Wall clock time and date at job start Tue Mar 31 2020 16:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 C 1.53006 * 109.46531 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47151 * 55.00628 * 4 3 2 6 6 C 1.50703 * 109.46675 * 175.00189 * 4 3 2 7 7 O 1.20825 * 119.99754 * 226.34878 * 6 4 3 8 8 O 1.34229 * 120.00011 * 46.34799 * 6 4 3 9 9 S 1.81397 * 109.47008 * 294.99969 * 4 3 2 10 10 O 1.42100 * 110.54683 * 291.04237 * 9 4 3 11 11 O 1.42097 * 110.54577 * 67.79749 * 9 4 3 12 12 N 1.65603 * 104.44822 * 179.41919 * 9 4 3 13 13 C 1.38830 * 119.99599 * 67.12215 * 12 9 4 14 14 C 1.39802 * 119.58136 * 206.03637 * 13 12 9 15 15 C 1.38597 * 119.49007 * 179.97438 * 14 13 12 16 16 C 1.38384 * 118.68134 * 0.02562 * 15 14 13 17 17 C 1.40561 * 119.14992 * 0.02562 * 16 15 14 18 18 C 1.41315 * 119.78720 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99350 * 11.44981 * 18 17 16 20 20 C 1.40018 * 120.00140 * 191.45573 * 18 17 16 21 21 N 1.30742 * 120.00315 * 9.15801 * 20 18 17 22 22 Si 1.86803 * 119.99879 * 189.15632 * 20 18 17 23 23 H 1.48503 * 109.47109 * 60.00135 * 22 20 18 24 24 H 1.48504 * 109.47063 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47219 * 300.00046 * 22 20 18 26 26 N 1.31952 * 119.58688 * 25.76369 * 13 12 9 27 27 H 1.09000 * 109.46958 * 59.99190 * 1 2 3 28 28 H 1.08989 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46696 * 300.00358 * 1 2 3 30 30 H 1.08994 * 109.46741 * 239.99760 * 2 1 3 31 31 H 1.09002 * 109.46786 * 120.00294 * 2 1 3 32 32 H 1.08997 * 109.47034 * 60.00805 * 3 2 1 33 33 H 1.08997 * 109.47198 * 300.00077 * 3 2 1 34 34 H 0.96703 * 116.99491 * 185.19060 * 8 6 4 35 35 H 0.96998 * 120.00387 * 247.12728 * 12 9 4 36 36 H 1.07998 * 120.25487 * 359.95705 * 14 13 12 37 37 H 1.07993 * 120.65728 * 180.02562 * 15 14 13 38 38 H 1.07995 * 120.42855 * 179.97438 * 16 15 14 39 39 H 0.97004 * 120.00415 * 184.84857 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0724 2.8578 -0.1244 7 8 4.9544 3.1195 -0.9077 8 8 3.5400 3.8278 0.6354 9 16 4.1753 0.7193 1.5490 10 8 3.8917 1.5787 2.6446 11 8 3.8674 -0.6667 1.6063 12 7 5.8249 0.7657 1.4101 13 6 6.4860 1.9864 1.3943 14 6 7.7255 2.0917 0.7563 15 6 8.3837 3.3113 0.7413 16 6 7.7887 4.3948 1.3635 17 6 6.5414 4.2252 1.9889 18 6 5.9214 5.3226 2.6279 19 1 6.3061 6.3210 2.4804 20 6 4.8086 5.1156 3.4521 21 7 4.4515 3.9001 3.7753 22 14 3.8344 6.5761 4.0902 23 1 3.2927 7.3489 2.9435 24 1 2.7126 6.0921 4.9344 25 1 4.7229 7.4484 4.8994 26 7 5.9341 3.0338 1.9769 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.8394 4.7317 0.4668 35 1 6.3291 -0.0599 1.3397 36 1 8.1670 1.2292 0.2792 37 1 9.3417 3.4141 0.2536 38 1 8.2768 5.3582 1.3691 39 1 3.6410 3.7527 4.2874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573724198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:51 Heat of formation + Delta-G solvation = -138.509912 kcal Electronic energy + Delta-G solvation = -28311.830912 eV Core-core repulsion = 24346.342141 eV Total energy + Delta-G solvation = -3965.488771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21708 -40.11330 -38.12350 -37.06937 -36.89614 -36.69369 -36.25093 -34.84519 -32.22288 -32.00639 -30.57113 -27.29358 -26.30692 -23.56130 -23.13781 -22.87959 -22.36267 -20.36028 -19.62612 -19.40314 -18.45406 -18.09811 -17.81617 -17.29103 -16.57021 -16.29708 -16.23775 -16.01937 -15.68730 -15.42309 -14.89319 -14.71166 -14.39022 -14.25060 -13.91670 -13.81308 -13.42368 -13.19924 -12.99820 -12.92112 -12.70481 -12.61467 -12.55862 -12.45591 -12.32561 -12.24284 -12.12356 -12.03949 -11.83048 -11.70918 -11.55658 -11.20392 -10.85949 -9.92335 -9.40258 -9.01335 -8.11452 -6.28495 -0.93541 1.03131 1.17128 1.29041 1.53266 1.61209 1.62207 1.71656 1.91232 2.36779 2.67879 2.99634 3.10887 3.46977 3.73234 3.84901 3.92381 4.06350 4.10761 4.44157 4.44873 4.48353 4.65222 4.78043 4.81717 4.89926 4.98649 5.08504 5.16666 5.20116 5.30536 5.38869 5.54493 5.69003 5.77735 5.91199 5.98496 6.34831 6.42982 6.92751 6.98025 7.11231 8.13720 8.64404 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.007127 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.400110 B = 3928.046452 C = 4984.826942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 C -0.096 4.096 4 C -0.587 4.587 5 H 0.181 0.819 6 C 0.513 3.487 7 O -0.532 6.532 8 O -0.477 6.477 9 S 2.616 3.384 10 O -0.880 6.880 11 O -0.967 6.967 12 N -1.033 6.033 13 C 0.354 3.646 14 C -0.331 4.331 15 C -0.038 4.038 16 C -0.316 4.316 17 C 0.259 3.741 18 C -0.456 4.456 19 H 0.084 0.916 20 C 0.037 3.963 21 N -0.681 5.681 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.280 1.280 25 H -0.271 1.271 26 N -0.512 5.512 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.416 0.584 35 H 0.432 0.568 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -5.023 -6.557 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C -0.135 4.135 4 C -0.694 4.694 5 H 0.198 0.802 6 C 0.354 3.646 7 O -0.422 6.422 8 O -0.287 6.287 9 S 2.704 3.296 10 O -0.869 6.869 11 O -0.957 6.957 12 N -0.785 5.785 13 C 0.115 3.885 14 C -0.358 4.358 15 C -0.062 4.062 16 C -0.340 4.340 17 C 0.134 3.866 18 C -0.486 4.486 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.299 5.299 22 Si 0.780 3.220 23 H -0.181 1.181 24 H -0.205 1.205 25 H -0.196 1.196 26 N -0.232 5.232 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.276 0.724 35 H 0.269 0.731 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.401 -5.774 -5.339 11.508 hybrid contribution 1.450 1.075 -0.895 2.015 sum -6.951 -4.699 -6.234 10.453 Atomic orbital electron populations 1.21747 0.93023 1.03096 1.02834 1.22042 0.99000 0.94286 1.04252 1.21494 0.85403 1.00205 1.06382 1.30582 1.10221 1.00699 1.27880 0.80191 1.21587 0.78847 0.87249 0.76958 1.90714 1.29809 1.83633 1.38062 1.84449 1.65110 1.20689 1.58432 1.05401 0.73243 0.74231 0.76695 1.93850 1.81758 1.66884 1.44453 1.93561 1.83118 1.32190 1.86842 1.53084 1.26626 1.11727 1.87040 1.18420 0.91186 0.86499 0.92396 1.21025 1.00134 0.99481 1.15202 1.21017 0.98052 0.92231 0.94926 1.21847 0.99673 0.99321 1.13116 1.18482 0.88685 0.89747 0.89700 1.19681 1.11995 0.93548 1.23376 0.89777 1.26545 0.98314 0.98318 0.96017 1.70064 1.18457 1.21561 1.19829 0.85633 0.78000 0.79253 0.79079 1.18131 1.20471 1.19588 1.68261 1.35883 0.98905 1.20145 0.91101 0.91047 0.92428 0.89330 0.91636 0.89630 0.87527 0.72399 0.73123 0.86258 0.85480 0.87722 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.99 0.71 -1.90 16 2 C -0.16 -3.49 5.62 30.60 0.17 -3.32 16 3 C -0.10 -2.42 4.43 30.60 0.14 -2.28 16 4 C -0.59 -18.29 2.89 29.85 0.09 -18.20 16 5 H 0.18 4.64 8.13 -2.39 -0.02 4.62 16 6 C 0.51 19.48 4.48 71.24 0.32 19.80 16 7 O -0.53 -23.10 17.19 21.97 0.38 -22.73 16 8 O -0.48 -18.26 12.41 -51.41 -0.64 -18.90 16 9 S 2.62 95.63 4.63 -56.49 -0.26 95.37 16 10 O -0.88 -39.50 14.28 -127.65 -1.82 -41.32 16 11 O -0.97 -34.46 15.79 -127.65 -2.02 -36.48 16 12 N -1.03 -39.28 5.68 -55.36 -0.31 -39.60 16 13 C 0.35 16.09 5.56 133.42 0.74 16.83 16 14 C -0.33 -14.28 10.00 22.73 0.23 -14.05 16 15 C -0.04 -1.64 10.15 22.39 0.23 -1.42 16 16 C -0.32 -15.13 9.83 22.87 0.22 -14.91 16 17 C 0.26 13.31 6.48 40.18 0.26 13.57 16 18 C -0.46 -22.66 9.12 23.46 0.21 -22.44 16 19 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16 20 C 0.04 1.72 5.45 85.29 0.46 2.19 16 21 N -0.68 -34.47 9.70 21.83 0.21 -34.26 16 22 Si 0.96 36.33 29.57 68.60 2.03 38.36 16 23 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 24 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 26 N -0.51 -25.53 4.09 -186.57 -0.76 -26.29 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.70 5.58 -2.39 -0.01 1.69 16 32 H 0.09 2.30 8.06 -2.39 -0.02 2.28 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.42 14.99 9.11 -74.06 -0.67 14.31 16 35 H 0.43 13.44 8.86 -96.74 -0.86 12.58 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -67.17 339.37 0.17 -67.01 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -0.42 Total: 44.97 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.79 Total: -26.13 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -0.87 Total: -100.15 kcal Atomic # 8 Polarization: -115.32 SS G_CDS: -4.10 Total: -119.42 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 16 Polarization: 95.63 SS G_CDS: -0.26 Total: 95.37 kcal Total: -67.17 0.17 -67.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573724198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.504 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds