Wall clock time and date at job start Tue Mar 31 2020 16:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.52992 * 109.47179 * 175.37997 * 3 2 1 5 5 H 1.09002 * 109.47055 * 306.58238 * 4 3 2 6 6 C 1.50701 * 109.47455 * 186.58192 * 4 3 2 7 7 O 1.20827 * 119.99876 * 129.99315 * 6 4 3 8 8 O 1.34230 * 119.99894 * 310.00418 * 6 4 3 9 9 S 1.81406 * 109.47237 * 66.58091 * 4 3 2 10 10 O 1.42096 * 110.54459 * 287.64524 * 9 4 3 11 11 O 1.42098 * 110.53834 * 64.40054 * 9 4 3 12 12 N 1.65607 * 104.44611 * 176.02209 * 9 4 3 13 13 C 1.38817 * 119.99951 * 62.66351 * 12 9 4 14 14 C 1.39798 * 119.58785 * 1.40212 * 13 12 9 15 15 C 1.38590 * 119.49360 * 179.79325 * 14 13 12 16 16 C 1.38388 * 118.68156 * 0.47794 * 15 14 13 17 17 C 1.40560 * 119.14777 * 359.74932 * 16 15 14 18 18 C 1.41320 * 119.78364 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00167 * 348.85022 * 18 17 16 20 20 C 1.40030 * 119.99644 * 168.85672 * 18 17 16 21 21 N 1.30742 * 119.99747 * 163.67130 * 20 18 17 22 22 Si 1.86797 * 120.00033 * 343.67559 * 20 18 17 23 23 H 1.48499 * 109.47290 * 84.50580 * 22 20 18 24 24 H 1.48503 * 109.47132 * 204.50500 * 22 20 18 25 25 H 1.48499 * 109.47395 * 324.50215 * 22 20 18 26 26 N 1.31955 * 119.58392 * 181.68112 * 13 12 9 27 27 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47278 * 300.00150 * 1 2 3 29 29 H 1.08997 * 109.47190 * 60.00283 * 1 2 3 30 30 H 1.08997 * 109.47190 * 119.99717 * 2 1 3 31 31 H 1.08996 * 109.47278 * 239.99850 * 2 1 3 32 32 H 1.09000 * 109.46585 * 295.37854 * 3 2 1 33 33 H 1.08996 * 109.47548 * 55.37456 * 3 2 1 34 34 H 0.96692 * 116.99785 * 179.97438 * 8 6 4 35 35 H 0.96997 * 119.99913 * 242.65697 * 12 9 4 36 36 H 1.08001 * 120.25139 * 0.02562 * 14 13 12 37 37 H 1.08002 * 120.66326 * 180.22356 * 15 14 13 38 38 H 1.08005 * 120.43134 * 179.77301 * 16 15 14 39 39 H 0.96995 * 120.00455 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 0.1162 5 1 3.8645 0.8544 0.9828 6 6 4.0555 2.8600 0.2788 7 8 4.8253 3.1344 1.1687 8 8 3.6366 3.8162 -0.5650 9 16 4.2870 0.7231 -1.3840 10 8 4.0761 -0.6818 -1.4132 11 8 3.9954 1.5315 -2.5156 12 7 5.9218 0.8864 -1.1758 13 6 6.5554 0.2400 -0.1233 14 6 5.8100 -0.5702 0.7383 15 6 6.4454 -1.2180 1.7859 16 6 7.8066 -1.0331 1.9534 17 6 8.5001 -0.2020 1.0566 18 6 9.8904 -0.0042 1.2147 19 1 10.3843 -0.3379 2.1153 20 6 10.6275 0.6246 0.2038 21 7 11.8202 1.0948 0.4604 22 14 9.9068 0.7917 -1.5114 23 1 9.0449 1.9995 -1.5707 24 1 11.0072 0.9198 -2.5004 25 1 9.0955 -0.4114 -1.8269 26 7 7.8528 0.4025 0.0547 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.7458 1.9318 -0.9285 33 1 1.6106 1.9797 0.8456 34 1 3.9780 4.7092 -0.4207 35 1 6.4366 1.4336 -1.7893 36 1 4.7479 -0.6933 0.5865 37 1 5.8885 -1.8512 2.4607 38 1 8.3295 -1.5213 2.7625 39 1 12.3310 1.5300 -0.2398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573724199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:56 Heat of formation + Delta-G solvation = -141.071655 kcal Electronic energy + Delta-G solvation = -27120.676012 eV Core-core repulsion = 23155.076156 eV Total energy + Delta-G solvation = -3965.599857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51333 -39.06631 -37.33701 -36.43926 -36.31950 -35.97898 -35.08959 -33.47882 -31.54327 -31.12137 -29.36203 -25.95363 -25.62382 -22.49051 -22.24293 -21.76921 -21.52025 -19.54922 -18.66096 -17.97028 -17.62286 -17.33891 -16.94353 -16.65374 -15.60554 -15.38231 -15.23024 -14.93980 -14.60473 -14.25208 -14.17022 -13.64008 -13.52765 -13.12219 -12.78705 -12.66405 -12.61272 -12.42981 -12.34792 -12.21417 -11.97309 -11.80034 -11.68637 -11.52205 -11.35873 -11.11442 -10.97862 -10.88418 -10.69654 -10.51408 -10.37480 -10.19179 -9.35174 -8.69852 -8.00492 -7.62750 -7.08599 -4.85021 -0.16395 1.87785 2.32204 2.37382 2.55711 2.69026 3.32926 3.37275 3.42695 3.49329 3.87319 4.15719 4.24525 4.40132 4.43046 4.58858 4.79819 5.05567 5.10608 5.18531 5.31943 5.41790 5.45350 5.48875 5.71511 5.80215 5.82132 5.98303 6.01422 6.14359 6.22205 6.41156 6.62758 6.93917 7.05607 7.23732 7.38164 7.59702 7.73887 7.98460 8.37256 8.44505 9.35467 9.84105 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.004759 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.483385 B = 5881.664447 C = 6209.557747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C -0.100 4.100 4 C -0.602 4.602 5 H 0.187 0.813 6 C 0.496 3.504 7 O -0.473 6.473 8 O -0.504 6.504 9 S 2.631 3.369 10 O -0.916 6.916 11 O -0.932 6.932 12 N -1.039 6.039 13 C 0.417 3.583 14 C -0.372 4.372 15 C -0.012 4.012 16 C -0.275 4.275 17 C 0.270 3.730 18 C -0.400 4.400 19 H 0.102 0.898 20 C 0.086 3.914 21 N -0.786 5.786 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.324 1.324 25 H -0.266 1.266 26 N -0.590 5.590 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.418 0.582 35 H 0.425 0.575 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.661 2.405 -1.743 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C -0.138 4.138 4 C -0.708 4.708 5 H 0.204 0.796 6 C 0.334 3.666 7 O -0.358 6.358 8 O -0.317 6.317 9 S 2.717 3.283 10 O -0.906 6.906 11 O -0.922 6.922 12 N -0.790 5.790 13 C 0.180 3.820 14 C -0.398 4.398 15 C -0.035 4.035 16 C -0.298 4.298 17 C 0.148 3.852 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.139 4.139 21 N -0.407 5.407 22 Si 0.822 3.178 23 H -0.198 1.198 24 H -0.256 1.256 25 H -0.192 1.192 26 N -0.315 5.315 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.278 0.722 35 H 0.262 0.738 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.395 2.249 -2.676 17.742 hybrid contribution 0.038 0.797 0.485 0.934 sum -17.357 3.047 -2.191 17.758 Atomic orbital electron populations 1.21719 0.94295 1.02466 1.02170 1.21961 0.97777 0.94875 1.04621 1.21473 0.86804 0.99765 1.05797 1.30896 1.09869 1.01447 1.28577 0.79595 1.21647 0.78524 0.86462 0.79957 1.90837 1.31282 1.81958 1.31694 1.84522 1.68949 1.22547 1.55639 1.04972 0.72677 0.75597 0.75059 1.93673 1.83948 1.27558 1.85413 1.93636 1.82865 1.71190 1.44528 1.53440 1.26787 1.60814 1.37922 1.17632 0.90470 0.88984 0.84903 1.20678 0.99131 1.14470 1.05526 1.20632 0.94169 0.94534 0.94204 1.21548 0.94418 1.08404 1.05436 1.18248 0.93382 0.87346 0.86262 1.19592 0.90026 1.29267 1.04124 0.88041 1.26425 0.93739 0.89921 1.03790 1.69641 1.10891 1.23526 1.36666 0.84751 0.75315 0.81284 0.76472 1.19804 1.25584 1.19175 1.66309 1.06828 1.31617 1.26789 0.91872 0.92341 0.92298 0.89999 0.90363 0.88994 0.88672 0.72168 0.73833 0.87511 0.87012 0.86966 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.15 -1.50 5.54 -26.73 -0.15 -1.64 16 3 C -0.10 -1.00 4.45 -26.73 -0.12 -1.12 16 4 C -0.60 -8.05 2.29 -27.89 -0.06 -8.11 16 5 H 0.19 2.45 5.85 -51.92 -0.30 2.15 16 6 C 0.50 7.07 6.88 36.01 0.25 7.32 16 7 O -0.47 -8.40 17.85 -18.75 -0.33 -8.74 16 8 O -0.50 -5.57 13.07 -39.26 -0.51 -6.08 16 9 S 2.63 42.56 3.96 -107.50 -0.43 42.13 16 10 O -0.92 -16.11 14.07 -57.54 -0.81 -16.92 16 11 O -0.93 -15.66 17.98 -57.54 -1.03 -16.70 16 12 N -1.04 -20.05 5.54 31.15 0.17 -19.87 16 13 C 0.42 9.36 7.48 -155.33 -1.16 8.20 16 14 C -0.37 -7.62 7.77 -38.87 -0.30 -7.92 16 15 C -0.01 -0.24 10.15 -39.40 -0.40 -0.64 16 16 C -0.28 -6.22 9.83 -38.65 -0.38 -6.60 16 17 C 0.27 6.91 6.22 -85.00 -0.53 6.38 16 18 C -0.40 -10.63 9.65 -37.74 -0.36 -10.99 16 19 H 0.10 2.70 8.06 -52.49 -0.42 2.27 16 20 C 0.09 2.26 5.51 -17.34 -0.10 2.16 16 21 N -0.79 -20.48 13.92 55.55 0.77 -19.70 16 22 Si 0.99 23.78 25.34 -169.99 -4.31 19.48 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.32 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.27 -6.66 6.92 56.52 0.39 -6.27 16 26 N -0.59 -14.92 5.41 -10.33 -0.06 -14.98 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.85 6.15 -51.93 -0.32 0.53 16 32 H 0.09 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.42 2.73 9.10 45.56 0.41 3.14 16 35 H 0.43 7.78 8.91 -34.47 -0.31 7.48 16 36 H 0.11 1.86 4.26 -52.49 -0.22 1.64 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 39 H 0.29 6.91 8.29 -40.82 -0.34 6.57 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -33.22 339.52 -8.05 -41.27 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -3.69 Total: 8.70 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.95 Total: -13.70 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.89 Total: -54.55 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -2.69 Total: -48.44 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.31 Total: 19.48 kcal Atomic # 16 Polarization: 42.56 SS G_CDS: -0.43 Total: 42.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.22 -8.05 -41.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573724199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.798 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds