Wall clock time and date at job start Tue Mar 31 2020 15:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48505 * 109.47055 * 270.00013 * 3 2 1 5 5 H 1.48495 * 109.47164 * 29.99855 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99948 * 3 2 1 7 7 C 1.40026 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 170.15337 * 7 2 1 9 9 C 1.41551 * 120.00294 * 350.15625 * 7 2 1 10 10 C 1.41181 * 120.99279 * 153.72475 * 9 7 2 11 11 C 1.37587 * 119.01560 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11354 * 0.02920 * 11 10 9 13 13 C 1.32485 * 122.22732 * 359.65030 * 12 11 10 14 14 N 1.39394 * 119.58230 * 180.33956 * 13 12 11 15 15 C 1.34768 * 119.99970 * 5.66096 * 14 13 12 16 16 O 1.21596 * 120.00143 * 5.08742 * 15 14 13 17 17 C 1.47469 * 120.00215 * 185.08423 * 15 14 13 18 18 C 1.37889 * 126.75263 * 0.02562 * 17 15 14 19 19 O 1.33604 * 108.39894 * 180.02562 * 18 17 15 20 20 C 1.34895 * 109.89044 * 359.97438 * 19 18 17 21 21 C 1.41673 * 125.68348 * 180.02562 * 20 19 18 22 22 C 1.35662 * 120.00212 * 359.97374 * 21 20 19 23 23 C 1.41364 * 119.99898 * 180.02562 * 22 21 20 24 24 O 1.21700 * 120.00056 * 359.97438 * 23 22 21 25 25 O 1.34985 * 119.99973 * 180.02562 * 23 22 21 26 26 C 1.36514 * 108.62792 * 359.72759 * 20 19 18 27 27 C 1.38626 * 120.83556 * 0.64160 * 13 12 11 28 28 H 0.97002 * 119.99296 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.49512 * 0.04897 * 10 9 7 30 30 H 1.08000 * 119.44073 * 180.02562 * 11 10 9 31 31 H 0.97002 * 119.99671 * 185.65163 * 14 13 12 32 32 H 1.07997 * 125.80310 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.99573 * 179.97438 * 21 20 19 34 34 H 1.07999 * 120.00215 * 0.02562 * 22 21 20 35 35 H 0.96708 * 114.00358 * 179.97438 * 25 23 22 36 36 H 1.07996 * 126.70304 * 180.29094 * 26 20 19 37 37 H 1.07994 * 120.60080 * 179.68073 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3154 -2.4294 0.2107 10 6 1.8135 -3.6470 -0.3018 11 6 1.1074 -4.8057 -0.0738 12 7 -0.0213 -4.7933 0.6121 13 6 -0.5278 -3.6790 1.1192 14 7 -1.7195 -3.7307 1.8403 15 6 -2.2893 -4.9205 2.1159 16 8 -1.7185 -5.9517 1.8172 17 6 -3.6051 -4.9718 2.7798 18 6 -4.3713 -3.8964 3.1771 19 8 -5.4911 -4.3609 3.7387 20 6 -5.4868 -5.7098 3.7233 21 6 -6.5114 -6.5453 4.2325 22 6 -7.6165 -5.9966 4.7966 23 6 -8.6385 -6.8304 5.3051 24 8 -8.5273 -8.0403 5.2365 25 8 -9.7383 -6.2844 5.8660 26 6 -4.3338 -6.1354 3.1292 27 6 0.1093 -2.4615 0.9363 28 1 -0.4849 0.8401 0.0004 29 1 2.7353 -3.6687 -0.8641 30 1 1.4823 -5.7410 -0.4623 31 1 -2.1386 -2.9102 2.1439 32 1 -4.1103 -2.8555 3.0558 33 1 -6.4126 -7.6190 4.1716 34 1 -7.7154 -4.9229 4.8571 35 1 -10.3810 -6.9333 6.1841 36 1 -4.0342 -7.1593 2.9610 37 1 -0.3096 -1.5547 1.3470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:00 Heat of formation + Delta-G solvation = -76.812299 kcal Electronic energy + Delta-G solvation = -25271.352574 eV Core-core repulsion = 21173.095261 eV Total energy + Delta-G solvation = -4098.257313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.90112 -41.29408 -41.14559 -39.46493 -37.22259 -36.15501 -35.62468 -35.42940 -34.29079 -32.44264 -31.08696 -29.97478 -27.91497 -26.16526 -25.39256 -23.84431 -22.92352 -22.47259 -21.69254 -20.44032 -19.53113 -19.41344 -18.49208 -17.98721 -17.53136 -17.45906 -17.27366 -16.89447 -16.62133 -16.07577 -16.02921 -15.91200 -15.66609 -15.10224 -14.87038 -14.51363 -14.34931 -14.19796 -14.02133 -13.66870 -13.22289 -13.18057 -12.85269 -12.69129 -12.64605 -12.11327 -11.95475 -11.89856 -11.80683 -11.55267 -11.24052 -11.18006 -11.03847 -9.93392 -9.65067 -9.28236 -8.89027 -8.58190 -6.57126 -0.84727 0.22263 0.87231 1.00480 1.18612 1.43518 1.54736 1.59420 1.62758 2.01862 2.09048 2.21878 2.34971 2.36929 2.84735 3.34266 3.62791 3.74023 3.75314 4.01448 4.07606 4.24926 4.35685 4.51969 4.67153 4.76382 4.82887 4.89389 4.92822 5.03455 5.09451 5.14824 5.25404 5.47105 5.51673 5.60922 5.71402 5.93052 6.14268 6.46266 6.56265 6.79038 6.84645 6.90737 7.22526 7.80939 8.29787 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.002129 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.937525 B =13151.013443 C =14350.907103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.111 3.889 10 C -0.294 4.294 11 C 0.112 3.888 12 N -0.580 5.580 13 C 0.332 3.668 14 N -0.643 5.643 15 C 0.571 3.429 16 O -0.525 6.525 17 C -0.258 4.258 18 C 0.080 3.920 19 O -0.147 6.147 20 C -0.026 4.026 21 C 0.047 3.953 22 C -0.210 4.210 23 C 0.522 3.478 24 O -0.557 6.557 25 O -0.502 6.502 26 C -0.101 4.101 27 C -0.252 4.252 28 H 0.292 0.708 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.424 0.576 32 H 0.261 0.739 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.427 0.573 36 H 0.169 0.831 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 -1.352 9.949 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.513 4.513 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.318 4.318 11 C -0.042 4.042 12 N -0.300 5.300 13 C 0.106 3.894 14 N -0.290 5.290 15 C 0.359 3.641 16 O -0.399 6.399 17 C -0.263 4.263 18 C 0.007 3.993 19 O -0.041 6.041 20 C -0.073 4.073 21 C 0.029 3.971 22 C -0.229 4.229 23 C 0.371 3.629 24 O -0.451 6.451 25 O -0.314 6.314 26 C -0.120 4.120 27 C -0.277 4.277 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.167 0.833 31 H 0.262 0.738 32 H 0.277 0.723 33 H 0.188 0.812 34 H 0.173 0.827 35 H 0.287 0.713 36 H 0.186 0.814 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.144 -2.624 9.878 19.107 hybrid contribution 0.590 1.162 -0.215 1.321 sum -15.554 -1.462 9.663 18.369 Atomic orbital electron populations 1.69757 1.08741 1.30847 1.34731 1.26775 0.95755 1.04379 0.90945 0.85100 0.79003 0.75615 0.79396 1.19022 1.18648 1.18456 1.19859 0.96178 0.90916 1.44341 0.89976 1.18036 0.91292 0.93277 0.87132 1.22126 1.04877 0.94282 1.10529 1.22195 0.90191 0.97584 0.94238 1.67300 1.15848 1.28820 1.18015 1.18382 0.87502 0.90462 0.93059 1.43165 1.22346 1.09724 1.53800 1.17877 0.84533 0.83332 0.78376 1.90840 1.63810 1.34043 1.51247 1.20558 0.97557 0.95880 1.12294 1.25822 0.81951 1.00471 0.91022 1.84016 1.37619 1.21095 1.61340 1.19237 0.98358 0.80567 1.09170 1.20826 0.88338 0.99362 0.88606 1.21323 0.93974 1.01915 1.05709 1.19549 0.82323 0.86402 0.74673 1.90973 1.80098 1.17506 1.56562 1.85059 1.30910 1.43970 1.71490 1.22222 0.92408 1.00411 0.96988 1.21657 1.01281 0.95756 1.09007 0.89649 0.86594 0.83339 0.73771 0.72343 0.81215 0.82677 0.71279 0.81380 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.89 10.70 21.84 0.23 -37.66 16 2 C 0.04 1.74 5.31 85.29 0.45 2.19 16 3 Si 0.99 34.65 29.57 68.60 2.03 36.68 16 4 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 6 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.48 -24.26 9.14 23.52 0.21 -24.04 16 8 H 0.08 3.97 7.87 -2.91 -0.02 3.95 16 9 C 0.11 5.77 5.60 -21.11 -0.12 5.65 16 10 C -0.29 -14.36 9.90 22.84 0.23 -14.13 16 11 C 0.11 5.33 11.15 84.50 0.94 6.27 16 12 N -0.58 -29.51 7.89 -193.56 -1.53 -31.03 16 13 C 0.33 15.73 7.40 132.78 0.98 16.71 16 14 N -0.64 -23.64 5.37 -311.59 -1.67 -25.32 16 15 C 0.57 21.01 7.77 86.68 0.67 21.68 16 16 O -0.53 -24.44 15.22 -4.02 -0.06 -24.50 16 17 C -0.26 -6.67 6.16 -20.08 -0.12 -6.80 16 18 C 0.08 1.34 11.64 67.74 0.79 2.13 16 19 O -0.15 -2.50 10.10 -1.85 -0.02 -2.52 16 20 C -0.03 -0.47 6.77 22.72 0.15 -0.32 16 21 C 0.05 0.74 9.37 22.52 0.21 0.95 16 22 C -0.21 -3.13 9.54 22.44 0.21 -2.91 16 23 C 0.52 8.61 8.04 68.59 0.55 9.16 16 24 O -0.56 -12.54 16.84 19.18 0.32 -12.22 16 25 O -0.50 -5.79 13.54 -59.03 -0.80 -6.59 16 26 C -0.10 -2.33 10.64 22.71 0.24 -2.09 16 27 C -0.25 -12.44 8.61 22.99 0.20 -12.24 16 28 H 0.29 12.05 8.29 -92.71 -0.77 11.28 16 29 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.15 6.11 8.06 -2.91 -0.02 6.09 16 31 H 0.42 11.62 7.65 -92.71 -0.71 10.91 16 32 H 0.26 2.03 7.47 -2.91 -0.02 2.01 16 33 H 0.17 2.47 7.45 -2.91 -0.02 2.45 16 34 H 0.16 1.91 7.70 -2.91 -0.02 1.89 16 35 H 0.43 1.35 8.98 -74.05 -0.67 0.68 16 36 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.13 6.44 6.11 -2.91 -0.02 6.42 16 Total: -1.00 -74.94 343.30 3.91 -71.02 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.20 Total: 29.90 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.61 Total: 2.22 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -2.97 Total: -94.01 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.56 Total: -45.82 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.68 kcal Total: -74.94 3.91 -71.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.789 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds