Wall clock time and date at job start Tue Mar 31 2020 14:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48498 * 109.46685 * 269.99827 * 3 2 1 5 5 H 1.48492 * 109.47132 * 29.99981 * 3 2 1 6 6 H 1.48494 * 109.46984 * 150.00127 * 3 2 1 7 7 C 1.37874 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99879 * 174.95968 * 7 2 1 9 9 C 1.50698 * 120.00245 * 354.95981 * 7 2 1 10 10 O 1.42904 * 112.85061 * 64.95654 * 9 7 2 11 11 C 1.34931 * 116.99566 * 54.53618 * 10 9 7 12 12 O 1.21640 * 120.00109 * 355.19494 * 11 10 9 13 13 C 1.46303 * 119.99413 * 175.20252 * 11 10 9 14 14 C 1.36753 * 125.17272 * 179.97438 * 13 11 10 15 15 C 1.36769 * 114.70677 * 180.02562 * 14 13 11 16 16 C 1.36492 * 114.78876 * 0.02562 * 15 14 13 17 17 C 1.47785 * 125.14404 * 180.02562 * 16 15 14 18 18 C 1.39594 * 120.14620 * 359.71839 * 17 16 15 19 19 C 1.37962 * 119.84831 * 179.72068 * 18 17 16 20 20 C 1.38365 * 120.14390 * 0.55822 * 19 18 17 21 21 C 1.38358 * 120.29724 * 359.71935 * 20 19 18 22 22 C 1.37950 * 120.15368 * 0.02562 * 21 20 19 23 23 S 1.75829 * 109.70890 * 359.97438 * 16 15 14 24 24 C 1.53783 * 113.69387 * 196.22751 * 9 7 2 25 25 C 1.53772 * 87.08225 * 89.12606 * 24 9 7 26 26 C 1.53777 * 113.61614 * 293.76190 * 9 7 2 27 27 H 0.96998 * 119.99915 * 4.99627 * 1 2 3 28 28 H 1.07999 * 122.64664 * 359.97438 * 14 13 11 29 29 H 1.08002 * 122.60560 * 180.26426 * 15 14 13 30 30 H 1.07997 * 120.07845 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.92704 * 180.27648 * 19 18 17 32 32 H 1.07996 * 119.84945 * 179.73912 * 20 19 18 33 33 H 1.08002 * 119.92428 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.08097 * 180.02562 * 22 21 20 35 35 H 1.09001 * 113.61624 * 203.68139 * 24 9 7 36 36 H 1.08998 * 113.61251 * 334.57539 * 24 9 7 37 37 H 1.09001 * 113.62120 * 270.88829 * 25 24 9 38 38 H 1.09003 * 113.69132 * 139.98975 * 25 24 9 39 39 H 1.09002 * 113.61475 * 25.34573 * 26 9 7 40 40 H 1.09003 * 113.61421 * 156.16731 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1959 -0.0816 9 6 1.2554 -2.4966 0.1158 10 8 0.4069 -2.7499 -1.0059 11 6 0.9803 -2.7191 -2.2269 12 8 2.1479 -2.3980 -2.3427 13 6 0.1976 -3.0719 -3.4116 14 6 0.6698 -3.0764 -4.6950 15 6 -0.2485 -3.4414 -5.6406 16 6 -1.4865 -3.7412 -5.1504 17 6 -2.6455 -4.1612 -5.9656 18 6 -2.5243 -4.2720 -7.3518 19 6 -3.6085 -4.6701 -8.1062 20 6 -4.8172 -4.9482 -7.4929 21 6 -4.9457 -4.8348 -6.1200 22 6 -3.8681 -4.4428 -5.3532 23 16 -1.4935 -3.5536 -3.4022 24 6 2.1468 -3.6906 0.4959 25 6 1.8614 -3.3353 1.9646 26 6 0.5566 -2.6874 1.4722 27 1 -0.4850 0.8368 -0.0732 28 1 1.6872 -2.8118 -4.9425 29 1 -0.0113 -3.4923 -6.6930 30 1 -1.5827 -4.0504 -7.8322 31 1 -3.5149 -4.7606 -9.1784 32 1 -5.6641 -5.2555 -8.0886 33 1 -5.8919 -5.0538 -5.6475 34 1 -3.9696 -4.3551 -4.2816 35 1 1.7384 -4.6545 0.1925 36 1 3.1913 -3.5638 0.2111 37 1 2.5701 -2.6231 2.3873 38 1 1.7034 -4.2047 2.6028 39 1 0.3171 -1.7507 1.9757 40 1 -0.2876 -3.3760 1.4354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525397665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:41 Heat of formation + Delta-G solvation = -18.664830 kcal Electronic energy + Delta-G solvation = -24478.443994 eV Core-core repulsion = 20929.001359 eV Total energy + Delta-G solvation = -3549.442635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23173 -40.20585 -39.15895 -37.98297 -36.10448 -34.37154 -33.21639 -31.89325 -29.77540 -28.15769 -26.51573 -26.33426 -24.91886 -23.72197 -22.89751 -22.42541 -20.52089 -19.76119 -19.55515 -18.46473 -17.44498 -17.10245 -16.90815 -16.85777 -16.26786 -16.19023 -15.67702 -15.60103 -15.28877 -14.70564 -14.51070 -14.29285 -14.11766 -13.77938 -13.55457 -13.38344 -13.25305 -13.01334 -12.97897 -12.80165 -12.38721 -12.26330 -12.13565 -12.08636 -11.91296 -11.67055 -11.64966 -11.31808 -10.82675 -10.68441 -10.54762 -10.41978 -9.89430 -9.65802 -8.98514 -8.20054 -6.34496 -0.92666 0.37698 0.47163 0.48780 0.86596 1.32322 1.33934 1.44047 1.49384 2.14327 2.28380 2.36910 2.92789 3.11351 3.49860 3.92948 3.96892 4.00065 4.05703 4.14674 4.25040 4.26982 4.33039 4.36477 4.56670 4.57224 4.65161 4.81650 4.82728 4.90011 5.01353 5.10668 5.11947 5.15159 5.28815 5.35399 5.42978 5.53918 5.57250 5.59165 5.62861 5.75767 5.92238 6.04156 6.39118 6.66376 7.24557 7.38364 8.83969 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003178 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.329599 B = 8808.410121 C = 9162.058270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.047 0.953 9 C 0.209 3.791 10 O -0.348 6.348 11 C 0.525 3.475 12 O -0.525 6.525 13 C -0.274 4.274 14 C -0.054 4.054 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.042 4.042 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.127 4.127 23 S 0.209 5.791 24 C -0.159 4.159 25 C -0.108 4.108 26 C -0.104 4.104 27 H 0.263 0.737 28 H 0.153 0.847 29 H 0.184 0.816 30 H 0.144 0.856 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 -11.246 -14.462 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.771 3.229 4 H -0.212 1.212 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.065 0.935 9 C 0.175 3.825 10 O -0.264 6.264 11 C 0.369 3.631 12 O -0.417 6.417 13 C -0.392 4.392 14 C -0.087 4.087 15 C -0.170 4.170 16 C -0.249 4.249 17 C -0.044 4.044 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.146 4.146 23 S 0.480 5.520 24 C -0.196 4.196 25 C -0.145 4.145 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.171 0.829 29 H 0.201 0.799 30 H 0.162 0.838 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.083 -11.196 -13.107 20.493 hybrid contribution 1.905 1.545 -0.704 2.552 sum -9.178 -9.651 -13.811 19.186 Atomic orbital electron populations 1.70102 1.06711 1.27590 1.48490 1.25665 0.95672 1.01988 0.93806 0.85740 0.79317 0.79880 0.77935 1.21195 1.19751 1.18927 1.21041 0.92809 0.90394 1.51361 0.93473 1.21106 0.87994 0.92685 0.80741 1.86091 1.45299 1.79997 1.15015 1.19866 0.85137 0.74282 0.83790 1.90745 1.18551 1.44978 1.87446 1.23919 1.00044 1.18953 0.96289 1.20710 1.02036 0.96634 0.89335 1.20552 0.90550 1.03870 1.02023 1.24184 0.98102 1.06010 0.96605 1.18193 0.90763 1.01973 0.93461 1.21508 1.00699 0.98608 0.91445 1.21482 0.92368 0.98371 1.01384 1.21685 0.98639 0.98162 0.94624 1.21364 0.98750 0.99047 0.94660 1.21437 0.92897 1.00078 1.00218 1.84137 1.04853 1.61220 1.01759 1.23544 0.99671 0.98163 0.98250 1.22418 0.97045 1.00378 0.94706 1.22862 0.96810 0.99556 0.94996 0.92802 0.82894 0.79881 0.83818 0.82747 0.82973 0.83625 0.86438 0.90623 0.93236 0.90576 0.88893 0.92851 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.32 12.53 21.45 0.27 -52.05 16 2 C 0.03 1.78 5.24 84.65 0.44 2.22 16 3 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 4 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.52 -30.08 6.23 25.60 0.16 -29.92 16 8 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 9 C 0.21 10.98 0.47 -11.01 -0.01 10.97 16 10 O -0.35 -18.57 9.63 -58.47 -0.56 -19.14 16 11 C 0.52 26.96 7.53 69.92 0.53 27.49 16 12 O -0.53 -29.57 15.12 19.38 0.29 -29.28 16 13 C -0.27 -11.31 6.43 24.02 0.15 -11.15 16 14 C -0.05 -1.83 9.88 21.58 0.21 -1.61 16 15 C -0.14 -3.69 9.66 21.52 0.21 -3.48 16 16 C -0.13 -3.55 6.41 24.39 0.16 -3.40 16 17 C -0.04 -0.95 5.87 -20.09 -0.12 -1.07 16 18 C -0.10 -1.75 9.55 22.53 0.22 -1.54 16 19 C -0.12 -1.54 10.03 22.23 0.22 -1.31 16 20 C -0.11 -1.43 10.04 22.33 0.22 -1.20 16 21 C -0.12 -1.90 10.03 22.23 0.22 -1.68 16 22 C -0.13 -2.69 9.60 22.53 0.22 -2.48 16 23 S 0.21 7.09 22.03 -56.49 -1.24 5.85 16 24 C -0.16 -7.10 7.24 31.12 0.23 -6.87 16 25 C -0.11 -4.28 7.80 31.12 0.24 -4.03 16 26 C -0.10 -4.87 7.18 31.12 0.22 -4.64 16 27 H 0.26 14.71 8.32 -92.71 -0.77 13.94 16 28 H 0.15 4.99 8.03 -2.91 -0.02 4.96 16 29 H 0.18 3.24 6.91 -2.91 -0.02 3.22 16 30 H 0.14 1.88 6.76 -2.91 -0.02 1.86 16 31 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.12 2.55 7.27 -2.91 -0.02 2.53 16 35 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.05 2.30 8.09 -2.39 -0.02 2.28 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.05 2.70 7.63 -2.39 -0.02 2.69 16 40 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -72.67 356.93 5.37 -67.30 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.06 Total: 13.14 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.53 Total: -33.71 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.27 Total: -52.05 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.27 Total: -48.42 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.24 Total: 5.85 kcal Total: -72.67 5.37 -67.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525397665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.639 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds