 18 C -0.538 4.538 19 H 0.069 0.931 20 C 0.021 3.979 21 N -0.905 5.905 22 Si 0.990 3.010 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.034 4.034 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.141 0.859 39 H 0.274 0.726 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 27.767 2.498 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.149 4.149 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.037 3.963 9 O -0.255 6.255 10 C 0.366 3.634 11 O -0.428 6.428 12 C -0.152 4.152 13 C -0.060 4.060 14 C -0.144 4.144 15 C -0.069 4.069 16 C -0.244 4.244 17 S 0.148 5.852 18 C -0.685 4.685 19 H 0.087 0.913 20 C -0.185 4.185 21 N -0.541 5.541 22 Si 0.812 3.188 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.056 4.056 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.189 0.811 37 H 0.196 0.804 38 H 0.159 0.841 39 H 0.083 0.917 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.942 26.802 3.407 27.895 hybrid contribution -0.673 0.070 -1.795 1.919 sum 6.269 26.873 1.611 27.641 Atomic orbital electron populations 1.20925 0.90101 1.03672 1.03270 1.19853 0.96993 0.92115 0.99799 1.21295 0.94765 0.97582 1.00642 1.21547 0.94444 0.99040 0.98528 1.21459 1.01207 0.92052 1.00170 1.21192 0.93316 0.99568 0.98786 1.19483 0.94790 0.92257 1.04653 1.21835 0.89957 0.81327 1.03184 1.86446 1.40814 1.14262 1.84026 1.21246 0.86844 0.83496 0.71767 1.90828 1.17539 1.87031 1.47423 1.19142 0.94527 0.89410 1.12103 1.21828 0.90215 1.01451 0.92543 1.21603 1.02128 0.90364 1.00280 1.22191 0.93196 0.99320 0.92201 1.22480 0.97088 0.98947 1.05856 1.83527 1.81802 1.07819 1.12101 1.23048 1.45674 1.08594 0.91211 0.91327 1.25988 0.93782 0.94490 1.04222 1.70091 1.38113 1.09245 1.36701 0.85121 0.79081 0.77884 0.76714 1.18549 1.19620 1.19543 1.21669 0.99721 0.90934 0.93235 0.90138 0.89564 0.91993 0.83651 0.83521 0.83871 0.84913 0.89975 0.89757 0.81115 0.80444 0.84103 0.91667 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.60 71.24 0.68 -0.93 16 2 C -0.09 -1.45 5.88 -19.87 -0.12 -1.57 16 3 C -0.13 -1.69 9.70 22.27 0.22 -1.47 16 4 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 5 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 6 C -0.11 -2.02 9.38 22.27 0.21 -1.81 16 7 C -0.11 -2.21 5.88 -19.87 -0.12 -2.33 16 8 C 0.11 2.50 4.58 71.24 0.33 2.83 16 9 O -0.34 -8.78 7.94 -56.11 -0.45 -9.23 16 10 C 0.52 17.04 7.90 70.34 0.56 17.59 16 11 O -0.54 -20.98 16.13 19.93 0.32 -20.66 16 12 C -0.15 -4.97 5.87 -20.11 -0.12 -5.09 16 13 C -0.04 -1.06 9.62 22.58 0.22 -0.84 16 14 C -0.12 -3.04 10.02 22.21 0.22 -2.82 16 15 C -0.05 -1.64 9.79 22.48 0.22 -1.42 16 16 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 17 S -0.09 -4.68 21.41 -56.49 -1.21 -5.89 16 18 C -0.54 -31.16 9.46 67.94 0.64 -30.51 16 19 H 0.07 3.92 7.79 -2.91 -0.02 3.89 16 20 C 0.02 1.17 5.49 84.84 0.47 1.64 16 21 N -0.91 -54.16 13.22 21.64 0.29 -53.87 16 22 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C -0.03 -1.43 9.34 22.71 0.21 -1.22 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.06 0.90 6.64 -2.39 -0.02 0.88 16 30 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.13 2.31 6.99 -2.91 -0.02 2.29 16 34 H 0.08 1.88 7.49 -2.39 -0.02 1.87 16 35 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 36 H 0.17 2.94 7.60 -2.91 -0.02 2.92 16 37 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.11 5.15 7.65 -2.91 -0.02 5.13 16 Total: -1.00 -72.65 364.75 6.22 -66.43 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.05 Total: 13.43 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 4.19 Total: -36.48 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.29 Total: -53.87 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.12 Total: -29.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -1.21 Total: -5.89 kcal Total: -72.65 6.22 -66.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521628410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.432 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds