Wall clock time and date at job start Tue Mar 31 2020 15:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47172 * 300.00243 * 3 2 1 6 6 H 1.48507 * 109.47092 * 59.99806 * 3 2 1 7 7 C 1.40034 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 182.12976 * 7 2 1 9 9 C 1.41545 * 119.99861 * 2.13275 * 7 2 1 10 10 C 1.41185 * 120.99369 * 147.41711 * 9 7 2 11 11 C 1.37578 * 119.01518 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11759 * 359.97438 * 11 10 9 13 13 C 1.32481 * 122.22750 * 359.73463 * 12 11 10 14 14 N 1.39395 * 119.58367 * 180.29288 * 13 12 11 15 15 C 1.34774 * 120.00011 * 5.84430 * 14 13 12 16 16 O 1.21599 * 120.00200 * 5.03143 * 15 14 13 17 17 C 1.47456 * 120.00033 * 185.03305 * 15 14 13 18 18 C 1.37886 * 126.75832 * 0.02562 * 17 15 14 19 19 O 1.33611 * 108.40424 * 179.97438 * 18 17 15 20 20 C 1.34896 * 109.88448 * 359.97438 * 19 18 17 21 21 C 1.41677 * 125.68096 * 180.02562 * 20 19 18 22 22 C 1.35664 * 119.99716 * 311.92917 * 21 20 19 23 23 C 1.41361 * 120.00402 * 349.97201 * 22 21 20 24 24 O 1.21697 * 120.00058 * 353.39029 * 23 22 21 25 25 O 1.34995 * 120.00157 * 173.39053 * 23 22 21 26 26 C 1.36510 * 108.63429 * 359.74761 * 20 19 18 27 27 C 1.38625 * 120.83556 * 0.53095 * 13 12 11 28 28 H 0.97003 * 119.99836 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.48628 * 0.03886 * 10 9 7 30 30 H 1.08004 * 119.43919 * 179.97438 * 11 10 9 31 31 H 0.96996 * 119.99292 * 185.84746 * 14 13 12 32 32 H 1.07997 * 125.80356 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.00034 * 131.93599 * 21 20 19 34 34 H 1.08005 * 119.99955 * 169.96440 * 22 21 20 35 35 H 0.96702 * 114.00007 * 180.02562 * 25 23 22 36 36 H 1.07995 * 126.70727 * 180.24954 * 26 20 19 37 37 H 1.08000 * 120.60531 * 179.75787 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0870 -1.2131 0.0353 9 6 1.3005 -2.4381 -0.0445 10 6 1.8411 -3.5658 -0.6998 11 6 1.1186 -4.7364 -0.7192 12 7 -0.0642 -4.8182 -0.1372 13 6 -0.6130 -3.7915 0.4952 14 7 -1.8621 -3.9409 1.0957 15 6 -2.4509 -5.1526 1.1336 16 8 -1.8548 -6.1313 0.7268 17 6 -3.8181 -5.2915 1.6682 18 6 -4.6174 -4.2825 2.1624 19 8 -5.7803 -4.8158 2.5474 20 6 -5.7723 -6.1457 2.3217 21 6 -6.8353 -7.0384 2.6052 22 6 -7.4470 -7.0020 3.8156 23 6 -6.8956 -6.2298 4.8634 24 8 -5.8118 -5.6952 4.7200 25 8 -7.5712 -6.0854 6.0232 26 6 -4.5718 -6.4870 1.7687 27 6 0.0371 -2.5690 0.5631 28 1 -0.4850 0.8401 -0.0004 29 1 2.8077 -3.5103 -1.1784 30 1 1.5255 -5.6031 -1.2189 31 1 -2.3073 -3.1728 1.4862 32 1 -4.3490 -3.2384 2.2272 33 1 -7.1585 -7.7480 1.8579 34 1 -8.3555 -7.5629 3.9786 35 1 -7.1150 -5.5403 6.6789 36 1 -4.2569 -7.4757 1.4692 37 1 -0.4154 -1.7334 1.0763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:04 Heat of formation + Delta-G solvation = -67.716336 kcal Electronic energy + Delta-G solvation = -26029.396284 eV Core-core repulsion = 21931.533401 eV Total energy + Delta-G solvation = -4097.862883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.74434 -41.29021 -41.09413 -39.46862 -37.22552 -36.13649 -35.56774 -35.31864 -34.08064 -32.44765 -30.97117 -29.85665 -27.91523 -26.06746 -25.32662 -23.84481 -22.94097 -22.53712 -21.61877 -20.46926 -19.55566 -19.41361 -18.80036 -17.81309 -17.44689 -17.25238 -16.94309 -16.86684 -16.54804 -16.06004 -16.00411 -15.70226 -15.56946 -15.00111 -14.89999 -14.48337 -14.34747 -14.24597 -14.09041 -13.68981 -13.40408 -13.18843 -12.86798 -12.71262 -12.55946 -12.18425 -11.84607 -11.74563 -11.54092 -11.24638 -11.21989 -11.19592 -10.88340 -9.89059 -9.68050 -9.27002 -8.89954 -8.53651 -6.59956 -0.57336 0.26524 0.83113 0.98856 1.13959 1.42046 1.54450 1.57551 1.80649 2.05569 2.17803 2.21931 2.38033 2.47650 2.85063 3.43136 3.66414 3.69425 3.82990 4.07935 4.30958 4.39399 4.41443 4.60607 4.74885 4.77337 4.82011 4.89733 4.96185 5.06666 5.12022 5.26784 5.30965 5.44606 5.54842 5.60173 5.84297 5.94742 6.13109 6.44948 6.54082 6.78020 6.85299 6.93091 7.21119 7.77225 8.33460 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.002560 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.051014 B =10934.092341 C =12037.830714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.110 3.890 10 C -0.287 4.287 11 C 0.109 3.891 12 N -0.576 5.576 13 C 0.330 3.670 14 N -0.646 5.646 15 C 0.572 3.428 16 O -0.526 6.526 17 C -0.252 4.252 18 C 0.051 3.949 19 O -0.142 6.142 20 C -0.005 4.005 21 C 0.031 3.969 22 C -0.189 4.189 23 C 0.496 3.504 24 O -0.543 6.543 25 O -0.504 6.504 26 C -0.138 4.138 27 C -0.245 4.245 28 H 0.289 0.711 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.421 0.579 32 H 0.243 0.757 33 H 0.210 0.790 34 H 0.190 0.810 35 H 0.423 0.577 36 H 0.163 0.837 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 -6.244 8.313 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.310 4.310 11 C -0.045 4.045 12 N -0.295 5.295 13 C 0.104 3.896 14 N -0.293 5.293 15 C 0.360 3.640 16 O -0.401 6.401 17 C -0.257 4.257 18 C -0.022 4.022 19 O -0.035 6.035 20 C -0.054 4.054 21 C 0.014 3.986 22 C -0.207 4.207 23 C 0.344 3.656 24 O -0.436 6.436 25 O -0.316 6.316 26 C -0.157 4.157 27 C -0.271 4.271 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.170 0.830 31 H 0.259 0.741 32 H 0.259 0.741 33 H 0.226 0.774 34 H 0.207 0.793 35 H 0.282 0.718 36 H 0.181 0.819 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.932 -7.599 7.838 21.854 hybrid contribution 1.417 2.161 0.489 2.630 sum -17.515 -5.439 8.327 20.142 Atomic orbital electron populations 1.69752 1.08712 1.30456 1.36322 1.26806 0.95846 1.04426 0.91056 0.84986 0.79120 0.75684 0.78865 1.18283 1.19236 1.18776 1.19840 0.95013 0.90421 1.46354 0.89928 1.18077 0.91660 0.93075 0.87013 1.22208 1.03649 0.95803 1.09352 1.22249 0.89721 0.96929 0.95615 1.67301 1.14435 1.31018 1.16787 1.18437 0.86541 0.90834 0.93803 1.43228 1.17529 1.11380 1.57151 1.17930 0.85279 0.82722 0.78052 1.90807 1.65058 1.38071 1.46145 1.20478 0.95656 0.96453 1.13107 1.25390 0.82062 0.99800 0.94920 1.84028 1.34907 1.21492 1.63088 1.19697 0.98198 0.82583 1.04879 1.21386 0.87272 0.92609 0.97368 1.21896 1.03989 1.03660 0.91152 1.20260 0.82977 0.78554 0.83816 1.91029 1.23396 1.47137 1.82062 1.85046 1.51125 1.69132 1.26315 1.21945 0.92987 0.99202 1.01603 1.21789 0.99975 0.95804 1.09501 0.89963 0.86214 0.83035 0.74061 0.74083 0.77373 0.79257 0.71798 0.81944 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.42 10.62 21.84 0.23 -40.19 16 2 C 0.03 1.61 5.43 85.29 0.46 2.07 16 3 Si 0.99 36.42 29.56 68.60 2.03 38.45 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.48 -25.23 9.12 23.52 0.21 -25.02 16 8 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 9 C 0.11 5.94 5.58 -21.11 -0.12 5.82 16 10 C -0.29 -14.34 9.90 22.84 0.23 -14.12 16 11 C 0.11 5.35 11.15 84.50 0.94 6.29 16 12 N -0.58 -30.63 7.89 -193.57 -1.53 -32.16 16 13 C 0.33 16.68 7.40 132.78 0.98 17.66 16 14 N -0.65 -26.78 5.37 -311.59 -1.67 -28.46 16 15 C 0.57 23.86 7.77 86.67 0.67 24.53 16 16 O -0.53 -26.46 15.23 -4.03 -0.06 -26.52 16 17 C -0.25 -8.11 6.16 -20.08 -0.12 -8.24 16 18 C 0.05 1.28 11.64 67.74 0.79 2.07 16 19 O -0.14 -3.51 8.53 20.77 0.18 -3.33 16 20 C 0.00 -0.11 4.86 22.72 0.11 0.00 16 21 C 0.03 0.39 9.93 22.52 0.22 0.62 16 22 C -0.19 -2.17 9.99 22.44 0.22 -1.94 16 23 C 0.50 8.84 7.86 68.59 0.54 9.38 16 24 O -0.54 -14.23 13.62 26.75 0.36 -13.87 16 25 O -0.50 -6.44 13.54 -59.13 -0.80 -7.24 16 26 C -0.14 -3.85 10.64 22.72 0.24 -3.61 16 27 C -0.25 -12.82 8.60 22.99 0.20 -12.62 16 28 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 29 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 31 H 0.42 14.00 7.65 -92.71 -0.71 13.29 16 32 H 0.24 4.20 7.47 -2.91 -0.02 4.17 16 33 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.42 2.67 8.98 -74.06 -0.67 2.01 16 36 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.13 6.92 6.16 -2.91 -0.02 6.91 16 Total: -1.00 -80.73 338.40 4.12 -76.61 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.20 Total: 33.81 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.59 Total: 2.89 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -2.97 Total: -100.81 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.32 Total: -50.96 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -80.73 4.12 -76.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.894 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds