Wall clock time and date at job start Tue Mar 31 2020 15:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86804 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47226 * 275.39846 * 3 2 1 5 5 H 1.48496 * 109.46645 * 35.39747 * 3 2 1 6 6 H 1.48501 * 109.46834 * 155.39483 * 3 2 1 7 7 C 1.40031 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99566 * 341.64289 * 7 2 1 9 9 C 1.41553 * 120.00053 * 161.63847 * 7 2 1 10 10 C 1.41181 * 120.99577 * 330.81069 * 9 7 2 11 11 C 1.36556 * 119.14945 * 180.02562 * 10 9 7 12 12 N 1.32098 * 121.26696 * 0.02562 * 11 10 9 13 13 C 1.32534 * 122.21329 * 359.70146 * 12 11 10 14 14 N 1.39081 * 119.65644 * 180.32381 * 13 12 11 15 15 C 1.46503 * 120.00068 * 180.26962 * 14 13 12 16 16 C 1.50693 * 109.47010 * 179.97438 * 15 14 13 17 17 C 1.33064 * 125.03922 * 89.72505 * 16 15 14 18 18 C 1.39351 * 114.91506 * 179.79701 * 17 16 15 19 19 C 1.48431 * 122.76245 * 180.22833 * 18 17 16 20 20 N 1.33690 * 126.30883 * 359.97438 * 19 18 17 21 21 N 1.28572 * 109.84732 * 179.85240 * 20 19 18 22 22 N 1.28919 * 109.72539 * 0.41471 * 21 20 19 23 23 H 0.96996 * 126.43079 * 179.76813 * 22 21 20 24 24 N 1.31992 * 126.30971 * 180.29832 * 19 18 17 25 25 C 1.34531 * 114.47221 * 0.48277 * 18 17 16 26 26 S 1.75813 * 125.04127 * 270.01949 * 16 15 14 27 27 C 1.38745 * 120.68427 * 0.58669 * 13 12 11 28 28 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.42859 * 0.04221 * 10 9 7 30 30 H 1.08000 * 119.36870 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99778 * 0.25732 * 14 13 12 32 32 H 1.09005 * 109.46816 * 299.99350 * 15 14 13 33 33 H 1.09003 * 109.47180 * 59.99364 * 15 14 13 34 34 H 1.08001 * 122.54639 * 359.96754 * 17 16 15 35 35 H 1.07996 * 125.22713 * 179.72327 * 25 18 17 36 36 H 1.08001 * 120.66348 * 179.70288 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3749 2.1123 -1.3938 5 1 1.5006 2.6170 0.8110 6 1 3.5914 1.4098 0.5830 7 6 2.0076 -1.2127 -0.0005 8 1 1.5088 -2.1243 0.2936 9 6 3.3691 -1.2437 -0.3867 10 6 3.8840 -0.3091 -1.3112 11 6 5.2034 -0.3739 -1.6576 12 7 6.0025 -1.2924 -1.1450 13 6 5.5757 -2.1912 -0.2695 14 7 6.4651 -3.1304 0.2415 15 6 6.0001 -4.1311 1.2052 16 6 7.1500 -5.0222 1.5983 17 6 7.9797 -4.7956 2.6136 18 6 8.9683 -5.7616 2.7908 19 6 9.9820 -5.6847 3.8723 20 7 10.0875 -4.7194 4.7912 21 7 11.0748 -4.9696 5.5758 22 7 11.6488 -6.0667 5.2166 23 1 12.4192 -6.4784 5.6382 24 7 10.9489 -6.5536 4.1005 25 6 8.9316 -6.7669 1.8975 26 16 7.5987 -6.5117 0.7791 27 6 4.2497 -2.2082 0.1384 28 1 -0.4850 0.8400 -0.0004 29 1 3.2429 0.4475 -1.7389 30 1 5.6009 0.3390 -2.3648 31 1 7.3933 -3.1231 -0.0403 32 1 5.6099 -3.6291 2.0906 33 1 5.2125 -4.7333 0.7523 34 1 7.8919 -3.9301 3.2537 35 1 9.6157 -7.6021 1.8711 36 1 3.9012 -2.9438 0.8483 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592680891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:52 Heat of formation + Delta-G solvation = 171.384488 kcal Electronic energy + Delta-G solvation = -23029.198167 eV Core-core repulsion = 19449.041848 eV Total energy + Delta-G solvation = -3580.156320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.29761 -40.54715 -39.38405 -36.93556 -35.71037 -34.49542 -34.03159 -33.16188 -31.83955 -29.64347 -27.84621 -27.16131 -26.19297 -24.95507 -23.38999 -22.90550 -22.22422 -20.64228 -19.78810 -19.59869 -18.36698 -17.64851 -17.62568 -17.18045 -16.79929 -16.60556 -16.01648 -15.54580 -15.28522 -15.25480 -14.96373 -14.62008 -14.41880 -14.19577 -13.99141 -13.53356 -13.38624 -13.16929 -13.01577 -12.80210 -12.70186 -12.40753 -12.09230 -12.06774 -11.93712 -11.88801 -11.65074 -11.22657 -10.74705 -10.08102 -9.90102 -9.87058 -9.44894 -8.93762 -8.38722 -6.65897 -0.50955 -0.07804 0.43329 0.71753 0.78534 0.79985 0.98113 1.19201 1.31094 1.45353 1.53382 1.90369 2.15020 2.57702 2.70676 2.71303 3.17238 3.61109 3.63746 4.03962 4.09865 4.17756 4.28856 4.44169 4.46384 4.60914 4.65867 4.76278 4.88417 4.92574 4.99687 5.08036 5.23002 5.28726 5.44010 5.65011 5.78232 5.92665 6.26472 6.33317 6.66718 6.79122 6.92701 7.00016 7.73462 8.13492 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.002407 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.212117 B =11628.894767 C =12090.956138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.055 3.945 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.475 4.475 8 H 0.061 0.939 9 C 0.123 3.877 10 C -0.334 4.334 11 C 0.153 3.847 12 N -0.624 5.624 13 C 0.410 3.590 14 N -0.725 5.725 15 C 0.210 3.790 16 C -0.208 4.208 17 C -0.084 4.084 18 C -0.056 4.056 19 C 0.264 3.736 20 N -0.323 5.323 21 N 0.005 4.995 22 N -0.270 5.270 23 H 0.489 0.511 24 N -0.295 5.295 25 C -0.154 4.154 26 S 0.202 5.798 27 C -0.339 4.339 28 H 0.297 0.703 29 H 0.107 0.893 30 H 0.161 0.839 31 H 0.401 0.599 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.198 0.802 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.631 -13.755 6.870 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.163 4.163 3 Si 0.793 3.207 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.115 3.885 10 C -0.358 4.358 11 C 0.000 4.000 12 N -0.348 5.348 13 C 0.179 3.821 14 N -0.360 5.360 15 C 0.084 3.916 16 C -0.325 4.325 17 C -0.116 4.116 18 C -0.073 4.073 19 C -0.020 4.020 20 N -0.201 5.201 21 N 0.009 4.991 22 N -0.122 5.122 23 H 0.348 0.652 24 N -0.139 5.139 25 C -0.294 4.294 26 S 0.468 5.532 27 C -0.366 4.366 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.178 0.822 31 H 0.237 0.763 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.215 0.785 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.838 -14.426 5.984 26.041 hybrid contribution 0.005 0.943 1.447 1.727 sum 20.842 -13.484 7.431 25.912 Atomic orbital electron populations 1.69669 1.09175 1.31834 1.35464 1.26823 0.95287 1.04276 0.89865 0.85434 0.79207 0.76304 0.79756 1.17699 1.20379 1.18476 1.19458 0.94059 0.95835 1.41189 0.92037 1.17886 0.92434 0.90272 0.87892 1.21615 0.98219 1.07613 1.08394 1.21857 0.89475 0.93591 0.95092 1.66989 1.39395 1.09889 1.18478 1.18145 0.87415 0.87625 0.88942 1.44246 1.10866 1.32439 1.48483 1.19535 0.92069 0.87500 0.92495 1.24144 1.03830 1.02182 1.02385 1.19971 0.93376 0.99949 0.98299 1.16189 0.96656 0.98503 0.95932 1.23259 0.94395 0.88915 0.95419 1.75536 1.13902 1.25279 1.05336 1.78328 1.02023 1.01404 1.17369 1.51033 1.26062 1.15149 1.19949 0.65163 1.78793 1.08825 1.22116 1.04185 1.26249 1.02881 1.02607 0.97668 1.84442 1.22549 1.17031 1.29134 1.21262 0.92917 1.09799 1.12634 0.89238 0.87490 0.82213 0.76329 0.90530 0.91039 0.83504 0.78482 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.78 13.92 21.84 0.30 -44.47 16 2 C 0.05 2.89 5.42 85.29 0.46 3.35 16 3 Si 0.97 42.62 24.54 68.60 1.68 44.30 16 4 H -0.25 -10.32 6.70 99.48 0.67 -9.66 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -12.02 6.85 99.48 0.68 -11.34 16 7 C -0.47 -26.42 9.63 23.52 0.23 -26.20 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 C 0.12 6.38 5.13 -21.12 -0.11 6.27 16 10 C -0.33 -15.93 7.24 22.60 0.16 -15.77 16 11 C 0.15 6.58 11.10 84.26 0.94 7.51 16 12 N -0.62 -27.29 10.37 -194.47 -2.02 -29.31 16 13 C 0.41 17.40 7.65 132.90 1.02 18.42 16 14 N -0.72 -23.90 5.72 -348.96 -2.00 -25.90 16 15 C 0.21 5.72 5.37 85.63 0.46 6.18 16 16 C -0.21 -4.55 5.85 24.52 0.14 -4.41 16 17 C -0.08 -1.86 9.80 21.38 0.21 -1.65 16 18 C -0.06 -1.12 5.79 -21.14 -0.12 -1.25 16 19 C 0.26 5.60 8.01 137.42 1.10 6.70 16 20 N -0.32 -7.67 12.24 -52.28 -0.64 -8.31 16 21 N 0.00 0.09 13.42 37.02 0.50 0.59 16 22 N -0.27 -3.39 8.44 37.02 0.31 -3.08 16 23 H 0.49 1.22 8.96 -340.36 -3.05 -1.83 16 24 N -0.29 -5.12 12.78 -52.24 -0.67 -5.79 16 25 C -0.15 -2.39 10.95 66.97 0.73 -1.66 16 26 S 0.20 3.41 23.31 -56.49 -1.32 2.10 16 27 C -0.34 -15.92 9.12 23.01 0.21 -15.71 16 28 H 0.30 14.20 8.29 -92.71 -0.77 13.43 16 29 H 0.11 4.98 4.76 -2.91 -0.01 4.97 16 30 H 0.16 5.63 8.06 -2.91 -0.02 5.61 16 31 H 0.40 12.23 8.59 -92.71 -0.80 11.43 16 32 H 0.08 2.17 7.93 -2.38 -0.02 2.15 16 33 H 0.07 1.96 7.93 -2.39 -0.02 1.94 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.11 4.94 6.71 -2.91 -0.02 4.92 16 Total: -1.00 -66.89 331.88 -1.14 -68.03 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -2.73 Total: 20.05 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.43 Total: -18.21 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.21 Total: -116.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.68 Total: 44.30 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.32 Total: 2.10 kcal Total: -66.89 -1.14 -68.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592680891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.410 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds