Wall clock time and date at job start Tue Mar 31 2020 15:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 120.00439 * 2 1 4 4 H 1.48495 * 109.47163 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.47005 * 29.99742 * 3 2 1 6 6 H 1.48495 * 109.47599 * 149.99345 * 3 2 1 7 7 C 1.40026 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00077 * 180.02562 * 7 2 1 9 9 C 1.41317 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.40586 * 119.78391 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.15140 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.67723 * 359.74605 * 11 10 9 13 13 C 1.39762 * 119.48858 * 0.47865 * 12 11 10 14 14 N 1.38826 * 119.58032 * 179.79375 * 13 12 11 15 15 C 1.46496 * 120.00332 * 359.72035 * 14 13 12 16 16 C 1.50698 * 109.47455 * 180.02562 * 15 14 13 17 17 C 1.33609 * 122.46590 * 90.02738 * 16 15 14 18 18 S 1.75864 * 109.75129 * 179.97438 * 17 16 15 19 19 C 1.75889 * 91.00878 * 359.97438 * 18 17 16 20 20 C 1.47918 * 125.26952 * 179.97438 * 19 18 17 21 21 N 1.34199 * 126.70168 * 180.02562 * 20 19 18 22 22 N 1.28987 * 107.25391 * 179.97438 * 21 20 19 23 23 N 1.28718 * 108.98895 * 0.02562 * 22 21 20 24 24 H 0.96997 * 125.31889 * 180.26512 * 23 22 21 25 25 N 1.28874 * 109.36422 * 359.97438 * 23 22 21 26 26 C 1.34746 * 109.46240 * 0.26341 * 19 18 17 27 27 N 1.31977 * 120.83273 * 359.51134 * 13 12 11 28 28 H 0.97004 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.42623 * 359.97438 * 10 9 7 30 30 H 1.07994 * 120.66234 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25739 * 180.27047 * 12 11 10 32 32 H 0.97002 * 119.99734 * 179.72583 * 14 13 12 33 33 H 1.09006 * 109.47005 * 60.00327 * 15 14 13 34 34 H 1.09004 * 109.47100 * 300.00341 * 15 14 13 35 35 H 1.07996 * 125.12648 * 359.95159 * 17 16 15 36 36 H 1.08000 * 122.63815 * 179.73097 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0005 10 6 2.0083 -3.6514 0.0016 11 6 1.3033 -4.8418 0.0011 12 6 -0.0823 -4.7944 0.0049 13 6 -0.7283 -3.5551 -0.0011 14 7 -2.1157 -3.5054 -0.0017 15 6 -2.8931 -4.7471 -0.0023 16 6 -4.3639 -4.4189 -0.0035 17 6 -5.0631 -4.2633 -1.1313 18 16 -6.7379 -3.8903 -0.7456 19 6 -6.3911 -3.9682 0.9770 20 6 -7.3770 -3.7484 2.0576 21 7 -7.1444 -3.8002 3.3782 22 7 -8.2611 -3.5506 3.9735 23 7 -9.1721 -3.3478 3.0870 24 1 -10.1000 -3.1368 3.2746 25 7 -8.6572 -3.4628 1.9112 26 6 -5.0868 -4.2529 1.1599 27 7 -0.0361 -2.4314 -0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 3.0883 -3.6554 0.0021 30 1 1.8220 -5.7890 0.0023 31 1 -0.6580 -5.7081 0.0089 32 1 -2.5703 -2.6486 -0.0017 33 1 -2.6508 -5.3279 0.8878 34 1 -2.6500 -5.3276 -0.8923 35 1 -4.6605 -4.3527 -2.1294 36 1 -4.6429 -4.3466 2.1400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592679713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:04 Heat of formation + Delta-G solvation = 181.525933 kcal Electronic energy + Delta-G solvation = -23239.065944 eV Core-core repulsion = 19659.349390 eV Total energy + Delta-G solvation = -3579.716554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.52932 -40.24281 -39.40718 -36.43876 -35.46962 -35.01998 -34.41500 -32.28689 -31.42751 -30.18177 -27.41618 -27.05670 -25.90360 -25.63535 -23.43412 -22.90763 -22.11541 -20.59640 -19.53347 -19.22615 -18.73998 -18.23718 -17.90166 -16.78677 -16.44697 -16.29825 -15.91579 -15.38002 -15.09910 -15.02858 -14.72519 -14.40698 -14.10484 -13.97874 -13.72735 -13.42376 -13.24822 -12.90240 -12.79201 -12.69136 -12.53728 -12.49998 -12.28726 -12.21535 -11.99884 -11.81014 -11.70395 -11.25935 -10.61599 -9.78225 -9.66296 -9.47672 -9.38373 -8.23627 -8.18721 -6.43482 -0.60861 0.05271 0.36538 0.81462 0.93736 1.10706 1.34396 1.40379 1.42932 1.55936 1.61052 1.69053 2.27226 2.57154 2.94482 2.96823 3.23260 3.89555 3.98218 4.10356 4.20017 4.32799 4.40960 4.44368 4.65119 4.71525 4.85707 4.88249 5.05158 5.05747 5.16716 5.21848 5.39572 5.41409 5.54318 5.76856 6.02321 6.12179 6.27102 6.60586 6.88148 6.99066 7.01424 7.27154 8.39614 8.55410 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.002704 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.952506 B =10352.255763 C =11249.676849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.026 3.974 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.259 3.741 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.364 4.364 13 C 0.396 3.604 14 N -0.729 5.729 15 C 0.202 3.798 16 C -0.129 4.129 17 C -0.169 4.169 18 S 0.216 5.784 19 C -0.159 4.159 20 C 0.242 3.758 21 N -0.292 5.292 22 N -0.053 5.053 23 N -0.195 5.195 24 H 0.496 0.504 25 N -0.296 5.296 26 C -0.063 4.063 27 N -0.566 5.566 28 H 0.275 0.725 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.392 0.608 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.194 0.806 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.262 -6.486 0.110 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.505 4.505 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.368 4.368 11 C -0.054 4.054 12 C -0.390 4.390 13 C 0.155 3.845 14 N -0.365 5.365 15 C 0.076 3.924 16 C -0.141 4.141 17 C -0.307 4.307 18 S 0.482 5.518 19 C -0.279 4.279 20 C -0.039 4.039 21 N -0.165 5.165 22 N -0.048 5.048 23 N -0.047 5.047 24 H 0.356 0.644 25 N -0.149 5.149 26 C -0.098 4.098 27 N -0.289 5.289 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.225 0.775 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.211 0.789 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.488 -5.458 -0.116 23.141 hybrid contribution 1.593 0.043 0.714 1.747 sum -20.895 -5.414 0.598 21.593 Atomic orbital electron populations 1.70251 1.08687 1.28506 1.29897 1.26925 0.95726 1.04248 0.92613 0.85195 0.79005 0.76041 0.79323 1.18786 1.19467 1.18117 1.19916 0.94533 0.90544 1.45477 0.89699 1.18664 0.87704 0.93165 0.87289 1.21686 0.98932 0.93858 1.22333 1.21019 0.93849 0.97097 0.93483 1.20979 0.94912 0.96144 1.26953 1.18938 0.85790 0.90275 0.89451 1.44332 1.01258 1.07987 1.82898 1.19790 0.84302 0.86081 1.02236 1.18630 0.96579 1.06815 0.92089 1.26241 0.96970 1.03988 1.03528 1.84060 1.06890 1.66743 0.94117 1.21173 0.94556 1.16676 0.95529 1.22547 0.89136 1.01321 0.90887 1.76210 1.16746 1.18928 1.04619 1.78869 0.92810 1.13842 1.19240 1.47728 1.14983 1.42207 0.99740 0.64422 1.74977 1.09638 1.22018 1.08295 1.20234 0.91412 0.97709 1.00478 1.68165 1.07945 1.26329 1.26468 0.91497 0.88150 0.85284 0.85925 0.77452 0.91558 0.90596 0.78909 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.35 11.46 21.84 0.25 -41.10 16 2 C 0.03 1.39 5.50 85.29 0.47 1.86 16 3 Si 0.98 39.39 29.56 68.60 2.03 41.42 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.47 -26.66 9.14 23.46 0.21 -26.45 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.26 14.97 6.55 40.19 0.26 15.23 16 10 C -0.35 -17.80 9.83 22.87 0.22 -17.58 16 11 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 12 C -0.36 -16.12 9.34 22.73 0.21 -15.91 16 13 C 0.40 19.24 7.65 133.40 1.02 20.26 16 14 N -0.73 -28.58 5.71 -348.72 -1.99 -30.57 16 15 C 0.20 5.79 5.13 85.63 0.44 6.23 16 16 C -0.13 -3.13 5.16 -20.98 -0.11 -3.24 16 17 C -0.17 -3.39 10.97 66.77 0.73 -2.65 16 18 S 0.22 4.03 23.32 -56.49 -1.32 2.72 16 19 C -0.16 -3.79 6.44 24.03 0.15 -3.64 16 20 C 0.24 5.89 8.16 137.12 1.12 7.01 16 21 N -0.29 -7.71 12.51 -52.42 -0.66 -8.37 16 22 N -0.05 -1.09 13.46 37.02 0.50 -0.59 16 23 N -0.20 -2.73 7.90 37.02 0.29 -2.44 16 24 H 0.50 1.52 8.96 -347.52 -3.11 -1.59 16 25 N -0.30 -5.79 12.41 -52.37 -0.65 -6.44 16 26 C -0.06 -1.59 9.86 21.40 0.21 -1.38 16 27 N -0.57 -32.20 7.89 -186.59 -1.47 -33.67 16 28 H 0.27 13.71 8.29 -92.71 -0.77 12.94 16 29 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 30 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.12 4.55 6.68 -2.91 -0.02 4.53 16 32 H 0.39 16.02 8.58 -92.71 -0.80 15.22 16 33 H 0.07 1.88 7.90 -2.38 -0.02 1.86 16 34 H 0.08 2.00 7.91 -2.39 -0.02 1.98 16 35 H 0.19 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -72.31 337.81 -0.57 -72.88 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -2.73 Total: 27.55 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.18 Total: -21.39 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -3.73 Total: -123.18 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.32 Total: 2.72 kcal Total: -72.31 -0.57 -72.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592679713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.404 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds