Wall clock time and date at job start Tue Mar 31 2020 16:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.52992 * 109.47179 * 175.37997 * 3 2 1 5 5 H 1.09002 * 109.47055 * 306.58238 * 4 3 2 6 6 C 1.50701 * 109.47455 * 186.58192 * 4 3 2 7 7 O 1.20827 * 119.99876 * 129.99315 * 6 4 3 8 8 O 1.34230 * 119.99894 * 310.00418 * 6 4 3 9 9 S 1.81406 * 109.47237 * 66.58091 * 4 3 2 10 10 O 1.42096 * 110.54459 * 287.64524 * 9 4 3 11 11 O 1.42098 * 110.53834 * 64.40054 * 9 4 3 12 12 N 1.65607 * 104.44611 * 176.02209 * 9 4 3 13 13 C 1.38817 * 119.99951 * 62.66351 * 12 9 4 14 14 C 1.39798 * 119.58785 * 1.40212 * 13 12 9 15 15 C 1.38590 * 119.49360 * 179.79325 * 14 13 12 16 16 C 1.38388 * 118.68156 * 0.47794 * 15 14 13 17 17 C 1.40560 * 119.14777 * 359.74932 * 16 15 14 18 18 C 1.41320 * 119.78364 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00167 * 348.85022 * 18 17 16 20 20 C 1.40030 * 119.99644 * 168.85672 * 18 17 16 21 21 N 1.30742 * 119.99747 * 163.67130 * 20 18 17 22 22 Si 1.86797 * 120.00033 * 343.67559 * 20 18 17 23 23 H 1.48499 * 109.47290 * 84.50580 * 22 20 18 24 24 H 1.48503 * 109.47132 * 204.50500 * 22 20 18 25 25 H 1.48499 * 109.47395 * 324.50215 * 22 20 18 26 26 N 1.31955 * 119.58392 * 181.68112 * 13 12 9 27 27 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47278 * 300.00150 * 1 2 3 29 29 H 1.08997 * 109.47190 * 60.00283 * 1 2 3 30 30 H 1.08997 * 109.47190 * 119.99717 * 2 1 3 31 31 H 1.08996 * 109.47278 * 239.99850 * 2 1 3 32 32 H 1.09000 * 109.46585 * 295.37854 * 3 2 1 33 33 H 1.08996 * 109.47548 * 55.37456 * 3 2 1 34 34 H 0.96692 * 116.99785 * 179.97438 * 8 6 4 35 35 H 0.96997 * 119.99913 * 242.65697 * 12 9 4 36 36 H 1.08001 * 120.25139 * 0.02562 * 14 13 12 37 37 H 1.08002 * 120.66326 * 180.22356 * 15 14 13 38 38 H 1.08005 * 120.43134 * 179.77301 * 16 15 14 39 39 H 0.96995 * 120.00455 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 0.1162 5 1 3.8645 0.8544 0.9828 6 6 4.0555 2.8600 0.2788 7 8 4.8253 3.1344 1.1687 8 8 3.6366 3.8162 -0.5650 9 16 4.2870 0.7231 -1.3840 10 8 4.0761 -0.6818 -1.4132 11 8 3.9954 1.5315 -2.5156 12 7 5.9218 0.8864 -1.1758 13 6 6.5554 0.2400 -0.1233 14 6 5.8100 -0.5702 0.7383 15 6 6.4454 -1.2180 1.7859 16 6 7.8066 -1.0331 1.9534 17 6 8.5001 -0.2020 1.0566 18 6 9.8904 -0.0042 1.2147 19 1 10.3843 -0.3379 2.1153 20 6 10.6275 0.6246 0.2038 21 7 11.8202 1.0948 0.4604 22 14 9.9068 0.7917 -1.5114 23 1 9.0449 1.9995 -1.5707 24 1 11.0072 0.9198 -2.5004 25 1 9.0955 -0.4114 -1.8269 26 7 7.8528 0.4025 0.0547 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.7458 1.9318 -0.9285 33 1 1.6106 1.9797 0.8456 34 1 3.9780 4.7092 -0.4207 35 1 6.4366 1.4336 -1.7893 36 1 4.7479 -0.6933 0.5865 37 1 5.8885 -1.8512 2.4607 38 1 8.3295 -1.5213 2.7625 39 1 12.3310 1.5300 -0.2398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573724199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:55 Heat of formation + Delta-G solvation = -165.601629 kcal Electronic energy + Delta-G solvation = -27121.739712 eV Core-core repulsion = 23155.076156 eV Total energy + Delta-G solvation = -3966.663556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62423 -40.80831 -38.68494 -37.62314 -37.38710 -37.00051 -36.72583 -35.30856 -33.13131 -32.17422 -31.13561 -27.71391 -26.49665 -24.06107 -23.74358 -23.04823 -22.43068 -20.91371 -20.06505 -19.46524 -19.12237 -18.69792 -18.25810 -17.90523 -17.08456 -16.78762 -16.51152 -16.30902 -16.04454 -15.78433 -15.28663 -14.99524 -14.69518 -14.57752 -14.35754 -13.97849 -13.90617 -13.68939 -13.66538 -13.43029 -13.39368 -13.05417 -12.87847 -12.83868 -12.79202 -12.41004 -12.33062 -12.17796 -12.04223 -12.00743 -11.73954 -11.46929 -11.28421 -10.46786 -9.84571 -9.38424 -9.01925 -6.78425 -1.44840 0.54361 0.70455 0.81576 1.14377 1.37692 1.47276 1.53992 1.57052 2.15036 2.33275 2.49126 2.75655 3.09379 3.41440 3.54200 3.59781 3.83699 3.99209 4.02247 4.26149 4.38580 4.41820 4.49964 4.63519 4.70331 4.72924 4.87505 4.95419 5.16964 5.19149 5.20847 5.28534 5.35772 5.41457 5.52346 5.66040 5.93058 6.05850 6.47408 6.57324 6.65508 7.51895 7.96586 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.004759 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.483385 B = 5881.664447 C = 6209.557747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.162 4.162 3 C -0.100 4.100 4 C -0.588 4.588 5 H 0.191 0.809 6 C 0.502 3.498 7 O -0.513 6.513 8 O -0.493 6.493 9 S 2.632 3.368 10 O -0.932 6.932 11 O -0.940 6.940 12 N -1.048 6.048 13 C 0.399 3.601 14 C -0.359 4.359 15 C -0.003 4.003 16 C -0.290 4.290 17 C 0.257 3.743 18 C -0.440 4.440 19 H 0.085 0.915 20 C 0.062 3.938 21 N -0.817 5.817 22 Si 1.027 2.973 23 H -0.274 1.274 24 H -0.311 1.311 25 H -0.284 1.284 26 N -0.616 5.616 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.439 0.561 35 H 0.426 0.574 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.126 0.874 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 2.352 -1.564 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.200 4.200 3 C -0.139 4.139 4 C -0.697 4.697 5 H 0.209 0.791 6 C 0.341 3.659 7 O -0.401 6.401 8 O -0.308 6.308 9 S 2.722 3.278 10 O -0.922 6.922 11 O -0.930 6.930 12 N -0.795 5.795 13 C 0.163 3.837 14 C -0.385 4.385 15 C -0.027 4.027 16 C -0.313 4.313 17 C 0.133 3.867 18 C -0.472 4.472 19 H 0.104 0.896 20 C -0.160 4.160 21 N -0.441 5.441 22 Si 0.860 3.140 23 H -0.201 1.201 24 H -0.242 1.242 25 H -0.211 1.211 26 N -0.342 5.342 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.302 0.698 35 H 0.262 0.738 36 H 0.158 0.842 37 H 0.179 0.821 38 H 0.144 0.856 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.850 2.211 -2.562 21.122 hybrid contribution 0.768 0.807 0.444 1.199 sum -20.081 3.018 -2.118 20.417 Atomic orbital electron populations 1.21742 0.92610 1.03154 1.03175 1.22050 0.99375 0.94349 1.04223 1.21690 0.83995 1.00708 1.07524 1.30787 1.12079 1.00880 1.26004 0.79138 1.21734 0.77593 0.87076 0.79474 1.90839 1.33017 1.82688 1.33545 1.84486 1.68369 1.23596 1.54380 1.04918 0.71707 0.75293 0.75865 1.93652 1.83750 1.28678 1.86127 1.93626 1.82456 1.71150 1.45780 1.53667 1.28007 1.60595 1.37274 1.18026 0.90016 0.89607 0.86006 1.21244 1.00766 1.12215 1.04238 1.21198 0.93396 0.93866 0.94219 1.21791 0.95767 1.08242 1.05471 1.18474 0.93349 0.87747 0.87117 1.19589 0.91086 1.32055 1.04428 0.89645 1.26818 0.94007 0.89866 1.05271 1.69638 1.11645 1.25248 1.37553 0.84193 0.74799 0.80075 0.74928 1.20074 1.24213 1.21122 1.66221 1.08423 1.32313 1.27217 0.91435 0.90978 0.91727 0.89389 0.91856 0.87978 0.86051 0.69763 0.73839 0.84225 0.82143 0.85605 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -0.99 16 2 C -0.16 -2.58 5.54 30.60 0.17 -2.41 16 3 C -0.10 -1.63 4.45 30.59 0.14 -1.49 16 4 C -0.59 -13.96 2.29 29.85 0.07 -13.89 16 5 H 0.19 4.36 5.85 -2.39 -0.01 4.34 16 6 C 0.50 13.06 6.88 71.24 0.49 13.55 16 7 O -0.51 -17.39 17.85 21.96 0.39 -17.00 16 8 O -0.49 -9.50 13.07 -51.42 -0.67 -10.17 16 9 S 2.63 79.73 3.96 -56.49 -0.22 79.51 16 10 O -0.93 -30.75 14.07 -127.65 -1.80 -32.54 16 11 O -0.94 -29.84 17.98 -127.65 -2.30 -32.13 16 12 N -1.05 -39.29 5.54 -55.37 -0.31 -39.60 16 13 C 0.40 17.48 7.48 133.42 1.00 18.47 16 14 C -0.36 -13.71 7.77 22.73 0.18 -13.53 16 15 C 0.00 -0.12 10.15 22.39 0.23 0.11 16 16 C -0.29 -12.80 9.83 22.87 0.22 -12.58 16 17 C 0.26 13.30 6.22 40.18 0.25 13.55 16 18 C -0.44 -24.31 9.65 23.46 0.23 -24.09 16 19 H 0.09 4.80 8.06 -2.92 -0.02 4.78 16 20 C 0.06 3.34 5.51 85.29 0.47 3.81 16 21 N -0.82 -44.05 13.92 21.84 0.30 -43.75 16 22 Si 1.03 49.94 25.34 68.60 1.74 51.68 16 23 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.31 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.28 -14.47 6.92 99.48 0.69 -13.78 16 26 N -0.62 -31.20 5.41 -186.58 -1.01 -32.21 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.20 6.15 -2.39 -0.01 1.18 16 32 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.44 4.53 9.10 -74.06 -0.67 3.85 16 35 H 0.43 15.47 8.91 -96.75 -0.86 14.61 16 36 H 0.14 4.34 4.26 -2.91 -0.01 4.33 16 37 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.13 5.09 8.06 -2.91 -0.02 5.06 16 39 H 0.30 14.59 8.29 -92.71 -0.77 13.82 16 Total: -1.00 -72.80 339.52 -0.15 -72.96 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.43 Total: 22.75 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.15 Total: -19.49 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -1.01 Total: -115.56 kcal Atomic # 8 Polarization: -87.48 SS G_CDS: -4.37 Total: -91.85 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 1.74 Total: 51.68 kcal Atomic # 16 Polarization: 79.73 SS G_CDS: -0.22 Total: 79.51 kcal Total: -72.80 -0.15 -72.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573724199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.646 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds