Wall clock time and date at job start Tue Mar 31 2020 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 120.00439 * 2 1 4 4 H 1.48495 * 109.47163 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.47005 * 29.99742 * 3 2 1 6 6 H 1.48495 * 109.47599 * 149.99345 * 3 2 1 7 7 C 1.40026 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00077 * 180.02562 * 7 2 1 9 9 C 1.41317 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.40586 * 119.78391 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.15140 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.67723 * 359.74605 * 11 10 9 13 13 C 1.39762 * 119.48858 * 0.47865 * 12 11 10 14 14 N 1.38826 * 119.58032 * 179.79375 * 13 12 11 15 15 C 1.46496 * 120.00332 * 359.72035 * 14 13 12 16 16 C 1.50698 * 109.47455 * 180.02562 * 15 14 13 17 17 C 1.33609 * 122.46590 * 90.02738 * 16 15 14 18 18 S 1.75864 * 109.75129 * 179.97438 * 17 16 15 19 19 C 1.75889 * 91.00878 * 359.97438 * 18 17 16 20 20 C 1.47918 * 125.26952 * 179.97438 * 19 18 17 21 21 N 1.34199 * 126.70168 * 180.02562 * 20 19 18 22 22 N 1.28987 * 107.25391 * 179.97438 * 21 20 19 23 23 N 1.28718 * 108.98895 * 0.02562 * 22 21 20 24 24 H 0.96997 * 125.31889 * 180.26512 * 23 22 21 25 25 N 1.28874 * 109.36422 * 359.97438 * 23 22 21 26 26 C 1.34746 * 109.46240 * 0.26341 * 19 18 17 27 27 N 1.31977 * 120.83273 * 359.51134 * 13 12 11 28 28 H 0.97004 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.42623 * 359.97438 * 10 9 7 30 30 H 1.07994 * 120.66234 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25739 * 180.27047 * 12 11 10 32 32 H 0.97002 * 119.99734 * 179.72583 * 14 13 12 33 33 H 1.09006 * 109.47005 * 60.00327 * 15 14 13 34 34 H 1.09004 * 109.47100 * 300.00341 * 15 14 13 35 35 H 1.07996 * 125.12648 * 359.95159 * 17 16 15 36 36 H 1.08000 * 122.63815 * 179.73097 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0005 10 6 2.0083 -3.6514 0.0016 11 6 1.3033 -4.8418 0.0011 12 6 -0.0823 -4.7944 0.0049 13 6 -0.7283 -3.5551 -0.0011 14 7 -2.1157 -3.5054 -0.0017 15 6 -2.8931 -4.7471 -0.0023 16 6 -4.3639 -4.4189 -0.0035 17 6 -5.0631 -4.2633 -1.1313 18 16 -6.7379 -3.8903 -0.7456 19 6 -6.3911 -3.9682 0.9770 20 6 -7.3770 -3.7484 2.0576 21 7 -7.1444 -3.8002 3.3782 22 7 -8.2611 -3.5506 3.9735 23 7 -9.1721 -3.3478 3.0870 24 1 -10.1000 -3.1368 3.2746 25 7 -8.6572 -3.4628 1.9112 26 6 -5.0868 -4.2529 1.1599 27 7 -0.0361 -2.4314 -0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 3.0883 -3.6554 0.0021 30 1 1.8220 -5.7890 0.0023 31 1 -0.6580 -5.7081 0.0089 32 1 -2.5703 -2.6486 -0.0017 33 1 -2.6508 -5.3279 0.8878 34 1 -2.6500 -5.3276 -0.8923 35 1 -4.6605 -4.3527 -2.1294 36 1 -4.6429 -4.3466 2.1400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592679713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:05 Heat of formation + Delta-G solvation = 202.650471 kcal Electronic energy + Delta-G solvation = -23238.149915 eV Core-core repulsion = 19659.349390 eV Total energy + Delta-G solvation = -3578.800525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.68866 -38.85997 -37.94051 -35.02394 -34.43179 -33.67630 -33.03524 -30.53242 -30.02093 -28.70456 -26.02931 -25.29355 -24.93389 -24.77591 -22.05791 -21.39188 -20.41347 -19.66214 -18.62449 -17.82378 -17.40481 -17.29972 -16.32781 -15.50187 -14.85094 -14.72207 -14.46046 -14.20822 -13.83779 -13.52613 -13.46689 -12.95562 -12.90056 -12.69656 -12.50220 -12.07114 -11.81590 -11.69025 -11.63285 -11.38497 -11.16369 -11.15462 -10.95113 -10.89467 -10.57571 -10.40674 -9.89460 -9.46254 -8.85862 -8.75492 -8.58555 -7.86964 -7.46585 -6.47990 -6.28593 -4.43361 0.28786 0.89382 1.24536 1.72147 1.89179 1.96039 2.67376 2.91188 3.13990 3.17227 3.27921 3.33631 3.43211 4.01735 4.10876 4.44495 4.86840 4.90092 4.94301 5.09103 5.29008 5.33366 5.67054 5.81864 5.89867 6.07436 6.10201 6.18299 6.22082 6.40646 6.61127 6.89602 6.93156 6.97738 7.29038 7.63326 7.84996 7.86984 7.95640 8.20845 8.39986 8.72256 8.84367 9.16055 10.28820 10.44567 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.002704 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.952506 B =10352.255763 C =11249.676849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.412 3.588 14 N -0.735 5.735 15 C 0.201 3.799 16 C -0.116 4.116 17 C -0.175 4.175 18 S 0.165 5.835 19 C -0.144 4.144 20 C 0.257 3.743 21 N -0.259 5.259 22 N -0.047 5.047 23 N -0.227 5.227 24 H 0.476 0.524 25 N -0.299 5.299 26 C -0.053 4.053 27 N -0.531 5.531 28 H 0.269 0.731 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.175 0.825 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.807 -6.166 0.771 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.373 5.373 15 C 0.073 3.927 16 C -0.128 4.128 17 C -0.313 4.313 18 S 0.431 5.569 19 C -0.264 4.264 20 C -0.024 4.024 21 N -0.133 5.133 22 N -0.042 5.042 23 N -0.073 5.073 24 H 0.330 0.670 25 N -0.151 5.151 26 C -0.088 4.088 27 N -0.253 5.253 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.193 0.807 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.978 -5.096 0.529 21.595 hybrid contribution 1.376 0.070 0.513 1.470 sum -19.602 -5.026 1.042 20.263 Atomic orbital electron populations 1.70150 1.07102 1.27277 1.29131 1.26040 0.94848 1.00859 0.93615 0.86394 0.80528 0.81155 0.79083 1.19551 1.20285 1.18618 1.19575 0.94128 0.89397 1.43557 0.89935 1.18195 0.86891 0.91837 0.86533 1.21535 0.98399 0.93497 1.20513 1.20594 0.93473 0.96345 0.95229 1.20602 0.94616 0.95449 1.28699 1.18486 0.84090 0.90283 0.89896 1.44127 1.02594 1.06451 1.84090 1.19654 0.83408 0.87960 1.01650 1.18906 0.97790 1.04669 0.91482 1.25964 0.96356 1.05838 1.03182 1.84229 1.08245 1.68234 0.96184 1.20994 0.94596 1.16645 0.94164 1.22441 0.88483 1.00500 0.90953 1.76229 1.15540 1.17530 1.03969 1.78934 0.92760 1.13499 1.19040 1.47660 1.14314 1.44569 1.00777 0.67010 1.75024 1.10331 1.22222 1.07497 1.20301 0.90951 0.96839 1.00719 1.68197 1.07651 1.24380 1.25033 0.91984 0.88764 0.88961 0.89131 0.76839 0.91765 0.91898 0.80722 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.16 11.46 55.55 0.64 -18.52 16 2 C 0.07 1.84 5.50 -17.35 -0.10 1.75 16 3 Si 0.90 18.91 29.56 -169.99 -5.02 13.89 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.43 -11.85 9.14 -37.74 -0.34 -12.20 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.29 8.19 6.55 -85.00 -0.56 7.63 16 10 C -0.32 -8.04 9.83 -38.65 -0.38 -8.42 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.37 -8.36 9.34 -38.86 -0.36 -8.73 16 13 C 0.41 9.96 7.65 -155.32 -1.19 8.77 16 14 N -0.74 -14.43 5.71 -61.58 -0.35 -14.78 16 15 C 0.20 3.00 5.13 -5.20 -0.03 2.97 16 16 C -0.12 -1.47 5.16 -106.34 -0.55 -2.02 16 17 C -0.18 -1.93 10.97 29.11 0.32 -1.61 16 18 S 0.17 1.72 23.32 -107.50 -2.51 -0.79 16 19 C -0.14 -1.78 6.44 -36.86 -0.24 -2.01 16 20 C 0.26 3.23 8.16 -156.26 -1.28 1.96 16 21 N -0.26 -3.45 12.51 32.08 0.40 -3.05 16 22 N -0.05 -0.51 13.46 60.35 0.81 0.30 16 23 N -0.23 -1.79 7.90 60.35 0.48 -1.31 16 24 H 0.48 1.26 8.96 -340.34 -3.05 -1.79 16 25 N -0.30 -3.16 12.41 32.10 0.40 -2.76 16 26 C -0.05 -0.67 9.86 -40.92 -0.40 -1.08 16 27 N -0.53 -14.69 7.89 -10.33 -0.08 -14.77 16 28 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 29 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 32 H 0.40 7.99 8.58 -40.82 -0.35 7.64 16 33 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 34 H 0.06 0.90 7.91 -51.93 -0.41 0.49 16 35 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -32.59 337.81 -11.46 -44.05 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.81 Total: 6.78 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -5.50 Total: -14.13 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 2.29 Total: -54.89 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.51 Total: -0.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.59 -11.46 -44.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592679713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.697 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds