Wall clock time and date at job start Tue Mar 31 2020 15:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48505 * 109.47055 * 270.00013 * 3 2 1 5 5 H 1.48495 * 109.47164 * 29.99855 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99948 * 3 2 1 7 7 C 1.40026 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 170.15337 * 7 2 1 9 9 C 1.41551 * 120.00294 * 350.15625 * 7 2 1 10 10 C 1.41181 * 120.99279 * 153.72475 * 9 7 2 11 11 C 1.37587 * 119.01560 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11354 * 0.02920 * 11 10 9 13 13 C 1.32485 * 122.22732 * 359.65030 * 12 11 10 14 14 N 1.39394 * 119.58230 * 180.33956 * 13 12 11 15 15 C 1.34768 * 119.99970 * 5.66096 * 14 13 12 16 16 O 1.21596 * 120.00143 * 5.08742 * 15 14 13 17 17 C 1.47469 * 120.00215 * 185.08423 * 15 14 13 18 18 C 1.37889 * 126.75263 * 0.02562 * 17 15 14 19 19 O 1.33604 * 108.39894 * 180.02562 * 18 17 15 20 20 C 1.34895 * 109.89044 * 359.97438 * 19 18 17 21 21 C 1.41673 * 125.68348 * 180.02562 * 20 19 18 22 22 C 1.35662 * 120.00212 * 359.97374 * 21 20 19 23 23 C 1.41364 * 119.99898 * 180.02562 * 22 21 20 24 24 O 1.21700 * 120.00056 * 359.97438 * 23 22 21 25 25 O 1.34985 * 119.99973 * 180.02562 * 23 22 21 26 26 C 1.36514 * 108.62792 * 359.72759 * 20 19 18 27 27 C 1.38626 * 120.83556 * 0.64160 * 13 12 11 28 28 H 0.97002 * 119.99296 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.49512 * 0.04897 * 10 9 7 30 30 H 1.08000 * 119.44073 * 180.02562 * 11 10 9 31 31 H 0.97002 * 119.99671 * 185.65163 * 14 13 12 32 32 H 1.07997 * 125.80310 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.99573 * 179.97438 * 21 20 19 34 34 H 1.07999 * 120.00215 * 0.02562 * 22 21 20 35 35 H 0.96708 * 114.00358 * 179.97438 * 25 23 22 36 36 H 1.07996 * 126.70304 * 180.29094 * 26 20 19 37 37 H 1.07994 * 120.60080 * 179.68073 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3154 -2.4294 0.2107 10 6 1.8135 -3.6470 -0.3018 11 6 1.1074 -4.8057 -0.0738 12 7 -0.0213 -4.7933 0.6121 13 6 -0.5278 -3.6790 1.1192 14 7 -1.7195 -3.7307 1.8403 15 6 -2.2893 -4.9205 2.1159 16 8 -1.7185 -5.9517 1.8172 17 6 -3.6051 -4.9718 2.7798 18 6 -4.3713 -3.8964 3.1771 19 8 -5.4911 -4.3609 3.7387 20 6 -5.4868 -5.7098 3.7233 21 6 -6.5114 -6.5453 4.2325 22 6 -7.6165 -5.9966 4.7966 23 6 -8.6385 -6.8304 5.3051 24 8 -8.5273 -8.0403 5.2365 25 8 -9.7383 -6.2844 5.8660 26 6 -4.3338 -6.1354 3.1292 27 6 0.1093 -2.4615 0.9363 28 1 -0.4849 0.8401 0.0004 29 1 2.7353 -3.6687 -0.8641 30 1 1.4823 -5.7410 -0.4623 31 1 -2.1386 -2.9102 2.1439 32 1 -4.1103 -2.8555 3.0558 33 1 -6.4126 -7.6190 4.1716 34 1 -7.7154 -4.9229 4.8571 35 1 -10.3810 -6.9333 6.1841 36 1 -4.0342 -7.1593 2.9610 37 1 -0.3096 -1.5547 1.3470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:01 Heat of formation + Delta-G solvation = -54.479471 kcal Electronic energy + Delta-G solvation = -25270.384150 eV Core-core repulsion = 21173.095261 eV Total energy + Delta-G solvation = -4097.288889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02825 -40.57891 -39.56240 -37.78807 -36.57149 -34.77720 -34.42309 -33.87039 -33.29327 -30.62353 -29.98090 -28.51126 -26.07817 -25.38979 -24.14805 -22.05129 -21.72803 -21.46997 -20.50687 -19.15888 -18.72709 -17.91668 -17.51496 -17.09831 -16.60889 -16.32873 -15.91029 -15.73077 -15.30585 -14.94901 -14.50467 -14.27091 -14.24328 -13.98681 -13.69850 -13.18068 -12.90543 -12.78658 -12.66697 -12.48591 -12.42439 -11.99632 -11.51468 -11.23395 -11.19445 -11.04364 -10.97969 -10.38411 -10.23214 -10.08885 -9.83778 -9.65276 -9.46522 -8.47371 -8.06815 -7.83783 -7.13814 -6.82660 -4.70006 -0.11414 1.26702 1.96529 2.43965 2.63096 2.73561 2.82938 2.94109 2.97071 3.01471 3.17637 3.43823 3.72340 3.80190 4.32278 4.41474 4.61860 4.63401 4.71924 4.95408 5.17358 5.31529 5.46036 5.59651 5.64096 5.76541 5.92552 5.97585 6.04011 6.47831 6.52886 6.57832 6.72831 6.86989 7.05103 7.28889 7.37139 7.49565 7.67924 7.85087 8.10230 8.33703 8.61007 8.68062 8.74789 9.58578 10.02350 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.002129 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.937525 B =13151.013443 C =14350.907103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.141 3.859 10 C -0.280 4.280 11 C 0.118 3.882 12 N -0.554 5.554 13 C 0.334 3.666 14 N -0.652 5.652 15 C 0.568 3.432 16 O -0.473 6.473 17 C -0.224 4.224 18 C 0.042 3.958 19 O -0.154 6.154 20 C -0.038 4.038 21 C 0.051 3.949 22 C -0.219 4.219 23 C 0.517 3.483 24 O -0.525 6.525 25 O -0.507 6.507 26 C -0.085 4.085 27 C -0.237 4.237 28 H 0.281 0.719 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.406 0.594 32 H 0.222 0.778 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.409 0.591 36 H 0.170 0.830 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 -3.275 9.016 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.304 4.304 11 C -0.036 4.036 12 N -0.273 5.273 13 C 0.110 3.890 14 N -0.297 5.297 15 C 0.353 3.647 16 O -0.344 6.344 17 C -0.229 4.229 18 C -0.030 4.030 19 O -0.049 6.049 20 C -0.086 4.086 21 C 0.032 3.968 22 C -0.238 4.238 23 C 0.365 3.635 24 O -0.418 6.418 25 O -0.317 6.317 26 C -0.105 4.105 27 C -0.262 4.262 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.240 0.760 32 H 0.238 0.762 33 H 0.182 0.818 34 H 0.161 0.839 35 H 0.265 0.735 36 H 0.187 0.813 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.525 -4.561 8.913 17.642 hybrid contribution 0.258 1.760 0.025 1.779 sum -14.268 -2.800 8.938 17.067 Atomic orbital electron populations 1.69737 1.07583 1.29228 1.35658 1.25954 0.94904 1.01498 0.91942 0.86194 0.80455 0.80072 0.79353 1.19366 1.20036 1.18412 1.19588 0.95886 0.89971 1.42950 0.89995 1.17594 0.90339 0.92326 0.86469 1.21947 1.04129 0.94371 1.09904 1.21763 0.90481 0.96620 0.94741 1.67170 1.15062 1.28021 1.17024 1.18133 0.86376 0.91068 0.93446 1.43215 1.23659 1.08362 1.54507 1.17296 0.83480 0.84422 0.79479 1.90879 1.62043 1.32511 1.48938 1.20982 0.98832 0.93678 1.09397 1.25222 0.83518 0.99846 0.94406 1.83968 1.37879 1.21217 1.61803 1.19223 0.98842 0.80507 1.10007 1.20793 0.88499 0.99164 0.88323 1.21196 0.94479 1.01371 1.06749 1.19481 0.81902 0.86940 0.75168 1.90975 1.79386 1.16198 1.55233 1.85096 1.31109 1.43404 1.72096 1.22167 0.91732 1.00501 0.96069 1.21660 1.00943 0.95415 1.08186 0.90784 0.87846 0.85745 0.75957 0.76218 0.81828 0.83922 0.73450 0.81266 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.75 10.70 55.55 0.59 -18.16 16 2 C 0.08 1.74 5.31 -17.34 -0.09 1.65 16 3 Si 0.92 17.36 29.57 -169.99 -5.03 12.34 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.45 -11.26 9.14 -37.65 -0.34 -11.60 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 9 C 0.14 3.59 5.60 -106.55 -0.60 2.99 16 10 C -0.28 -6.67 9.90 -38.70 -0.38 -7.05 16 11 C 0.12 2.76 11.15 -17.68 -0.20 2.57 16 12 N -0.55 -13.76 7.89 -12.53 -0.10 -13.86 16 13 C 0.33 7.79 7.40 -154.75 -1.15 6.64 16 14 N -0.65 -12.00 5.37 -12.46 -0.07 -12.06 16 15 C 0.57 10.37 7.77 -12.50 -0.10 10.27 16 16 O -0.47 -10.65 15.22 5.28 0.08 -10.57 16 17 C -0.22 -3.00 6.16 -104.95 -0.65 -3.64 16 18 C 0.04 0.42 11.64 30.60 0.36 0.77 16 19 O -0.15 -1.54 10.10 5.89 0.06 -1.49 16 20 C -0.04 -0.39 6.77 -38.89 -0.26 -0.65 16 21 C 0.05 0.44 9.37 -39.19 -0.37 0.08 16 22 C -0.22 -1.88 9.54 -39.31 -0.38 -2.26 16 23 C 0.52 4.76 8.04 31.92 0.26 5.02 16 24 O -0.53 -6.23 16.84 -19.42 -0.33 -6.56 16 25 O -0.51 -3.53 13.54 -41.28 -0.56 -4.09 16 26 C -0.09 -1.01 10.64 -38.89 -0.41 -1.42 16 27 C -0.24 -5.75 8.61 -38.47 -0.33 -6.08 16 28 H 0.28 5.98 8.29 -40.82 -0.34 5.64 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 31 H 0.41 5.78 7.65 -40.82 -0.31 5.47 16 32 H 0.22 1.33 7.47 -52.49 -0.39 0.94 16 33 H 0.16 1.27 7.45 -52.49 -0.39 0.88 16 34 H 0.14 1.11 7.70 -52.49 -0.40 0.70 16 35 H 0.41 1.11 8.98 45.56 0.41 1.52 16 36 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.13 3.18 6.11 -52.49 -0.32 2.86 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -33.92 343.30 -7.04 -40.96 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -2.23 Total: 11.01 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -4.64 Total: -2.71 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.43 Total: -44.08 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.75 Total: -22.70 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.92 -7.04 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.520 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds