Wall clock time and date at job start Tue Mar 31 2020 15:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47172 * 300.00243 * 3 2 1 6 6 H 1.48507 * 109.47092 * 59.99806 * 3 2 1 7 7 C 1.40034 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 182.12976 * 7 2 1 9 9 C 1.41545 * 119.99861 * 2.13275 * 7 2 1 10 10 C 1.41185 * 120.99369 * 147.41711 * 9 7 2 11 11 C 1.37578 * 119.01518 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11759 * 359.97438 * 11 10 9 13 13 C 1.32481 * 122.22750 * 359.73463 * 12 11 10 14 14 N 1.39395 * 119.58367 * 180.29288 * 13 12 11 15 15 C 1.34774 * 120.00011 * 5.84430 * 14 13 12 16 16 O 1.21599 * 120.00200 * 5.03143 * 15 14 13 17 17 C 1.47456 * 120.00033 * 185.03305 * 15 14 13 18 18 C 1.37886 * 126.75832 * 0.02562 * 17 15 14 19 19 O 1.33611 * 108.40424 * 179.97438 * 18 17 15 20 20 C 1.34896 * 109.88448 * 359.97438 * 19 18 17 21 21 C 1.41677 * 125.68096 * 180.02562 * 20 19 18 22 22 C 1.35664 * 119.99716 * 311.92917 * 21 20 19 23 23 C 1.41361 * 120.00402 * 349.97201 * 22 21 20 24 24 O 1.21697 * 120.00058 * 353.39029 * 23 22 21 25 25 O 1.34995 * 120.00157 * 173.39053 * 23 22 21 26 26 C 1.36510 * 108.63429 * 359.74761 * 20 19 18 27 27 C 1.38625 * 120.83556 * 0.53095 * 13 12 11 28 28 H 0.97003 * 119.99836 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.48628 * 0.03886 * 10 9 7 30 30 H 1.08004 * 119.43919 * 179.97438 * 11 10 9 31 31 H 0.96996 * 119.99292 * 185.84746 * 14 13 12 32 32 H 1.07997 * 125.80356 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.00034 * 131.93599 * 21 20 19 34 34 H 1.08005 * 119.99955 * 169.96440 * 22 21 20 35 35 H 0.96702 * 114.00007 * 180.02562 * 25 23 22 36 36 H 1.07995 * 126.70727 * 180.24954 * 26 20 19 37 37 H 1.08000 * 120.60531 * 179.75787 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0870 -1.2131 0.0353 9 6 1.3005 -2.4381 -0.0445 10 6 1.8411 -3.5658 -0.6998 11 6 1.1186 -4.7364 -0.7192 12 7 -0.0642 -4.8182 -0.1372 13 6 -0.6130 -3.7915 0.4952 14 7 -1.8621 -3.9409 1.0957 15 6 -2.4509 -5.1526 1.1336 16 8 -1.8548 -6.1313 0.7268 17 6 -3.8181 -5.2915 1.6682 18 6 -4.6174 -4.2825 2.1624 19 8 -5.7803 -4.8158 2.5474 20 6 -5.7723 -6.1457 2.3217 21 6 -6.8353 -7.0384 2.6052 22 6 -7.4470 -7.0020 3.8156 23 6 -6.8956 -6.2298 4.8634 24 8 -5.8118 -5.6952 4.7200 25 8 -7.5712 -6.0854 6.0232 26 6 -4.5718 -6.4870 1.7687 27 6 0.0371 -2.5690 0.5631 28 1 -0.4850 0.8401 -0.0004 29 1 2.8077 -3.5103 -1.1784 30 1 1.5255 -5.6031 -1.2189 31 1 -2.3073 -3.1728 1.4862 32 1 -4.3490 -3.2384 2.2272 33 1 -7.1585 -7.7480 1.8579 34 1 -8.3555 -7.5629 3.9786 35 1 -7.1150 -5.5403 6.6789 36 1 -4.2569 -7.4757 1.4692 37 1 -0.4154 -1.7334 1.0763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:05 Heat of formation + Delta-G solvation = -43.649073 kcal Electronic energy + Delta-G solvation = -26028.352649 eV Core-core repulsion = 21931.533401 eV Total energy + Delta-G solvation = -4096.819248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.72749 -40.46635 -39.43399 -37.69038 -36.52587 -34.62165 -34.30571 -33.74520 -32.94290 -30.54180 -29.70864 -28.37353 -25.99753 -25.29233 -23.89712 -21.96163 -21.85023 -21.18627 -20.42563 -19.13403 -18.66146 -17.97485 -17.62438 -16.51447 -16.23774 -16.09644 -15.75389 -15.53066 -15.20921 -14.55548 -14.44264 -14.28015 -14.19647 -13.88269 -13.59679 -13.19633 -12.85172 -12.66636 -12.61925 -12.51029 -12.37391 -11.82782 -11.44573 -11.19897 -10.93414 -10.92760 -10.46598 -10.33507 -10.12799 -9.85097 -9.68757 -9.51614 -9.42108 -8.32833 -7.94402 -7.77782 -7.05449 -6.70176 -4.65101 0.12529 1.47454 2.04209 2.63348 2.72307 2.79878 2.98302 3.02569 3.06005 3.07680 3.22550 3.59090 3.86476 3.89895 4.41826 4.64003 4.70992 4.83818 4.92048 4.94833 5.33371 5.49724 5.56242 5.62841 5.78859 5.87888 6.02401 6.13773 6.24032 6.55275 6.62246 6.77118 6.86091 6.95067 7.14361 7.34650 7.45819 7.58873 7.78239 7.95792 8.18365 8.41890 8.69215 8.76703 8.85988 9.63734 10.14020 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.002560 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.051014 B =10934.092341 C =12037.830714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.275 4.275 11 C 0.114 3.886 12 N -0.549 5.549 13 C 0.334 3.666 14 N -0.653 5.653 15 C 0.570 3.430 16 O -0.478 6.478 17 C -0.222 4.222 18 C 0.035 3.965 19 O -0.140 6.140 20 C -0.022 4.022 21 C 0.040 3.960 22 C -0.200 4.200 23 C 0.501 3.499 24 O -0.498 6.498 25 O -0.511 6.511 26 C -0.109 4.109 27 C -0.230 4.230 28 H 0.279 0.721 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.406 0.594 32 H 0.213 0.787 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.409 0.591 36 H 0.161 0.839 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 -6.827 7.610 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.299 4.299 11 C -0.040 4.040 12 N -0.268 5.268 13 C 0.109 3.891 14 N -0.299 5.299 15 C 0.356 3.644 16 O -0.349 6.349 17 C -0.227 4.227 18 C -0.038 4.038 19 O -0.034 6.034 20 C -0.070 4.070 21 C 0.022 3.978 22 C -0.219 4.219 23 C 0.347 3.653 24 O -0.388 6.388 25 O -0.322 6.322 26 C -0.129 4.129 27 C -0.255 4.255 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.241 0.759 32 H 0.230 0.770 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.265 0.735 36 H 0.179 0.821 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.881 -8.187 7.096 20.058 hybrid contribution 0.939 2.368 0.592 2.615 sum -15.942 -5.819 7.688 18.631 Atomic orbital electron populations 1.69713 1.07450 1.28854 1.37224 1.25920 0.94967 1.01363 0.92116 0.86100 0.80662 0.80482 0.78501 1.18450 1.19879 1.19852 1.19573 0.94709 0.89604 1.44999 0.90079 1.17634 0.90823 0.92039 0.86377 1.22019 1.02846 0.95965 1.09025 1.21776 0.90097 0.96044 0.96094 1.67179 1.13530 1.30340 1.15743 1.18200 0.85354 0.91282 0.94254 1.43248 1.18718 1.10319 1.57614 1.17365 0.84088 0.83691 0.79253 1.90852 1.63482 1.36760 1.43850 1.20784 0.97262 0.94255 1.10393 1.24947 0.82756 0.99138 0.96933 1.83992 1.35183 1.20715 1.63462 1.19088 0.98008 0.82692 1.07241 1.20848 0.88519 0.92662 0.95786 1.21508 1.03454 1.04658 0.92298 1.19696 0.83534 0.79168 0.82922 1.91036 1.21408 1.45061 1.81265 1.85069 1.51424 1.69136 1.26529 1.21849 0.92115 0.99452 0.99457 1.21813 0.99599 0.95531 1.08574 0.91018 0.87801 0.85741 0.75937 0.77012 0.81698 0.83143 0.73458 0.82108 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.73 10.62 55.55 0.59 -19.14 16 2 C 0.07 1.76 5.43 -17.34 -0.09 1.66 16 3 Si 0.92 18.11 29.56 -169.99 -5.02 13.09 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.73 9.12 -37.65 -0.34 -12.07 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.14 3.67 5.58 -106.55 -0.60 3.08 16 10 C -0.27 -6.74 9.90 -38.70 -0.38 -7.12 16 11 C 0.11 2.76 11.15 -17.68 -0.20 2.56 16 12 N -0.55 -14.19 7.89 -12.53 -0.10 -14.29 16 13 C 0.33 8.19 7.40 -154.76 -1.15 7.04 16 14 N -0.65 -13.16 5.37 -12.46 -0.07 -13.23 16 15 C 0.57 11.50 7.77 -12.51 -0.10 11.41 16 16 O -0.48 -11.52 15.23 5.28 0.08 -11.44 16 17 C -0.22 -3.52 6.16 -104.96 -0.65 -4.17 16 18 C 0.03 0.45 11.64 30.60 0.36 0.81 16 19 O -0.14 -1.82 8.53 -17.85 -0.15 -1.98 16 20 C -0.02 -0.26 4.86 -38.89 -0.19 -0.45 16 21 C 0.04 0.31 9.93 -39.19 -0.39 -0.07 16 22 C -0.20 -1.50 9.99 -39.32 -0.39 -1.90 16 23 C 0.50 5.02 7.86 31.92 0.25 5.27 16 24 O -0.50 -6.79 13.62 -27.33 -0.37 -7.16 16 25 O -0.51 -3.89 13.54 -41.30 -0.56 -4.45 16 26 C -0.11 -1.52 10.64 -38.89 -0.41 -1.93 16 27 C -0.23 -5.83 8.60 -38.47 -0.33 -6.16 16 28 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.13 2.61 8.06 -52.48 -0.42 2.19 16 31 H 0.41 6.61 7.65 -40.82 -0.31 6.30 16 32 H 0.21 1.99 7.47 -52.49 -0.39 1.59 16 33 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.41 1.67 8.98 45.56 0.41 2.08 16 36 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 37 H 0.14 3.44 6.16 -52.49 -0.32 3.12 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -35.99 338.40 -7.39 -43.38 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -2.28 Total: 12.16 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.61 Total: -2.05 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.42 Total: -46.66 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.00 Total: -25.03 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.99 -7.39 -43.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.270 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds