Wall clock time and date at job start Tue Mar 31 2020 14:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48498 * 109.46685 * 269.99827 * 3 2 1 5 5 H 1.48492 * 109.47132 * 29.99981 * 3 2 1 6 6 H 1.48494 * 109.46984 * 150.00127 * 3 2 1 7 7 C 1.37874 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99879 * 174.95968 * 7 2 1 9 9 C 1.50698 * 120.00245 * 354.95981 * 7 2 1 10 10 O 1.42904 * 112.85061 * 64.95654 * 9 7 2 11 11 C 1.34931 * 116.99566 * 54.53618 * 10 9 7 12 12 O 1.21640 * 120.00109 * 355.19494 * 11 10 9 13 13 C 1.46303 * 119.99413 * 175.20252 * 11 10 9 14 14 C 1.36753 * 125.17272 * 179.97438 * 13 11 10 15 15 C 1.36769 * 114.70677 * 180.02562 * 14 13 11 16 16 C 1.36492 * 114.78876 * 0.02562 * 15 14 13 17 17 C 1.47785 * 125.14404 * 180.02562 * 16 15 14 18 18 C 1.39594 * 120.14620 * 359.71839 * 17 16 15 19 19 C 1.37962 * 119.84831 * 179.72068 * 18 17 16 20 20 C 1.38365 * 120.14390 * 0.55822 * 19 18 17 21 21 C 1.38358 * 120.29724 * 359.71935 * 20 19 18 22 22 C 1.37950 * 120.15368 * 0.02562 * 21 20 19 23 23 S 1.75829 * 109.70890 * 359.97438 * 16 15 14 24 24 C 1.53783 * 113.69387 * 196.22751 * 9 7 2 25 25 C 1.53772 * 87.08225 * 89.12606 * 24 9 7 26 26 C 1.53777 * 113.61614 * 293.76190 * 9 7 2 27 27 H 0.96998 * 119.99915 * 4.99627 * 1 2 3 28 28 H 1.07999 * 122.64664 * 359.97438 * 14 13 11 29 29 H 1.08002 * 122.60560 * 180.26426 * 15 14 13 30 30 H 1.07997 * 120.07845 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.92704 * 180.27648 * 19 18 17 32 32 H 1.07996 * 119.84945 * 179.73912 * 20 19 18 33 33 H 1.08002 * 119.92428 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.08097 * 180.02562 * 22 21 20 35 35 H 1.09001 * 113.61624 * 203.68139 * 24 9 7 36 36 H 1.08998 * 113.61251 * 334.57539 * 24 9 7 37 37 H 1.09001 * 113.62120 * 270.88829 * 25 24 9 38 38 H 1.09003 * 113.69132 * 139.98975 * 25 24 9 39 39 H 1.09002 * 113.61475 * 25.34573 * 26 9 7 40 40 H 1.09003 * 113.61421 * 156.16731 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1959 -0.0816 9 6 1.2554 -2.4966 0.1158 10 8 0.4069 -2.7499 -1.0059 11 6 0.9803 -2.7191 -2.2269 12 8 2.1479 -2.3980 -2.3427 13 6 0.1976 -3.0719 -3.4116 14 6 0.6698 -3.0764 -4.6950 15 6 -0.2485 -3.4414 -5.6406 16 6 -1.4865 -3.7412 -5.1504 17 6 -2.6455 -4.1612 -5.9656 18 6 -2.5243 -4.2720 -7.3518 19 6 -3.6085 -4.6701 -8.1062 20 6 -4.8172 -4.9482 -7.4929 21 6 -4.9457 -4.8348 -6.1200 22 6 -3.8681 -4.4428 -5.3532 23 16 -1.4935 -3.5536 -3.4022 24 6 2.1468 -3.6906 0.4959 25 6 1.8614 -3.3353 1.9646 26 6 0.5566 -2.6874 1.4722 27 1 -0.4850 0.8368 -0.0732 28 1 1.6872 -2.8118 -4.9425 29 1 -0.0113 -3.4923 -6.6930 30 1 -1.5827 -4.0504 -7.8322 31 1 -3.5149 -4.7606 -9.1784 32 1 -5.6641 -5.2555 -8.0886 33 1 -5.8919 -5.0538 -5.6475 34 1 -3.9696 -4.3551 -4.2816 35 1 1.7384 -4.6545 0.1925 36 1 3.1913 -3.5638 0.2111 37 1 2.5701 -2.6231 2.3873 38 1 1.7034 -4.2047 2.6028 39 1 0.3171 -1.7507 1.9757 40 1 -0.2876 -3.3760 1.4354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525397665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:42 Heat of formation + Delta-G solvation = -3.828831 kcal Electronic energy + Delta-G solvation = -24477.800657 eV Core-core repulsion = 20929.001359 eV Total energy + Delta-G solvation = -3548.799298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.45665 -39.30277 -37.60490 -36.52443 -34.21902 -32.29683 -32.20239 -31.15574 -28.52540 -26.20605 -25.13145 -24.57165 -23.35491 -22.73666 -21.94900 -20.93053 -18.66321 -18.54414 -17.96028 -16.95198 -16.29457 -15.65870 -15.31335 -15.06556 -14.86503 -14.71600 -14.35820 -14.09900 -13.88472 -13.59918 -13.43056 -13.07398 -12.72952 -12.44701 -12.14564 -12.00728 -11.60742 -11.53824 -11.27257 -11.16810 -11.02312 -10.87438 -10.54702 -10.46597 -10.27491 -10.00245 -9.81975 -9.63088 -9.46290 -9.15778 -8.80938 -8.52710 -8.51303 -8.38190 -7.89336 -6.09172 -4.18355 0.25537 1.21019 1.49144 1.66016 2.13907 2.69397 3.28701 3.35112 3.39150 3.70708 3.85576 3.99794 4.38268 4.49313 4.71019 4.76407 4.92081 5.20780 5.21999 5.27954 5.43948 5.59052 5.65085 5.69623 5.76204 5.82935 5.88717 6.01601 6.08549 6.24004 6.30178 6.30363 6.36128 6.47474 6.55012 6.58610 6.63431 6.76375 6.87344 7.09859 7.30843 7.55179 7.76067 7.89355 8.33819 8.82578 9.15892 9.49358 10.95600 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003178 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.329599 B = 8808.410121 C = 9162.058270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.237 3.763 10 O -0.337 6.337 11 C 0.530 3.470 12 O -0.483 6.483 13 C -0.210 4.210 14 C -0.078 4.078 15 C -0.131 4.131 16 C -0.166 4.166 17 C -0.006 4.006 18 C -0.104 4.104 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.114 4.114 23 S 0.221 5.779 24 C -0.164 4.164 25 C -0.129 4.129 26 C -0.106 4.106 27 H 0.263 0.737 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 -9.994 -11.993 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.131 4.131 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.086 0.914 9 C 0.203 3.797 10 O -0.253 6.253 11 C 0.371 3.629 12 O -0.372 6.372 13 C -0.329 4.329 14 C -0.110 4.110 15 C -0.162 4.162 16 C -0.285 4.285 17 C -0.008 4.008 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.131 4.131 22 C -0.133 4.133 23 S 0.492 5.508 24 C -0.202 4.202 25 C -0.167 4.167 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.411 -9.938 -10.658 17.347 hybrid contribution 1.592 1.280 -1.216 2.378 sum -7.819 -8.657 -11.874 16.645 Atomic orbital electron populations 1.70015 1.05805 1.27077 1.47503 1.25034 0.94877 0.99292 0.93930 0.86554 0.80018 0.83023 0.78351 1.20517 1.21070 1.19552 1.20948 0.93605 0.88604 1.51284 0.91396 1.20835 0.86712 0.92308 0.79893 1.86118 1.45093 1.79834 1.14237 1.19230 0.85038 0.75449 0.83153 1.90802 1.16900 1.42593 1.86933 1.24244 0.98232 1.13413 0.97039 1.20440 1.01491 0.99179 0.89854 1.20291 0.91513 1.03699 1.00740 1.23811 0.97203 1.09377 0.98111 1.18091 0.91181 0.99034 0.92528 1.21218 0.99239 0.99522 0.92427 1.21076 0.92967 0.99551 0.99871 1.21225 0.97686 1.00418 0.94840 1.21057 0.98543 0.99521 0.93993 1.21296 0.92285 0.99605 1.00076 1.84249 1.06693 1.60731 0.99128 1.23603 1.01032 0.98694 0.96892 1.22498 0.99316 0.99446 0.95428 1.22888 0.95108 1.00084 0.96269 0.92764 0.83083 0.83876 0.85544 0.85775 0.86007 0.85673 0.85758 0.92093 0.91978 0.90185 0.92965 0.90465 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.61 12.53 55.43 0.69 -23.91 16 2 C 0.07 2.05 5.24 -17.82 -0.09 1.96 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.11 6.23 -34.44 -0.21 -14.32 16 8 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 9 C 0.24 6.00 0.47 -90.96 -0.04 5.95 16 10 O -0.34 -8.58 9.63 -41.13 -0.40 -8.97 16 11 C 0.53 12.90 7.53 33.97 0.26 13.16 16 12 O -0.48 -12.83 15.12 -19.37 -0.29 -13.13 16 13 C -0.21 -4.16 6.43 -36.88 -0.24 -4.40 16 14 C -0.08 -1.31 9.88 -40.65 -0.40 -1.71 16 15 C -0.13 -1.82 9.66 -40.74 -0.39 -2.22 16 16 C -0.17 -2.37 6.41 -36.31 -0.23 -2.60 16 17 C -0.01 -0.08 5.87 -104.98 -0.62 -0.70 16 18 C -0.10 -1.08 9.55 -39.18 -0.37 -1.45 16 19 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 20 C -0.12 -1.05 10.04 -39.49 -0.40 -1.45 16 21 C -0.11 -1.06 10.03 -39.64 -0.40 -1.46 16 22 C -0.11 -1.30 9.60 -39.18 -0.38 -1.67 16 23 S 0.22 3.65 22.03 -107.50 -2.37 1.28 16 24 C -0.16 -3.62 7.24 -25.92 -0.19 -3.81 16 25 C -0.13 -2.60 7.80 -25.92 -0.20 -2.80 16 26 C -0.11 -2.42 7.18 -25.92 -0.19 -2.61 16 27 H 0.26 7.13 8.32 -40.82 -0.34 6.80 16 28 H 0.15 2.42 8.03 -52.49 -0.42 1.99 16 29 H 0.14 1.52 6.91 -52.49 -0.36 1.16 16 30 H 0.13 1.10 6.76 -52.49 -0.35 0.75 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.37 7.27 -52.49 -0.38 0.99 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.90 7.63 -51.93 -0.40 1.51 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -31.62 356.93 -11.34 -42.96 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.84 Total: 1.23 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -4.49 Total: -21.55 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.69 Total: -23.91 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.69 Total: -22.10 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.37 Total: 1.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.62 -11.34 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525397665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.132 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds