Wall clock time and date at job start Tue Mar 31 2020 16:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 C 1.53006 * 109.46531 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47151 * 55.00628 * 4 3 2 6 6 C 1.50703 * 109.46675 * 175.00189 * 4 3 2 7 7 O 1.20825 * 119.99754 * 226.34878 * 6 4 3 8 8 O 1.34229 * 120.00011 * 46.34799 * 6 4 3 9 9 S 1.81397 * 109.47008 * 294.99969 * 4 3 2 10 10 O 1.42100 * 110.54683 * 291.04237 * 9 4 3 11 11 O 1.42097 * 110.54577 * 67.79749 * 9 4 3 12 12 N 1.65603 * 104.44822 * 179.41919 * 9 4 3 13 13 C 1.38830 * 119.99599 * 67.12215 * 12 9 4 14 14 C 1.39802 * 119.58136 * 206.03637 * 13 12 9 15 15 C 1.38597 * 119.49007 * 179.97438 * 14 13 12 16 16 C 1.38384 * 118.68134 * 0.02562 * 15 14 13 17 17 C 1.40561 * 119.14992 * 0.02562 * 16 15 14 18 18 C 1.41315 * 119.78720 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99350 * 11.44981 * 18 17 16 20 20 C 1.40018 * 120.00140 * 191.45573 * 18 17 16 21 21 N 1.30742 * 120.00315 * 9.15801 * 20 18 17 22 22 Si 1.86803 * 119.99879 * 189.15632 * 20 18 17 23 23 H 1.48503 * 109.47109 * 60.00135 * 22 20 18 24 24 H 1.48504 * 109.47063 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47219 * 300.00046 * 22 20 18 26 26 N 1.31952 * 119.58688 * 25.76369 * 13 12 9 27 27 H 1.09000 * 109.46958 * 59.99190 * 1 2 3 28 28 H 1.08989 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46696 * 300.00358 * 1 2 3 30 30 H 1.08994 * 109.46741 * 239.99760 * 2 1 3 31 31 H 1.09002 * 109.46786 * 120.00294 * 2 1 3 32 32 H 1.08997 * 109.47034 * 60.00805 * 3 2 1 33 33 H 1.08997 * 109.47198 * 300.00077 * 3 2 1 34 34 H 0.96703 * 116.99491 * 185.19060 * 8 6 4 35 35 H 0.96998 * 120.00387 * 247.12728 * 12 9 4 36 36 H 1.07998 * 120.25487 * 359.95705 * 14 13 12 37 37 H 1.07993 * 120.65728 * 180.02562 * 15 14 13 38 38 H 1.07995 * 120.42855 * 179.97438 * 16 15 14 39 39 H 0.97004 * 120.00415 * 184.84857 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0724 2.8578 -0.1244 7 8 4.9544 3.1195 -0.9077 8 8 3.5400 3.8278 0.6354 9 16 4.1753 0.7193 1.5490 10 8 3.8917 1.5787 2.6446 11 8 3.8674 -0.6667 1.6063 12 7 5.8249 0.7657 1.4101 13 6 6.4860 1.9864 1.3943 14 6 7.7255 2.0917 0.7563 15 6 8.3837 3.3113 0.7413 16 6 7.7887 4.3948 1.3635 17 6 6.5414 4.2252 1.9889 18 6 5.9214 5.3226 2.6279 19 1 6.3061 6.3210 2.4804 20 6 4.8086 5.1156 3.4521 21 7 4.4515 3.9001 3.7753 22 14 3.8344 6.5761 4.0902 23 1 3.2927 7.3489 2.9435 24 1 2.7126 6.0921 4.9344 25 1 4.7229 7.4484 4.8994 26 7 5.9341 3.0338 1.9769 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.8394 4.7317 0.4668 35 1 6.3291 -0.0599 1.3397 36 1 8.1670 1.2292 0.2792 37 1 9.3417 3.4141 0.2536 38 1 8.2768 5.3582 1.3691 39 1 3.6410 3.7527 4.2874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573724198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:52 Heat of formation + Delta-G solvation = -117.363306 kcal Electronic energy + Delta-G solvation = -28310.913926 eV Core-core repulsion = 24346.342141 eV Total energy + Delta-G solvation = -3964.571786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.66873 -38.38453 -36.64176 -35.78689 -35.37844 -35.20900 -34.58354 -33.10003 -30.89654 -30.44474 -28.81204 -25.53924 -25.16331 -21.85315 -21.49882 -21.40388 -21.23133 -18.84039 -17.97089 -17.83792 -16.90837 -16.49768 -16.25587 -15.85842 -15.05867 -14.78812 -14.54492 -14.52122 -14.20285 -13.88667 -13.77036 -13.06952 -12.88191 -12.82987 -12.65119 -12.30224 -12.16958 -11.79259 -11.47427 -11.42623 -11.31594 -11.15386 -11.07794 -11.00864 -10.82367 -10.69932 -10.66637 -10.52848 -10.39894 -10.22545 -10.00238 -9.76735 -9.11440 -8.13913 -7.62503 -7.24296 -6.34791 -4.43857 0.54828 2.71368 2.80276 2.98883 3.15676 3.16086 3.20399 3.23774 3.37668 4.03071 4.11283 4.34729 4.71430 4.76950 4.88020 4.99952 5.24324 5.36377 5.50244 5.55046 5.66107 5.78256 5.88751 5.94715 6.02370 6.10289 6.11868 6.23858 6.49058 6.75726 6.80072 7.01759 7.18963 7.29237 7.50809 7.58453 7.74520 8.09014 8.25564 8.49392 8.72469 8.93806 9.93564 10.41404 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.007127 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.400110 B = 3928.046452 C = 4984.826942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C -0.096 4.096 4 C -0.600 4.600 5 H 0.155 0.845 6 C 0.513 3.487 7 O -0.503 6.503 8 O -0.474 6.474 9 S 2.607 3.393 10 O -0.841 6.841 11 O -0.968 6.968 12 N -1.034 6.034 13 C 0.366 3.634 14 C -0.324 4.324 15 C -0.035 4.035 16 C -0.291 4.291 17 C 0.285 3.715 18 C -0.433 4.433 19 H 0.082 0.918 20 C 0.066 3.934 21 N -0.652 5.652 22 Si 0.891 3.109 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.270 1.270 26 N -0.500 5.500 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.419 0.581 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -4.593 -5.470 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.135 4.135 4 C -0.704 4.704 5 H 0.173 0.827 6 C 0.352 3.648 7 O -0.391 6.391 8 O -0.284 6.284 9 S 2.692 3.308 10 O -0.830 6.830 11 O -0.958 6.958 12 N -0.785 5.785 13 C 0.128 3.872 14 C -0.352 4.352 15 C -0.059 4.059 16 C -0.314 4.314 17 C 0.160 3.840 18 C -0.464 4.464 19 H 0.100 0.900 20 C -0.165 4.165 21 N -0.270 5.270 22 Si 0.716 3.284 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.195 1.195 26 N -0.221 5.221 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.273 0.727 35 H 0.254 0.746 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.590 -5.314 -4.274 10.204 hybrid contribution 1.151 1.021 -1.163 1.929 sum -6.439 -4.293 -5.437 9.458 Atomic orbital electron populations 1.21720 0.94761 1.02027 1.02139 1.22003 0.97381 0.95602 1.04376 1.21357 0.87688 0.98779 1.05645 1.30622 1.08157 1.02668 1.28918 0.82713 1.21134 0.79477 0.86395 0.77763 1.90732 1.28561 1.82987 1.36772 1.84441 1.65196 1.20291 1.58494 1.05879 0.73772 0.74679 0.76497 1.93880 1.81349 1.66035 1.41705 1.93559 1.83318 1.32417 1.86485 1.53134 1.26106 1.12158 1.87080 1.18107 0.90549 0.85887 0.92619 1.20629 1.00372 0.98487 1.15706 1.20633 0.96974 0.92728 0.95612 1.21652 0.99508 0.98262 1.12004 1.18084 0.87836 0.89028 0.89002 1.19459 1.10930 0.93477 1.22506 0.90016 1.25952 0.97915 0.96096 0.96496 1.69943 1.18227 1.19699 1.19113 0.86661 0.79632 0.82495 0.79625 1.19256 1.20409 1.19490 1.68239 1.35442 0.98658 1.19735 0.92608 0.92245 0.92227 0.90953 0.89788 0.88895 0.89704 0.72688 0.74614 0.88881 0.88554 0.88354 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.16 -1.90 5.62 -26.73 -0.15 -2.05 16 3 C -0.10 -1.30 4.43 -26.73 -0.12 -1.42 16 4 C -0.60 -9.78 2.89 -27.88 -0.08 -9.86 16 5 H 0.16 2.19 8.13 -51.93 -0.42 1.76 16 6 C 0.51 9.91 4.48 36.01 0.16 10.07 16 7 O -0.50 -11.03 17.19 -18.75 -0.32 -11.36 16 8 O -0.47 -9.06 12.41 -39.25 -0.49 -9.54 16 9 S 2.61 48.43 4.63 -107.50 -0.50 47.94 16 10 O -0.84 -18.66 14.28 -57.54 -0.82 -19.48 16 11 O -0.97 -17.77 15.79 -57.54 -0.91 -18.67 16 12 N -1.03 -20.04 5.68 31.15 0.18 -19.86 16 13 C 0.37 8.41 5.56 -155.32 -0.86 7.55 16 14 C -0.32 -7.19 10.00 -38.86 -0.39 -7.58 16 15 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 16 C -0.29 -6.93 9.83 -38.65 -0.38 -7.31 16 17 C 0.29 7.24 6.48 -85.00 -0.55 6.68 16 18 C -0.43 -10.62 9.12 -37.75 -0.34 -10.96 16 19 H 0.08 1.90 7.86 -52.48 -0.41 1.49 16 20 C 0.07 1.56 5.45 -17.35 -0.09 1.46 16 21 N -0.65 -16.25 9.70 55.55 0.54 -15.71 16 22 Si 0.89 17.64 29.57 -169.99 -5.03 12.62 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 26 N -0.50 -12.39 4.09 -10.32 -0.04 -12.43 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.53 8.14 -51.94 -0.42 0.10 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.15 5.58 -51.93 -0.29 0.86 16 32 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 7.30 9.11 45.56 0.41 7.71 16 35 H 0.42 6.76 8.86 -34.48 -0.31 6.46 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -31.50 339.37 -9.07 -40.57 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -3.95 Total: 16.54 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.84 Total: -15.72 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.67 Total: -48.01 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -2.54 Total: -59.05 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 48.43 SS G_CDS: -0.50 Total: 47.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.50 -9.07 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573724198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.794 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds