Wall clock time and date at job start Tue Mar 31 2020 15:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86804 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47226 * 275.39846 * 3 2 1 5 5 H 1.48496 * 109.46645 * 35.39747 * 3 2 1 6 6 H 1.48501 * 109.46834 * 155.39483 * 3 2 1 7 7 C 1.40031 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99566 * 341.64289 * 7 2 1 9 9 C 1.41553 * 120.00053 * 161.63847 * 7 2 1 10 10 C 1.41181 * 120.99577 * 330.81069 * 9 7 2 11 11 C 1.36556 * 119.14945 * 180.02562 * 10 9 7 12 12 N 1.32098 * 121.26696 * 0.02562 * 11 10 9 13 13 C 1.32534 * 122.21329 * 359.70146 * 12 11 10 14 14 N 1.39081 * 119.65644 * 180.32381 * 13 12 11 15 15 C 1.46503 * 120.00068 * 180.26962 * 14 13 12 16 16 C 1.50693 * 109.47010 * 179.97438 * 15 14 13 17 17 C 1.33064 * 125.03922 * 89.72505 * 16 15 14 18 18 C 1.39351 * 114.91506 * 179.79701 * 17 16 15 19 19 C 1.48431 * 122.76245 * 180.22833 * 18 17 16 20 20 N 1.33690 * 126.30883 * 359.97438 * 19 18 17 21 21 N 1.28572 * 109.84732 * 179.85240 * 20 19 18 22 22 N 1.28919 * 109.72539 * 0.41471 * 21 20 19 23 23 H 0.96996 * 126.43079 * 179.76813 * 22 21 20 24 24 N 1.31992 * 126.30971 * 180.29832 * 19 18 17 25 25 C 1.34531 * 114.47221 * 0.48277 * 18 17 16 26 26 S 1.75813 * 125.04127 * 270.01949 * 16 15 14 27 27 C 1.38745 * 120.68427 * 0.58669 * 13 12 11 28 28 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.42859 * 0.04221 * 10 9 7 30 30 H 1.08000 * 119.36870 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99778 * 0.25732 * 14 13 12 32 32 H 1.09005 * 109.46816 * 299.99350 * 15 14 13 33 33 H 1.09003 * 109.47180 * 59.99364 * 15 14 13 34 34 H 1.08001 * 122.54639 * 359.96754 * 17 16 15 35 35 H 1.07996 * 125.22713 * 179.72327 * 25 18 17 36 36 H 1.08001 * 120.66348 * 179.70288 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3749 2.1123 -1.3938 5 1 1.5006 2.6170 0.8110 6 1 3.5914 1.4098 0.5830 7 6 2.0076 -1.2127 -0.0005 8 1 1.5088 -2.1243 0.2936 9 6 3.3691 -1.2437 -0.3867 10 6 3.8840 -0.3091 -1.3112 11 6 5.2034 -0.3739 -1.6576 12 7 6.0025 -1.2924 -1.1450 13 6 5.5757 -2.1912 -0.2695 14 7 6.4651 -3.1304 0.2415 15 6 6.0001 -4.1311 1.2052 16 6 7.1500 -5.0222 1.5983 17 6 7.9797 -4.7956 2.6136 18 6 8.9683 -5.7616 2.7908 19 6 9.9820 -5.6847 3.8723 20 7 10.0875 -4.7194 4.7912 21 7 11.0748 -4.9696 5.5758 22 7 11.6488 -6.0667 5.2166 23 1 12.4192 -6.4784 5.6382 24 7 10.9489 -6.5536 4.1005 25 6 8.9316 -6.7669 1.8975 26 16 7.5987 -6.5117 0.7791 27 6 4.2497 -2.2082 0.1384 28 1 -0.4850 0.8400 -0.0004 29 1 3.2429 0.4475 -1.7389 30 1 5.6009 0.3390 -2.3648 31 1 7.3933 -3.1231 -0.0403 32 1 5.6099 -3.6291 2.0906 33 1 5.2125 -4.7333 0.7523 34 1 7.8919 -3.9301 3.2537 35 1 9.6157 -7.6021 1.8711 36 1 3.9012 -2.9438 0.8483 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592680891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:53 Heat of formation + Delta-G solvation = 192.411528 kcal Electronic energy + Delta-G solvation = -23028.286366 eV Core-core repulsion = 19449.041848 eV Total energy + Delta-G solvation = -3579.244519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53900 -38.91468 -38.37920 -35.52727 -33.94532 -33.62618 -33.17814 -31.33106 -30.60730 -28.18990 -26.25324 -25.91094 -25.13083 -24.17615 -21.98010 -21.10973 -21.03410 -19.80974 -19.01878 -17.78737 -17.24245 -16.87948 -16.22352 -15.88356 -15.44943 -14.98654 -14.45811 -14.36619 -14.22469 -13.75976 -13.49318 -13.17650 -13.07831 -13.02578 -12.82662 -12.49416 -12.14911 -12.02181 -11.46455 -11.33855 -11.27441 -11.17467 -11.06604 -10.99633 -10.76559 -10.58147 -9.77318 -9.39834 -9.14086 -9.01800 -8.67437 -8.19289 -8.05841 -7.00345 -6.74889 -4.65468 0.25006 0.71585 1.22340 1.57274 1.60555 1.78730 2.63038 2.74766 2.81921 3.13756 3.23445 3.35078 3.43362 3.92830 3.97966 4.02159 4.55265 4.62269 4.80482 4.96820 5.14108 5.22895 5.40842 5.54485 5.71601 5.85385 5.90413 5.96190 6.10950 6.12501 6.45148 6.51991 6.69986 6.71956 7.09994 7.27313 7.60082 7.76612 7.77170 7.96000 8.26610 8.48794 8.59197 8.76586 9.51134 10.01313 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.002407 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.212117 B =11628.894767 C =12090.956138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.088 3.912 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.441 4.441 8 H 0.092 0.908 9 C 0.138 3.862 10 C -0.316 4.316 11 C 0.150 3.850 12 N -0.621 5.621 13 C 0.406 3.594 14 N -0.739 5.739 15 C 0.210 3.790 16 C -0.189 4.189 17 C -0.089 4.089 18 C -0.038 4.038 19 C 0.273 3.727 20 N -0.290 5.290 21 N 0.012 4.988 22 N -0.299 5.299 23 H 0.470 0.530 24 N -0.294 5.294 25 C -0.174 4.174 26 S 0.170 5.830 27 C -0.325 4.325 28 H 0.287 0.713 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.394 0.606 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.980 -13.135 7.156 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.133 4.133 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.471 4.471 8 H 0.110 0.890 9 C 0.130 3.870 10 C -0.341 4.341 11 C -0.002 4.002 12 N -0.344 5.344 13 C 0.177 3.823 14 N -0.375 5.375 15 C 0.083 3.917 16 C -0.307 4.307 17 C -0.120 4.120 18 C -0.055 4.055 19 C -0.010 4.010 20 N -0.168 5.168 21 N 0.015 4.985 22 N -0.146 5.146 23 H 0.324 0.676 24 N -0.138 5.138 25 C -0.315 4.315 26 S 0.436 5.564 27 C -0.352 4.352 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.228 0.772 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.165 -13.768 6.244 23.633 hybrid contribution 0.606 0.970 1.313 1.741 sum 18.771 -12.798 7.557 23.942 Atomic orbital electron populations 1.69657 1.08223 1.30495 1.34164 1.26189 0.94680 1.01979 0.90440 0.86238 0.81210 0.79351 0.78899 1.19455 1.21912 1.16846 1.19472 0.92925 0.96151 1.38598 0.89023 1.17681 0.92662 0.89154 0.87503 1.21517 0.97226 1.07349 1.07977 1.21306 0.90102 0.93505 0.95333 1.66811 1.39405 1.09737 1.18421 1.17948 0.87232 0.87434 0.89647 1.44137 1.11165 1.33272 1.48973 1.19515 0.90903 0.87823 0.93457 1.24465 1.03955 1.00996 1.01236 1.19991 0.93309 1.00011 0.98717 1.16188 0.96331 0.97922 0.95060 1.23187 0.93870 0.88728 0.95229 1.75558 1.12740 1.24098 1.04378 1.78387 1.02014 1.00637 1.17434 1.51011 1.26369 1.16181 1.21079 0.67574 1.78849 1.09022 1.22324 1.03604 1.25961 1.03474 1.02937 0.99087 1.84522 1.22975 1.18937 1.29985 1.21116 0.92185 1.09762 1.12120 0.90287 0.87748 0.85825 0.77198 0.90084 0.91132 0.82614 0.80810 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 13.92 55.55 0.77 -20.19 16 2 C 0.09 2.27 5.42 -17.34 -0.09 2.18 16 3 Si 0.92 20.74 24.54 -169.99 -4.17 16.57 16 4 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.25 -5.78 6.85 56.52 0.39 -5.39 16 7 C -0.44 -11.80 9.63 -37.65 -0.36 -12.16 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.14 3.52 5.13 -106.56 -0.55 2.97 16 10 C -0.32 -7.66 7.24 -39.07 -0.28 -7.94 16 11 C 0.15 3.38 11.10 -18.04 -0.20 3.18 16 12 N -0.62 -14.14 10.37 -12.82 -0.13 -14.27 16 13 C 0.41 8.81 7.65 -154.97 -1.19 7.63 16 14 N -0.74 -12.61 5.72 -61.65 -0.35 -12.96 16 15 C 0.21 2.92 5.37 -5.20 -0.03 2.89 16 16 C -0.19 -2.18 5.85 -36.11 -0.21 -2.39 16 17 C -0.09 -1.02 9.80 -40.97 -0.40 -1.42 16 18 C -0.04 -0.41 5.79 -106.59 -0.62 -1.03 16 19 C 0.27 3.10 8.01 -156.45 -1.25 1.84 16 20 N -0.29 -3.55 12.24 32.12 0.39 -3.15 16 21 N 0.01 0.12 13.42 60.35 0.81 0.93 16 22 N -0.30 -2.18 8.44 60.35 0.51 -1.67 16 23 H 0.47 1.16 8.96 -331.93 -2.98 -1.82 16 24 N -0.29 -2.87 12.78 32.14 0.41 -2.46 16 25 C -0.17 -1.59 10.95 29.42 0.32 -1.26 16 26 S 0.17 1.63 23.31 -107.50 -2.51 -0.88 16 27 C -0.32 -7.56 9.12 -38.44 -0.35 -7.91 16 28 H 0.29 6.77 8.29 -40.82 -0.34 6.43 16 29 H 0.10 2.49 4.76 -52.48 -0.25 2.24 16 30 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 31 H 0.39 6.35 8.59 -40.82 -0.35 5.99 16 32 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 33 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 34 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.11 2.27 6.71 -52.49 -0.35 1.92 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -30.89 331.88 -10.09 -40.98 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.61 Total: 5.53 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -5.21 Total: -13.42 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 2.41 Total: -53.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.17 Total: 16.57 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.51 Total: -0.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.89 -10.09 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592680891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.387 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds